EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000025402 (Gene tree)
Gene ID: -
Gene Symbol: ssb
Alias: -
Full Name: Xenopus tropicalis Sjogren syndrome antigen B (ssb)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 6955 bases
Position: chrGL172741.1:2623331-2630285
Accession: NM_001001455
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000054190	RRM_1	PF00076.22	9e-15	1	1
ENSXETP00000054190	RRM_3	PF08777.11	6.9e-25	1	1
ENSXETP00000054190	La	PF05383.17	4.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000054190	-	1632	XM_012970270	ENSXETP00000054190	426 (aa)	XP_012825724	F6XTB6

Gene Model

Click here to download ENSXETG00000025402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000025402's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000025402	ssb	100	60.140	ENSG00000138385	SSB	98	71.186	Homo_sapiens
ENSXETG00000025402	ssb	91	55.128	ENSAPOG00000003448	ssb	100	55.216	Acanthochromis_polyacanthus
ENSXETG00000025402	ssb	100	58.597	ENSAMEG00000010507	SSB	100	57.014	Ailuropoda_melanoleuca
ENSXETG00000025402	ssb	87	57.951	ENSACIG00000001738	ssb	97	57.909	Amphilophus_citrinellus
ENSXETG00000025402	ssb	91	55.128	ENSAOCG00000020398	ssb	100	54.962	Amphiprion_ocellaris
ENSXETG00000025402	ssb	91	55.385	ENSAPEG00000020395	ssb	100	55.216	Amphiprion_percula
ENSXETG00000025402	ssb	99	53.037	ENSATEG00000016884	ssb	99	53.271	Anabas_testudineus
ENSXETG00000025402	ssb	100	56.054	ENSAPLG00000006109	SSB	100	58.652	Anas_platyrhynchos
ENSXETG00000025402	ssb	99	55.189	ENSACAG00000017008	SSB	99	55.425	Anolis_carolinensis
ENSXETG00000025402	ssb	100	52.570	ENSANAG00000027195	-	100	52.804	Aotus_nancymaae
ENSXETG00000025402	ssb	99	50.469	ENSACLG00000010798	ssb	99	50.469	Astatotilapia_calliptera
ENSXETG00000025402	ssb	97	49.881	ENSAMXG00000012606	ssb	98	51.551	Astyanax_mexicanus
ENSXETG00000025402	ssb	92	62.283	ENSBTAG00000008716	SSB	99	60.448	Bos_taurus
ENSXETG00000025402	ssb	66	36.014	WBGene00016653	C44E4.4	71	36.014	Caenorhabditis_elegans
ENSXETG00000025402	ssb	100	60.140	ENSCJAG00000045073	SSB	100	58.411	Callithrix_jacchus
ENSXETG00000025402	ssb	100	59.907	ENSCAFG00000012418	SSB	100	58.178	Canis_familiaris
ENSXETG00000025402	ssb	100	59.907	ENSCAFG00020002900	SSB	100	58.178	Canis_lupus_dingo
ENSXETG00000025402	ssb	92	57.935	ENSCHIG00000022196	-	99	56.313	Capra_hircus
ENSXETG00000025402	ssb	87	65.323	ENSCHIG00000022624	-	92	63.342	Capra_hircus
ENSXETG00000025402	ssb	100	60.422	ENSTSYG00000000097	SSB	99	58.685	Carlito_syrichta
ENSXETG00000025402	ssb	100	60.373	ENSCPOG00000003338	SSB	100	58.645	Cavia_porcellus
