EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000025920 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Xenopus tropicalis RNA binding motif protein 12 (LOC733876)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 5164 bases
Position: chrGL172732.1:1312011-1317174
Accession: NM_001045614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000032202	RRM_1	PF00076.22	5e-30	1	4
ENSXETP00000032202	RRM_1	PF00076.22	5e-30	2	4
ENSXETP00000032202	RRM_1	PF00076.22	5e-30	3	4
ENSXETP00000032202	RRM_1	PF00076.22	5e-30	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000032202	-	3097	-	ENSXETP00000032202	418 (aa)	XP_012820295	Q28D32

Gene Model

Click here to download ENSXETG00000025920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000025920's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000025920	-	99	33.185	ENSXETG00000014696	rbm12b	69	32.962
ENSXETG00000025920	-	96	34.169	ENSXETG00000014694	rbm12b	99	34.169

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000025920	-	97	30.453	ENSG00000183808	RBM12B	96	44.304	Homo_sapiens
ENSXETG00000025920	-	99	30.364	ENSAMEG00000007134	RBM12B	58	30.364	Ailuropoda_melanoleuca
ENSXETG00000025920	-	61	30.769	ENSACIG00000014943	rbm12b	98	30.769	Amphilophus_citrinellus
ENSXETG00000025920	-	96	43.820	ENSAPLG00000002020	RBM12B	66	39.806	Anas_platyrhynchos
ENSXETG00000025920	-	96	34.568	ENSACLG00000005578	rbm12b	95	34.568	Astatotilapia_calliptera
ENSXETG00000025920	-	92	34.831	ENSAMXG00000020853	zgc:153215	83	32.110	Astyanax_mexicanus
ENSXETG00000025920	-	97	30.067	ENSAMXG00000041973	rbm12b	74	30.290	Astyanax_mexicanus
ENSXETG00000025920	-	97	30.515	ENSCAFG00020012203	RBM12B	56	30.515	Canis_lupus_dingo
ENSXETG00000025920	-	97	30.103	ENSCAPG00000003543	RBM12B	52	30.103	Cavia_aperea
ENSXETG00000025920	-	97	30.103	ENSCPOG00000007815	RBM12B	52	30.103	Cavia_porcellus
ENSXETG00000025920	-	97	30.041	ENSCATG00000030769	RBM12B	57	30.041	Cercocebus_atys
ENSXETG00000025920	-	97	30.309	ENSCLAG00000017617	RBM12B	52	30.309	Chinchilla_lanigera
ENSXETG00000025920	-	97	40.777	ENSCPBG00000003061	RBM12B	65	40.777	Chrysemys_picta_bellii
ENSXETG00000025920	-	97	31.624	ENSDARG00000055889	zgc:153215	83	33.721	Danio_rerio
ENSXETG00000025920	-	97	30.470	ENSDORG00000024034	-	51	30.675	Dipodomys_ordii
ENSXETG00000025920	-	97	30.309	ENSEASG00005016297	RBM12B	56	30.309	Equus_asinus_asinus
ENSXETG00000025920	-	97	30.103	ENSECAG00000017870	RBM12B	50	30.103	Equus_caballus
ENSXETG00000025920	-	63	34.177	ENSELUG00000009039	zgc:153215	97	30.769	Esox_lucius
ENSXETG00000025920	-	97	30.309	ENSFCAG00000029274	RBM12B	57	30.309	Felis_catus
ENSXETG00000025920	-	97	30.309	ENSFDAG00000005576	RBM12B	51	30.309	Fukomys_damarensis
ENSXETG00000025920	-	97	41.748	ENSGALG00000035129	RBM12B	64	41.748	Gallus_gallus
ENSXETG00000025920	-	95	36.905	ENSGAFG00000007845	zgc:153215	82	36.905	Gambusia_affinis
ENSXETG00000025920	-	94	40.777	ENSGAGG00000009774	RBM12B	63	40.777	Gopherus_agassizii
ENSXETG00000025920	-	97	30.453	ENSGGOG00000011909	RBM12B	56	30.453	Gorilla_gorilla
ENSXETG00000025920	-	90	36.709	ENSHBUG00000016150	zgc:153215	78	36.709	Haplochromis_burtoni
ENSXETG00000025920	-	97	30.453	ENSHGLG00000009063	RBM12B	52	30.453	Heterocephalus_glaber_female
