EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000024933 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: -
Full Name: Xenopus tropicalis LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated (lsm4)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 14842 bases
Position: chrGL172963.1:998911-1013752
Accession: NM_204040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000064131	LSM	PF01423.22	6.4e-17	1	1
ENSXETP00000053581	LSM	PF01423.22	7.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000053581	-	467	-	ENSXETP00000053581	145 (aa)	-	F7AYB4
ENSXETT00000062780	-	1727	XM_012958531	ENSXETP00000064131	138 (aa)	XP_012813985	Q6P334

Gene Model

Click here to download ENSXETG00000024933's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000024933's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000024933	lsm4	52	34.722	ENSXETG00000024918	snrpd3	55	34.722
ENSXETG00000024933	lsm4	70	31.000	ENSXETG00000024077	lsm2	100	31.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000024933	lsm4	100	89.209	ENSG00000130520	LSM4	100	91.367	Homo_sapiens
ENSXETG00000024933	lsm4	71	96.939	ENSAPOG00000005643	lsm4	65	96.939	Acanthochromis_polyacanthus
ENSXETG00000024933	lsm4	99	89.130	ENSAMEG00000011162	LSM4	95	92.029	Ailuropoda_melanoleuca
ENSXETG00000024933	lsm4	71	96.939	ENSAOCG00000006414	lsm4	66	96.939	Amphiprion_ocellaris
ENSXETG00000024933	lsm4	99	74.306	ENSAPEG00000006238	lsm4	66	96.939	Amphiprion_percula
ENSXETG00000024933	lsm4	71	96.939	ENSATEG00000016559	lsm4	64	96.939	Anabas_testudineus
ENSXETG00000024933	lsm4	100	89.209	ENSANAG00000034659	LSM4	100	91.367	Aotus_nancymaae
ENSXETG00000024933	lsm4	99	82.517	ENSACLG00000022738	lsm4	67	96.939	Astatotilapia_calliptera
ENSXETG00000024933	lsm4	99	89.781	ENSAMXG00000016932	lsm4	96	81.022	Astyanax_mexicanus
ENSXETG00000024933	lsm4	100	89.209	ENSBTAG00000008578	LSM4	100	91.367	Bos_taurus
ENSXETG00000024933	lsm4	60	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSXETG00000024933	lsm4	100	89.209	ENSCJAG00000014171	LSM4	100	91.367	Callithrix_jacchus
ENSXETG00000024933	lsm4	99	89.130	ENSCAFG00000014900	LSM4	90	92.029	Canis_familiaris
ENSXETG00000024933	lsm4	100	89.209	ENSCAFG00020012137	LSM4	100	91.367	Canis_lupus_dingo
ENSXETG00000024933	lsm4	99	89.130	ENSCHIG00000010928	LSM4	91	91.304	Capra_hircus
ENSXETG00000024933	lsm4	100	88.489	ENSTSYG00000030906	LSM4	100	90.647	Carlito_syrichta
ENSXETG00000024933	lsm4	100	87.050	ENSCAPG00000014140	LSM4	100	89.209	Cavia_aperea
ENSXETG00000024933	lsm4	100	87.050	ENSCPOG00000024117	LSM4	100	89.209	Cavia_porcellus
ENSXETG00000024933	lsm4	100	89.209	ENSCCAG00000036308	LSM4	100	91.367	Cebus_capucinus
ENSXETG00000024933	lsm4	100	89.209	ENSCATG00000029311	LSM4	100	91.367	Cercocebus_atys
ENSXETG00000024933	lsm4	100	87.770	ENSCLAG00000010828	LSM4	100	82.014	Chinchilla_lanigera
ENSXETG00000024933	lsm4	100	89.209	ENSCSAG00000005370	LSM4	100	91.367	Chlorocebus_sabaeus
ENSXETG00000024933	lsm4	100	94.928	ENSCPBG00000012925	LSM4	100	94.928	Chrysemys_picta_bellii
ENSXETG00000024933	lsm4	62	94.186	ENSCING00000007519	-	72	93.478	Ciona_intestinalis