ENSXETG00000025402	ssb	100	60.140	ENSCCAG00000035147	SSB	100	57.944	Cebus_capucinus
ENSXETG00000025402	ssb	100	46.387	ENSCATG00000036701	SSB	100	44.626	Cercocebus_atys
ENSXETG00000025402	ssb	100	44.988	ENSCATG00000042909	-	100	43.458	Cercocebus_atys
ENSXETG00000025402	ssb	100	61.305	ENSCLAG00000015617	-	100	59.579	Chinchilla_lanigera
ENSXETG00000025402	ssb	100	59.674	ENSCSAG00000015200	SSB	89	57.944	Chlorocebus_sabaeus
ENSXETG00000025402	ssb	89	58.268	ENSCSAG00000018390	-	96	56.579	Chlorocebus_sabaeus
ENSXETG00000025402	ssb	100	60.373	ENSCHOG00000007763	SSB	100	58.645	Choloepus_hoffmanni
ENSXETG00000025402	ssb	100	60.514	ENSCPBG00000006519	SSB	100	60.748	Chrysemys_picta_bellii
ENSXETG00000025402	ssb	89	50.000	ENSCANG00000028838	-	91	48.556	Colobus_angolensis_palliatus
ENSXETG00000025402	ssb	97	52.785	ENSCANG00000033240	-	99	51.456	Colobus_angolensis_palliatus
ENSXETG00000025402	ssb	100	60.140	ENSCANG00000027695	SSB	100	58.411	Colobus_angolensis_palliatus
ENSXETG00000025402	ssb	77	62.997	ENSCGRG00001024831	Ssb	94	57.403	Cricetulus_griseus_chok1gshd
ENSXETG00000025402	ssb	77	62.997	ENSCGRG00000005387	Ssb	94	57.403	Cricetulus_griseus_crigri
ENSXETG00000025402	ssb	97	51.683	ENSCSEG00000011599	ssb	97	51.923	Cynoglossus_semilaevis
ENSXETG00000025402	ssb	99	53.147	ENSCVAG00000021558	ssb	99	52.914	Cyprinodon_variegatus
ENSXETG00000025402	ssb	99	52.123	ENSDARG00000029252	ssb	98	52.885	Danio_rerio
ENSXETG00000025402	ssb	100	60.839	ENSDNOG00000013450	SSB	100	59.112	Dasypus_novemcinctus
ENSXETG00000025402	ssb	100	53.226	ENSDORG00000005543	Ssb	100	53.687	Dipodomys_ordii
ENSXETG00000025402	ssb	77	32.647	FBgn0011638	La	65	36.029	Drosophila_melanogaster
ENSXETG00000025402	ssb	83	45.892	ENSEBUG00000001237	ssb	91	45.892	Eptatretus_burgeri
ENSXETG00000025402	ssb	99	60.941	ENSEASG00005022835	SSB	99	58.962	Equus_asinus_asinus
ENSXETG00000025402	ssb	100	61.072	ENSECAG00000018495	SSB	100	59.112	Equus_caballus
ENSXETG00000025402	ssb	72	53.268	ENSEEUG00000008077	SSB	78	53.268	Erinaceus_europaeus
ENSXETG00000025402	ssb	99	54.439	ENSELUG00000020929	ssb	99	54.439	Esox_lucius
ENSXETG00000025402	ssb	100	61.072	ENSFCAG00000011601	SSB	100	59.346	Felis_catus
ENSXETG00000025402	ssb	99	59.294	ENSFALG00000000930	SSB	99	61.033	Ficedula_albicollis
ENSXETG00000025402	ssb	100	60.606	ENSFDAG00000000598	SSB	100	58.879	Fukomys_damarensis
ENSXETG00000025402	ssb	69	51.667	ENSFHEG00000003268	ssb	94	52.459	Fundulus_heteroclitus
ENSXETG00000025402	ssb	96	51.551	ENSGMOG00000002664	ssb	98	51.313	Gadus_morhua
