EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSXETG00000026465 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
-
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Xenopus_tropicalis
Status
putative
Strand
Plus strand
Length
4543 bases
Position
chrGL176249.1:5855-10397
Accession
XB-GENE-5941006
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXETP00000055806LSMPF01423.226.8e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXETT00000055806-246-ENSXETP0000005580682 (aa)-F6WIW7
Gene Model
Click here to download ENSXETG00000026465's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000026465's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSXETG00000026465lsm57234.426ENSXETG00000004471snrpe6434.426
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXETG00000026465lsm510095.122ENSG00000106355LSM59095.122Homo_sapiens
ENSXETG00000026465lsm510096.341ENSAPOG00000011743LSM59296.341Acanthochromis_polyacanthus
ENSXETG00000026465lsm510096.341ENSAPOG00000020779LSM59695.122Acanthochromis_polyacanthus
ENSXETG00000026465lsm510095.122ENSAMEG00000006700LSM59095.122Ailuropoda_melanoleuca
ENSXETG00000026465lsm510095.122ENSAOCG00000001636lsm59095.122Amphiprion_ocellaris
ENSXETG00000026465lsm56596.226ENSAPEG00000008201lsm58596.226Amphiprion_percula
ENSXETG00000026465lsm510095.122ENSAPEG00000008151lsm59095.122Amphiprion_percula
ENSXETG00000026465lsm510095.122ENSATEG00000020470lsm56195.122Anabas_testudineus
ENSXETG00000026465lsm58298.507ENSAPLG00000008171LSM59198.507Anas_platyrhynchos
ENSXETG00000026465lsm56894.643ENSACAG00000009530LSM59394.643Anolis_carolinensis
ENSXETG00000026465lsm59990.123ENSANAG00000024192-8490.123Aotus_nancymaae
ENSXETG00000026465lsm510073.171ENSANAG00000037758-8973.171Aotus_nancymaae
ENSXETG00000026465lsm510093.902ENSANAG00000034409-9093.902Aotus_nancymaae
ENSXETG00000026465lsm510092.683ENSACLG00000012891lsm59092.683Astatotilapia_calliptera
ENSXETG00000026465lsm510080.000ENSAMXG00000035543lsm59080.000Astyanax_mexicanus
ENSXETG00000026465lsm55977.083ENSBTAG00000052014-6377.083Bos_taurus
ENSXETG00000026465lsm510095.122ENSBTAG00000002332LSM59095.122Bos_taurus
ENSXETG00000026465lsm510069.512WBGene00003079lsm-59069.512Caenorhabditis_elegans
ENSXETG00000026465lsm59982.716ENSCJAG00000005678-9182.716Callithrix_jacchus
ENSXETG00000026465lsm510095.122ENSCJAG00000047379LSM58186.538Callithrix_jacchus
ENSXETG00000026465lsm56188.000ENSCAFG00000030781-5888.000Canis_familiaris
ENSXETG00000026465lsm59896.250ENSCAFG00000019261-8896.250Canis_familiaris
ENSXETG00000026465lsm510095.122ENSCAFG00020004946LSM59095.122Canis_lupus_dingo
ENSXETG00000026465lsm510095.122ENSCHIG00000024539LSM59095.122Capra_hircus
ENSXETG00000026465lsm510092.683ENSCHIG00000004079-9092.683Capra_hircus
ENSXETG00000026465lsm59075.676ENSCHIG00000021428-8976.923Capra_hircus
ENSXETG00000026465lsm510069.512ENSTSYG00000036637-8869.512Carlito_syrichta
ENSXETG00000026465lsm510074.390ENSTSYG00000026530-8274.390Carlito_syrichta
ENSXETG00000026465lsm510080.488ENSTSYG00000028728-8980.488Carlito_syrichta
ENSXETG00000026465lsm510095.122ENSTSYG00000006449-9095.122Carlito_syrichta
ENSXETG00000026465lsm579100.000ENSCAPG00000006980LSM587100.000Cavia_aperea
ENSXETG00000026465lsm510095.122ENSCPOG00000036386LSM59095.122Cavia_porcellus
ENSXETG00000026465lsm510062.195ENSCCAG00000037334-8862.195Cebus_capucinus
ENSXETG00000026465lsm510093.902ENSCCAG00000000821-9093.902Cebus_capucinus
ENSXETG00000026465lsm510074.390ENSCCAG00000032792-8974.390Cebus_capucinus