ENSXETG00000024933	lsm4	62	94.186	ENSCSAVG00000008596	-	74	93.478	Ciona_savignyi
ENSXETG00000024933	lsm4	100	89.209	ENSCANG00000043686	LSM4	100	91.367	Colobus_angolensis_palliatus
ENSXETG00000024933	lsm4	100	74.638	ENSCGRG00001014436	Lsm4	100	89.928	Cricetulus_griseus_chok1gshd
ENSXETG00000024933	lsm4	99	74.453	ENSCGRG00000009398	Lsm4	100	89.855	Cricetulus_griseus_crigri
ENSXETG00000024933	lsm4	70	96.907	ENSCSEG00000016127	lsm4	96	83.942	Cynoglossus_semilaevis
ENSXETG00000024933	lsm4	99	88.489	ENSCVAG00000010601	lsm4	69	97.959	Cyprinodon_variegatus
ENSXETG00000024933	lsm4	88	87.097	ENSCVAG00000021828	lsm4	63	97.590	Cyprinodon_variegatus
ENSXETG00000024933	lsm4	97	85.106	ENSDARG00000023852	lsm4	68	97.938	Danio_rerio
ENSXETG00000024933	lsm4	100	88.489	ENSDORG00000024225	Lsm4	100	90.647	Dipodomys_ordii
ENSXETG00000024933	lsm4	70	81.443	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSXETG00000024933	lsm4	89	75.000	ENSETEG00000007762	-	100	90.323	Echinops_telfairi
ENSXETG00000024933	lsm4	54	93.333	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSXETG00000024933	lsm4	100	77.698	ENSECAG00000010141	LSM4	57	92.086	Equus_caballus
ENSXETG00000024933	lsm4	95	88.722	ENSELUG00000012821	lsm4	73	97.938	Esox_lucius
ENSXETG00000024933	lsm4	100	89.209	ENSFCAG00000040580	LSM4	100	91.367	Felis_catus
ENSXETG00000024933	lsm4	99	94.891	ENSFALG00000009478	LSM4	99	94.891	Ficedula_albicollis
ENSXETG00000024933	lsm4	99	87.681	ENSFDAG00000010124	LSM4	100	89.855	Fukomys_damarensis
ENSXETG00000024933	lsm4	70	97.917	ENSGMOG00000007729	lsm4	65	97.917	Gadus_morhua
ENSXETG00000024933	lsm4	100	94.928	ENSGALG00000003385	LSM4	100	94.928	Gallus_gallus
ENSXETG00000024933	lsm4	99	86.331	ENSGAFG00000004903	lsm4	63	93.976	Gambusia_affinis
ENSXETG00000024933	lsm4	69	97.895	ENSGACG00000008140	lsm4	65	96.939	Gasterosteus_aculeatus
ENSXETG00000024933	lsm4	100	94.928	ENSGAGG00000017812	LSM4	100	94.928	Gopherus_agassizii
ENSXETG00000024933	lsm4	100	89.209	ENSGGOG00000012914	-	100	91.367	Gorilla_gorilla
ENSXETG00000024933	lsm4	99	83.099	ENSHBUG00000008858	lsm4	55	96.939	Haplochromis_burtoni
ENSXETG00000024933	lsm4	100	82.734	ENSHGLG00000006568	LSM4	100	89.928	Heterocephalus_glaber_female
ENSXETG00000024933	lsm4	67	96.774	ENSHGLG00100007894	LSM4	100	96.774	Heterocephalus_glaber_male
ENSXETG00000024933	lsm4	99	86.957	ENSHCOG00000008819	lsm4	69	96.939	Hippocampus_comes
ENSXETG00000024933	lsm4	99	89.051	ENSIPUG00000005368	Lsm4	96	89.051	Ictalurus_punctatus
ENSXETG00000024933	lsm4	100	89.209	ENSSTOG00000016494	LSM4	100	91.367	Ictidomys_tridecemlineatus
ENSXETG00000024933	lsm4	100	87.050	ENSJJAG00000017420	Lsm4	100	89.928	Jaculus_jaculus
ENSXETG00000024933	lsm4	62	97.674	ENSKMAG00000005073	lsm4	68	95.918	Kryptolebias_marmoratus
ENSXETG00000024933	lsm4	71	96.939	ENSLBEG00000027930	lsm4	66	96.939	Labrus_bergylta
ENSXETG00000024933	lsm4	99	89.051	ENSLACG00000015861	LSM4	98	93.431	Latimeria_chalumnae
ENSXETG00000024933	lsm4	93	92.188	ENSLOCG00000002025	lsm4	96	90.441	Lepisosteus_oculatus