ENSXETG00000025402	ssb	99	60.471	ENSGALG00000009677	SSB	99	58.920	Gallus_gallus
ENSXETG00000025402	ssb	99	52.336	ENSGAFG00000002749	ssb	99	53.037	Gambusia_affinis
ENSXETG00000025402	ssb	99	50.000	ENSGACG00000005107	ssb	99	49.539	Gasterosteus_aculeatus
ENSXETG00000025402	ssb	100	60.280	ENSGAGG00000007807	SSB	100	60.514	Gopherus_agassizii
ENSXETG00000025402	ssb	56	54.545	ENSGGOG00000023471	-	90	51.452	Gorilla_gorilla
ENSXETG00000025402	ssb	95	51.232	ENSGGOG00000024891	-	98	49.630	Gorilla_gorilla
ENSXETG00000025402	ssb	99	50.469	ENSHBUG00000006584	ssb	99	50.469	Haplochromis_burtoni
ENSXETG00000025402	ssb	92	57.289	ENSHGLG00000005832	-	99	55.385	Heterocephalus_glaber_female
ENSXETG00000025402	ssb	100	59.770	ENSHGLG00000017580	-	100	57.931	Heterocephalus_glaber_female
ENSXETG00000025402	ssb	100	55.116	ENSHGLG00000004478	-	100	54.186	Heterocephalus_glaber_female
ENSXETG00000025402	ssb	100	59.770	ENSHGLG00100003084	-	100	57.931	Heterocephalus_glaber_male
ENSXETG00000025402	ssb	100	55.245	ENSHGLG00100008767	-	100	53.738	Heterocephalus_glaber_male
ENSXETG00000025402	ssb	97	49.034	ENSHCOG00000019011	ssb	98	50.483	Hippocampus_comes
ENSXETG00000025402	ssb	92	53.807	ENSIPUG00000003681	SSB	97	53.807	Ictalurus_punctatus
ENSXETG00000025402	ssb	100	60.748	ENSSTOG00000008416	SSB	100	59.346	Ictidomys_tridecemlineatus
ENSXETG00000025402	ssb	89	46.073	ENSJJAG00000016250	-	94	44.094	Jaculus_jaculus
ENSXETG00000025402	ssb	100	52.252	ENSJJAG00000023158	-	99	50.676	Jaculus_jaculus
ENSXETG00000025402	ssb	99	52.103	ENSKMAG00000017317	ssb	99	52.336	Kryptolebias_marmoratus
ENSXETG00000025402	ssb	99	50.935	ENSLBEG00000017345	ssb	99	51.168	Labrus_bergylta
ENSXETG00000025402	ssb	99	57.075	ENSLACG00000014056	SSB	99	57.075	Latimeria_chalumnae
ENSXETG00000025402	ssb	97	59.809	ENSLOCG00000007933	ssb	97	59.809	Lepisosteus_oculatus
ENSXETG00000025402	ssb	87	60.567	ENSLAFG00000000867	-	100	56.081	Loxodonta_africana
ENSXETG00000025402	ssb	96	52.068	ENSLAFG00000028909	-	99	50.852	Loxodonta_africana
ENSXETG00000025402	ssb	71	48.675	ENSLAFG00000026721	-	99	48.675	Loxodonta_africana
ENSXETG00000025402	ssb	100	60.140	ENSMFAG00000039066	SSB	100	62.590	Macaca_fascicularis
ENSXETG00000025402	ssb	84	55.587	ENSMFAG00000041478	-	100	53.782	Macaca_fascicularis
ENSXETG00000025402	ssb	89	54.474	ENSMMUG00000011724	-	91	52.632	Macaca_mulatta
ENSXETG00000025402	ssb	99	42.623	ENSMMUG00000039889	-	100	41.784	Macaca_mulatta
ENSXETG00000025402	ssb	100	60.140	ENSMMUG00000023051	SSB	100	62.590	Macaca_mulatta
ENSXETG00000025402	ssb	84	55.587	ENSMNEG00000034698	-	100	53.782	Macaca_nemestrina