ENSXETG00000025920	-	97	30.453	ENSHGLG00100021324	RBM12B	52	30.453	Heterocephalus_glaber_male
ENSXETG00000025920	-	99	31.381	ENSIPUG00000001167	RBM12B	73	31.513	Ictalurus_punctatus
ENSXETG00000025920	-	88	34.211	ENSIPUG00000019731	zgc:153215	76	34.211	Ictalurus_punctatus
ENSXETG00000025920	-	97	30.579	ENSJJAG00000004165	-	57	30.579	Jaculus_jaculus
ENSXETG00000025920	-	91	42.697	ENSLACG00000007177	RBM12B	75	31.138	Latimeria_chalumnae
ENSXETG00000025920	-	97	30.041	ENSMFAG00000045430	RBM12B	57	30.041	Macaca_fascicularis
ENSXETG00000025920	-	97	30.041	ENSMMUG00000005558	RBM12B	56	30.041	Macaca_mulatta
ENSXETG00000025920	-	97	30.041	ENSMNEG00000041292	RBM12B	57	30.041	Macaca_nemestrina
ENSXETG00000025920	-	97	30.041	ENSMLEG00000037288	RBM12B	56	30.041	Mandrillus_leucophaeus
ENSXETG00000025920	-	97	31.193	ENSMAMG00000012038	zgc:153215	84	31.193	Mastacembelus_armatus
ENSXETG00000025920	-	95	36.709	ENSMZEG00005005435	zgc:153215	82	36.709	Maylandia_zebra
ENSXETG00000025920	-	97	30.515	ENSMICG00000036969	RBM12B	58	30.515	Microcebus_murinus
ENSXETG00000025920	-	97	31.158	ENSMOCG00000005603	-	59	30.947	Microtus_ochrogaster
ENSXETG00000025920	-	97	30.453	ENSMUSG00000046667	Rbm12b1	58	30.453	Mus_musculus
ENSXETG00000025920	-	97	30.453	ENSMUSG00000052137	Rbm12b2	58	30.453	Mus_musculus
ENSXETG00000025920	-	97	30.453	MGP_SPRETEiJ_G0026766	-	58	30.453	Mus_spretus
ENSXETG00000025920	-	97	30.453	MGP_SPRETEiJ_G0026765	-	53	30.453	Mus_spretus
ENSXETG00000025920	-	97	30.453	ENSNGAG00000002801	-	53	30.453	Nannospalax_galili
ENSXETG00000025920	-	96	36.709	ENSNBRG00000013644	zgc:153215	82	36.709	Neolamprologus_brichardi
ENSXETG00000025920	-	97	30.453	ENSODEG00000019204	RBM12B	52	30.453	Octodon_degus
ENSXETG00000025920	-	95	37.975	ENSONIG00000006054	zgc:153215	85	37.975	Oreochromis_niloticus
ENSXETG00000025920	-	97	30.181	ENSOANG00000015735	-	71	30.584	Ornithorhynchus_anatinus
ENSXETG00000025920	-	97	30.103	ENSPTIG00000020071	RBM12B	57	30.103	Panthera_tigris_altaica
ENSXETG00000025920	-	97	30.247	ENSPTRG00000020420	RBM12B	56	30.247	Pan_troglodytes
ENSXETG00000025920	-	97	30.041	ENSPANG00000035535	RBM12B	56	30.041	Papio_anubis
ENSXETG00000025920	-	97	31.791	ENSPSIG00000001348	RBM12B	73	31.791	Pelodiscus_sinensis
ENSXETG00000025920	-	97	31.481	ENSPFOG00000017451	zgc:153215	77	31.481	Poecilia_formosa
ENSXETG00000025920	-	97	33.945	ENSPNAG00000025628	zgc:153215	83	33.945	Pygocentrus_nattereri
ENSXETG00000025920	-	97	30.041	ENSRNOG00000016330	Rbm12b	58	30.041	Rattus_norvegicus
ENSXETG00000025920	-	97	30.041	ENSRNOG00000055292	LOC679087	66	30.041	Rattus_norvegicus
ENSXETG00000025920	-	97	30.041	ENSSBOG00000027592	RBM12B	56	30.041	Saimiri_boliviensis_boliviensis
ENSXETG00000025920	-	97	43.820	ENSSPUG00000016954	RBM12B	82	43.820	Sphenodon_punctatus
ENSXETG00000025920	-	98	30.000	ENSSSCG00000006110	RBM12B	57	30.000	Sus_scrofa
ENSXETG00000025920	-	97	30.328	ENSTGUG00000011860	RBM12B	99	30.328	Taeniopygia_guttata
ENSXETG00000025920	-	97	30.165	ENSTBEG00000000449	RBM12B	63	30.165	Tupaia_belangeri
ENSXETG00000025920	-	99	30.364	ENSUAMG00000023639	RBM12B	56	30.364	Ursus_americanus
ENSXETG00000025920	-	99	30.364	ENSUMAG00000016008	RBM12B	53	30.364	Ursus_maritimus
ENSXETG00000025920	-	97	30.309	ENSVVUG00000002694	RBM12B	56	30.309	Vulpes_vulpes