ENSXETG00000024933	lsm4	99	77.536	ENSLAFG00000017459	LSM4	99	91.304	Loxodonta_africana
ENSXETG00000024933	lsm4	100	89.209	ENSMFAG00000031194	LSM4	100	91.367	Macaca_fascicularis
ENSXETG00000024933	lsm4	100	89.209	ENSMMUG00000004405	LSM4	100	91.367	Macaca_mulatta
ENSXETG00000024933	lsm4	100	89.209	ENSMNEG00000042899	LSM4	100	91.367	Macaca_nemestrina
ENSXETG00000024933	lsm4	100	89.209	ENSMLEG00000027948	LSM4	100	91.367	Mandrillus_leucophaeus
ENSXETG00000024933	lsm4	99	87.681	ENSMAMG00000006190	lsm4	96	83.942	Mastacembelus_armatus
ENSXETG00000024933	lsm4	99	83.099	ENSMZEG00005016420	lsm4	67	96.939	Maylandia_zebra
ENSXETG00000024933	lsm4	99	83.333	ENSMGAG00000004976	LSM4	99	88.406	Meleagris_gallopavo
ENSXETG00000024933	lsm4	100	88.489	ENSMICG00000000222	LSM4	100	90.647	Microcebus_murinus
ENSXETG00000024933	lsm4	100	87.770	ENSMOCG00000020861	Lsm4	100	90.647	Microtus_ochrogaster
ENSXETG00000024933	lsm4	89	76.613	ENSMODG00000015044	-	100	92.742	Monodelphis_domestica
ENSXETG00000024933	lsm4	99	86.331	ENSMALG00000018159	lsm4	97	76.812	Monopterus_albus
ENSXETG00000024933	lsm4	100	87.770	MGP_CAROLIEiJ_G0031158	Lsm4	100	90.647	Mus_caroli
ENSXETG00000024933	lsm4	100	87.770	ENSMUSG00000031848	Lsm4	100	90.647	Mus_musculus
ENSXETG00000024933	lsm4	100	87.770	MGP_PahariEiJ_G0021623	Lsm4	100	90.647	Mus_pahari
ENSXETG00000024933	lsm4	100	87.770	MGP_SPRETEiJ_G0032276	Lsm4	100	90.647	Mus_spretus
ENSXETG00000024933	lsm4	100	89.209	ENSMPUG00000015589	LSM4	100	91.367	Mustela_putorius_furo
ENSXETG00000024933	lsm4	99	89.130	ENSMLUG00000004010	LSM4	99	91.304	Myotis_lucifugus
ENSXETG00000024933	lsm4	100	87.770	ENSNGAG00000008644	Lsm4	100	90.647	Nannospalax_galili
ENSXETG00000024933	lsm4	70	96.907	ENSNBRG00000022150	lsm4	60	96.907	Neolamprologus_brichardi
ENSXETG00000024933	lsm4	89	87.903	ENSMEUG00000013229	LSM4	100	87.903	Notamacropus_eugenii
ENSXETG00000024933	lsm4	89	82.258	ENSOPRG00000005575	LSM4	100	79.675	Ochotona_princeps
ENSXETG00000024933	lsm4	100	80.435	ENSODEG00000004519	-	100	71.739	Octodon_degus
ENSXETG00000024933	lsm4	100	87.770	ENSODEG00000020549	-	100	89.928	Octodon_degus
ENSXETG00000024933	lsm4	100	66.906	ENSODEG00000011712	-	100	66.906	Octodon_degus
ENSXETG00000024933	lsm4	99	82.517	ENSONIG00000012724	lsm4	67	96.939	Oreochromis_niloticus
ENSXETG00000024933	lsm4	63	93.407	ENSOANG00000007434	LSM4	89	93.204	Ornithorhynchus_anatinus
ENSXETG00000024933	lsm4	99	86.429	ENSORLG00000008391	lsm4	68	95.918	Oryzias_latipes
ENSXETG00000024933	lsm4	99	86.429	ENSORLG00020014829	lsm4	68	95.918	Oryzias_latipes_hni
ENSXETG00000024933	lsm4	99	86.429	ENSORLG00015010205	lsm4	68	95.918	Oryzias_latipes_hsok
ENSXETG00000024933	lsm4	100	84.783	ENSOMEG00000003606	lsm4	68	95.918	Oryzias_melastigma
ENSXETG00000024933	lsm4	72	94.949	ENSOGAG00000027992	LSM4	68	94.949	Otolemur_garnettii
ENSXETG00000024933	lsm4	63	97.701	ENSOARG00000012553	LSM4	68	95.960	Ovis_aries
ENSXETG00000024933	lsm4	100	89.209	ENSPPAG00000044045	-	100	91.367	Pan_paniscus
ENSXETG00000024933	lsm4	100	89.209	ENSPPRG00000018264	LSM4	100	91.367	Panthera_pardus