ENSXETG00000025402	ssb	100	51.981	ENSMNEG00000028321	SSB	100	62.590	Macaca_nemestrina
ENSXETG00000025402	ssb	100	60.140	ENSMLEG00000035717	SSB	95	67.200	Mandrillus_leucophaeus
ENSXETG00000025402	ssb	84	47.619	ENSMLEG00000042644	-	79	48.624	Mandrillus_leucophaeus
ENSXETG00000025402	ssb	99	52.804	ENSMAMG00000004800	ssb	99	53.037	Mastacembelus_armatus
ENSXETG00000025402	ssb	99	50.469	ENSMZEG00005005749	ssb	99	50.469	Maylandia_zebra
ENSXETG00000025402	ssb	99	60.471	ENSMGAG00000010328	SSB	95	69.898	Meleagris_gallopavo
ENSXETG00000025402	ssb	87	61.622	ENSMICG00000033304	-	94	59.621	Microcebus_murinus
ENSXETG00000025402	ssb	99	60.706	ENSMICG00000028252	-	99	58.962	Microcebus_murinus
ENSXETG00000025402	ssb	100	55.708	ENSMODG00000008227	-	100	55.479	Monodelphis_domestica
ENSXETG00000025402	ssb	87	70.909	ENSMODG00000019271	-	100	70.909	Monodelphis_domestica
ENSXETG00000025402	ssb	81	65.269	ENSMODG00000007027	-	97	48.354	Monodelphis_domestica
ENSXETG00000025402	ssb	85	53.243	ENSMALG00000008045	ssb	90	55.882	Monopterus_albus
ENSXETG00000025402	ssb	84	60.000	MGP_CAROLIEiJ_G0023629	-	97	70.968	Mus_caroli
ENSXETG00000025402	ssb	84	59.467	ENSMUSG00000068882	Ssb	97	70.968	Mus_musculus
ENSXETG00000025402	ssb	84	59.358	MGP_PahariEiJ_G0025081	-	97	70.968	Mus_pahari
ENSXETG00000025402	ssb	84	59.467	MGP_SPRETEiJ_G0024551	Ssb	97	70.968	Mus_spretus
ENSXETG00000025402	ssb	100	60.606	ENSMPUG00000000785	SSB	100	58.879	Mustela_putorius_furo
ENSXETG00000025402	ssb	100	57.562	ENSMLUG00000016316	SSB	100	55.756	Myotis_lucifugus
ENSXETG00000025402	ssb	99	50.000	ENSNBRG00000012661	ssb	98	51.467	Neolamprologus_brichardi
ENSXETG00000025402	ssb	80	51.170	ENSNLEG00000028754	-	79	50.904	Nomascus_leucogenys
ENSXETG00000025402	ssb	100	60.140	ENSNLEG00000004958	SSB	100	61.871	Nomascus_leucogenys
ENSXETG00000025402	ssb	58	68.548	ENSMEUG00000001650	-	100	68.548	Notamacropus_eugenii
ENSXETG00000025402	ssb	93	58.500	ENSODEG00000004202	-	99	60.326	Octodon_degus
ENSXETG00000025402	ssb	99	50.704	ENSONIG00000008776	ssb	99	50.939	Oreochromis_niloticus
ENSXETG00000025402	ssb	99	58.019	ENSOANG00000008543	SSB	99	58.019	Ornithorhynchus_anatinus
ENSXETG00000025402	ssb	100	60.373	ENSOCUG00000010396	SSB	100	58.645	Oryctolagus_cuniculus
ENSXETG00000025402	ssb	99	52.103	ENSORLG00000017208	ssb	99	52.103	Oryzias_latipes
ENSXETG00000025402	ssb	99	51.636	ENSORLG00020022574	ssb	99	52.570	Oryzias_latipes_hni
ENSXETG00000025402	ssb	99	52.103	ENSORLG00015016592	ssb	99	52.336	Oryzias_latipes_hsok
ENSXETG00000025402	ssb	99	52.225	ENSOMEG00000003193	ssb	99	52.693	Oryzias_melastigma
ENSXETG00000025402	ssb	89	59.950	ENSOGAG00000029768	SSB	94	58.186	Otolemur_garnettii
ENSXETG00000025402	ssb	87	65.591	ENSOARG00000002906	SSB	92	63.612	Ovis_aries
ENSXETG00000025402	ssb	100	60.140	ENSPPAG00000042673	SSB	100	61.871	Pan_paniscus
ENSXETG00000025402	ssb	85	49.448	ENSPPAG00000006189	-	95	47.704	Pan_paniscus
ENSXETG00000025402	ssb	99	49.882	ENSPPAG00000032427	-	100	63.566	Pan_paniscus
ENSXETG00000025402	ssb	100	61.072	ENSPPRG00000006599	SSB	100	59.346	Panthera_pardus
ENSXETG00000025402	ssb	100	61.072	ENSPTIG00000011021	SSB	97	59.346	Panthera_tigris_altaica
ENSXETG00000025402	ssb	99	48.235	ENSPTRG00000042880	-	96	47.826	Pan_troglodytes
ENSXETG00000025402	ssb	100	60.140	ENSPTRG00000012620	SSB	100	61.871	Pan_troglodytes
ENSXETG00000025402	ssb	100	43.692	ENSPANG00000034126	-	80	49.096	Papio_anubis
ENSXETG00000025402	ssb	89	45.669	ENSPANG00000031877	-	90	44.474	Papio_anubis
ENSXETG00000025402	ssb	100	60.140	ENSPANG00000007440	SSB	100	62.590	Papio_anubis
ENSXETG00000025402	ssb	100	55.711	ENSPKIG00000019325	ssb	98	57.754	Paramormyrops_kingsleyae
ENSXETG00000025402	ssb	100	59.346	ENSPSIG00000002265	SSB	93	59.579	Pelodiscus_sinensis
ENSXETG00000025402	ssb	77	52.266	ENSPMGG00000020075	ssb	88	54.819	Periophthalmus_magnuspinnatus
ENSXETG00000025402	ssb	77	49.091	ENSPMAG00000002982	ssb	100	45.392	Petromyzon_marinus
ENSXETG00000025402	ssb	92	61.713	ENSPCIG00000028591	-	99	61.713	Phascolarctos_cinereus
ENSXETG00000025402	ssb	99	52.103	ENSPFOG00000009650	ssb	99	52.570	Poecilia_formosa
ENSXETG00000025402	ssb	99	51.402	ENSPLAG00000020498	ssb	99	52.570	Poecilia_latipinna
ENSXETG00000025402	ssb	99	52.336	ENSPMEG00000001051	ssb	99	52.570	Poecilia_mexicana
ENSXETG00000025402	ssb	88	54.907	ENSPREG00000003708	ssb	98	55.438	Poecilia_reticulata
ENSXETG00000025402	ssb	100	60.140	ENSPPYG00000012919	SSB	100	57.944	Pongo_abelii
ENSXETG00000025402	ssb	95	55.665	ENSPCAG00000010276	SSB	100	55.665	Procavia_capensis
ENSXETG00000025402	ssb	100	57.576	ENSPCOG00000015741	-	92	65.517	Propithecus_coquereli
ENSXETG00000025402	ssb	100	55.012	ENSPCOG00000023189	-	100	53.271	Propithecus_coquereli
ENSXETG00000025402	ssb	82	65.616	ENSPVAG00000006615	SSB	99	63.897	Pteropus_vampyrus
ENSXETG00000025402	ssb	99	50.469	ENSPNYG00000006444	ssb	99	50.469	Pundamilia_nyererei
ENSXETG00000025402	ssb	97	52.163	ENSPNAG00000011708	ssb	98	52.404	Pygocentrus_nattereri
ENSXETG00000025402	ssb	87	57.922	ENSRNOG00000007998	Ssb	93	56.623	Rattus_norvegicus
ENSXETG00000025402	ssb	87	58.602	ENSRNOG00000011606	AABR07061825.1	92	57.258	Rattus_norvegicus