ENSXETG00000024933	lsm4	99	89.130	ENSPTIG00000006306	LSM4	100	91.304	Panthera_tigris_altaica
ENSXETG00000024933	lsm4	100	89.209	ENSPTRG00000031470	LSM4	100	91.367	Pan_troglodytes
ENSXETG00000024933	lsm4	100	89.209	ENSPANG00000014399	LSM4	100	91.367	Papio_anubis
ENSXETG00000024933	lsm4	99	88.971	ENSPKIG00000006154	lsm4	96	88.971	Paramormyrops_kingsleyae
ENSXETG00000024933	lsm4	99	94.161	ENSPSIG00000012358	LSM4	100	94.161	Pelodiscus_sinensis
ENSXETG00000024933	lsm4	100	87.770	ENSPEMG00000001358	Lsm4	100	90.647	Peromyscus_maniculatus_bairdii
ENSXETG00000024933	lsm4	99	86.331	ENSPFOG00000000570	lsm4	52	96.939	Poecilia_formosa
ENSXETG00000024933	lsm4	99	86.331	ENSPLAG00000016267	lsm4	69	96.939	Poecilia_latipinna
ENSXETG00000024933	lsm4	99	86.331	ENSPMEG00000016378	lsm4	69	96.939	Poecilia_mexicana
ENSXETG00000024933	lsm4	99	87.050	ENSPREG00000011290	lsm4	52	96.939	Poecilia_reticulata
ENSXETG00000024933	lsm4	100	89.209	ENSPPYG00000009736	LSM4	100	91.367	Pongo_abelii
ENSXETG00000024933	lsm4	89	75.000	ENSPCAG00000008513	LSM4	100	90.323	Procavia_capensis
ENSXETG00000024933	lsm4	100	88.489	ENSPCOG00000019837	LSM4	100	90.647	Propithecus_coquereli
ENSXETG00000024933	lsm4	100	89.209	ENSPVAG00000015383	LSM4	100	91.367	Pteropus_vampyrus
ENSXETG00000024933	lsm4	99	83.099	ENSPNYG00000016794	lsm4	67	96.939	Pundamilia_nyererei
ENSXETG00000024933	lsm4	96	89.474	ENSPNAG00000016598	lsm4	99	81.818	Pygocentrus_nattereri
ENSXETG00000024933	lsm4	100	87.770	ENSRNOG00000019572	Lsm4	100	90.647	Rattus_norvegicus
ENSXETG00000024933	lsm4	100	89.209	ENSRBIG00000024717	LSM4	100	91.367	Rhinopithecus_bieti
ENSXETG00000024933	lsm4	100	89.209	ENSRROG00000045706	LSM4	100	91.367	Rhinopithecus_roxellana
ENSXETG00000024933	lsm4	60	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSXETG00000024933	lsm4	90	88.000	ENSSBOG00000022455	LSM4	100	90.400	Saimiri_boliviensis_boliviensis
ENSXETG00000024933	lsm4	100	79.137	ENSSHAG00000011559	LSM4	100	93.525	Sarcophilus_harrisii
ENSXETG00000024933	lsm4	99	88.235	ENSSFOG00015021067	lsm4	96	88.235	Scleropages_formosus
ENSXETG00000024933	lsm4	71	95.918	ENSSMAG00000021020	lsm4	97	72.414	Scophthalmus_maximus
ENSXETG00000024933	lsm4	71	96.939	ENSSDUG00000009588	lsm4	59	96.939	Seriola_dumerili
ENSXETG00000024933	lsm4	71	96.939	ENSSLDG00000006827	lsm4	58	96.939	Seriola_lalandi_dorsalis
ENSXETG00000024933	lsm4	63	98.851	ENSSPUG00000010166	LSM4	64	97.980	Sphenodon_punctatus
ENSXETG00000024933	lsm4	71	96.939	ENSSPAG00000011615	lsm4	65	96.939	Stegastes_partitus
ENSXETG00000024933	lsm4	100	89.209	ENSSSCG00000034314	LSM4	100	91.367	Sus_scrofa
ENSXETG00000024933	lsm4	99	86.331	ENSTRUG00000021737	lsm4	69	95.918	Takifugu_rubripes
ENSXETG00000024933	lsm4	99	82.734	ENSTNIG00000010191	lsm4	68	96.939	Tetraodon_nigroviridis
ENSXETG00000024933	lsm4	99	89.130	ENSUAMG00000000665	LSM4	99	91.304	Ursus_americanus
ENSXETG00000024933	lsm4	100	89.209	ENSUMAG00000009013	LSM4	100	91.367	Ursus_maritimus
ENSXETG00000024933	lsm4	99	89.130	ENSVVUG00000008136	LSM4	71	91.304	Vulpes_vulpes
ENSXETG00000024933	lsm4	99	86.331	ENSXMAG00000026672	lsm4	52	96.939	Xiphophorus_maculatus