ENSXETG00000025402	ssb	100	43.023	ENSRBIG00000029918	-	100	41.492	Rhinopithecus_bieti
ENSXETG00000025402	ssb	85	52.717	ENSRBIG00000041232	-	88	60.432	Rhinopithecus_bieti
ENSXETG00000025402	ssb	89	53.627	ENSRBIG00000041608	-	98	51.928	Rhinopithecus_bieti
ENSXETG00000025402	ssb	100	50.461	ENSRBIG00000041972	SSB	100	62.590	Rhinopithecus_bieti
ENSXETG00000025402	ssb	89	56.218	ENSRROG00000034102	-	97	51.313	Rhinopithecus_roxellana
ENSXETG00000025402	ssb	100	60.140	ENSRROG00000040346	SSB	100	62.590	Rhinopithecus_roxellana
ENSXETG00000025402	ssb	100	48.605	ENSRROG00000007149	-	100	47.086	Rhinopithecus_roxellana
ENSXETG00000025402	ssb	86	54.201	ENSRROG00000031684	-	86	64.138	Rhinopithecus_roxellana
ENSXETG00000025402	ssb	100	60.373	ENSSBOG00000027204	SSB	100	58.178	Saimiri_boliviensis_boliviensis
ENSXETG00000025402	ssb	87	64.595	ENSSHAG00000018062	SSB	100	59.302	Sarcophilus_harrisii
ENSXETG00000025402	ssb	99	56.876	ENSSFOG00015000550	ssb	99	56.876	Scleropages_formosus
ENSXETG00000025402	ssb	99	51.306	ENSSMAG00000013885	ssb	99	57.333	Scophthalmus_maximus
ENSXETG00000025402	ssb	99	52.336	ENSSDUG00000020117	ssb	99	52.804	Seriola_dumerili
ENSXETG00000025402	ssb	99	51.059	ENSSLDG00000002525	ssb	99	51.059	Seriola_lalandi_dorsalis
ENSXETG00000025402	ssb	95	55.419	ENSSARG00000007747	SSB	100	53.695	Sorex_araneus
ENSXETG00000025402	ssb	100	59.813	ENSSPUG00000012112	SSB	100	58.411	Sphenodon_punctatus
ENSXETG00000025402	ssb	90	54.404	ENSSPAG00000005696	ssb	100	54.453	Stegastes_partitus
ENSXETG00000025402	ssb	86	59.290	ENSSSCG00000015938	SSB	91	59.290	Sus_scrofa
ENSXETG00000025402	ssb	99	58.588	ENSTGUG00000007942	SSB	99	60.329	Taeniopygia_guttata
ENSXETG00000025402	ssb	99	52.582	ENSTRUG00000017839	ssb	99	52.927	Takifugu_rubripes
ENSXETG00000025402	ssb	86	55.707	ENSTNIG00000000915	ssb	100	55.707	Tetraodon_nigroviridis
ENSXETG00000025402	ssb	84	71.304	ENSTBEG00000009056	SSB	82	71.304	Tupaia_belangeri
ENSXETG00000025402	ssb	93	63.342	ENSTTRG00000002152	SSB	100	59.112	Tursiops_truncatus
ENSXETG00000025402	ssb	87	65.860	ENSUAMG00000027833	SSB	98	63.881	Ursus_americanus
ENSXETG00000025402	ssb	100	60.606	ENSUMAG00000013907	SSB	100	58.879	Ursus_maritimus
ENSXETG00000025402	ssb	93	64.232	ENSVPAG00000007183	SSB	99	62.374	Vicugna_pacos
ENSXETG00000025402	ssb	89	64.304	ENSVVUG00000016573	SSB	73	62.368	Vulpes_vulpes
ENSXETG00000025402	ssb	88	52.926	ENSXCOG00000019109	ssb	98	53.457	Xiphophorus_couchianus
ENSXETG00000025402	ssb	99	53.037	ENSXMAG00000004888	ssb	99	53.271	Xiphophorus_maculatus