ENSXETG00000026465lsm510095.122ENSCCAG00000037808-9095.122Cebus_capucinus
ENSXETG00000026465lsm510092.683ENSCCAG00000032123-9092.683Cebus_capucinus
ENSXETG00000026465lsm510095.122ENSCATG00000040218LSM59095.122Cercocebus_atys
ENSXETG00000026465lsm59983.951ENSCATG00000014790-9592.727Cercocebus_atys
ENSXETG00000026465lsm510079.268ENSCLAG00000005062-8179.268Chinchilla_lanigera
ENSXETG00000026465lsm510095.122ENSCLAG00000000202LSM59095.122Chinchilla_lanigera
ENSXETG00000026465lsm59196.000ENSCHOG00000005335LSM59996.000Choloepus_hoffmanni
ENSXETG00000026465lsm510095.122ENSCPBG00000013685LSM59095.122Chrysemys_picta_bellii
ENSXETG00000026465lsm59189.333ENSCING00000020625-8489.333Ciona_intestinalis
ENSXETG00000026465lsm59585.897ENSCSAVG00000001439-8985.897Ciona_savignyi
ENSXETG00000026465lsm510095.122ENSCANG00000039909LSM59095.122Colobus_angolensis_palliatus
ENSXETG00000026465lsm510095.122ENSCGRG00001015461Lsm59095.122Cricetulus_griseus_chok1gshd
ENSXETG00000026465lsm58098.485ENSCGRG00000007677Lsm58898.485Cricetulus_griseus_crigri
ENSXETG00000026465lsm510054.878ENSCSEG00000015286lsm58554.878Cynoglossus_semilaevis
ENSXETG00000026465lsm510093.902ENSCVAG00000004262lsm59093.902Cyprinodon_variegatus
ENSXETG00000026465lsm510092.683ENSDARG00000071573lsm59092.683Danio_rerio
ENSXETG00000026465lsm510084.146ENSDNOG00000049495-9084.146Dasypus_novemcinctus
ENSXETG00000026465lsm510096.341ENSDNOG00000034958LSM59296.341Dasypus_novemcinctus
ENSXETG00000026465lsm510095.122ENSDORG00000009422Lsm59095.122Dipodomys_ordii
ENSXETG00000026465lsm59679.268FBgn0035675CG66109079.268Drosophila_melanogaster
ENSXETG00000026465lsm59664.557ENSETEG00000000777-9064.557Echinops_telfairi
ENSXETG00000026465lsm57779.365ENSETEG00000016074-8179.365Echinops_telfairi
ENSXETG00000026465lsm59873.750ENSETEG00000010651-8773.750Echinops_telfairi
ENSXETG00000026465lsm59971.605ENSETEG00000001469-8771.605Echinops_telfairi
ENSXETG00000026465lsm510095.122ENSETEG00000018068LSM59095.122Echinops_telfairi
ENSXETG00000026465lsm510091.463ENSEBUG00000008540lsm59091.463Eptatretus_burgeri
ENSXETG00000026465lsm510095.122ENSEASG00005003500LSM59095.122Equus_asinus_asinus
ENSXETG00000026465lsm510079.268ENSECAG00000018445LSM58979.268Equus_caballus
ENSXETG00000026465lsm56091.837ENSEEUG00000004102LSM58291.837Erinaceus_europaeus
ENSXETG00000026465lsm510093.902ENSELUG00000007792lsm59093.902Esox_lucius
ENSXETG00000026465lsm510095.122ENSFCAG00000000230LSM59095.122Felis_catus
ENSXETG00000026465lsm58298.507ENSFALG00000001892LSM58198.507Ficedula_albicollis
ENSXETG00000026465lsm58969.863ENSFDAG00000008685-8669.863Fukomys_damarensis
ENSXETG00000026465lsm510095.122ENSFDAG00000008767LSM59095.122Fukomys_damarensis
ENSXETG00000026465lsm59078.667ENSFHEG00000004011lsm58178.667Fundulus_heteroclitus
ENSXETG00000026465lsm510093.902ENSGMOG00000018235lsm59193.902Gadus_morhua
ENSXETG00000026465lsm510093.902ENSGALG00000041625LSM59093.902Gallus_gallus
ENSXETG00000026465lsm56596.226ENSGAFG00000016824lsm58596.226Gambusia_affinis
ENSXETG00000026465lsm510095.122ENSGACG00000005528lsm59095.122Gasterosteus_aculeatus
ENSXETG00000026465lsm510096.341ENSGAGG00000015593LSM59095.122Gopherus_agassizii
ENSXETG00000026465lsm510095.122ENSGGOG00000043469LSM59095.122Gorilla_gorilla
ENSXETG00000026465lsm510092.683ENSHBUG00000013773lsm59092.683Haplochromis_burtoni
ENSXETG00000026465lsm510095.122ENSHGLG00000011765LSM59095.122Heterocephalus_glaber_female
ENSXETG00000026465lsm510091.463ENSHGLG00100015610LSM59091.463Heterocephalus_glaber_male
ENSXETG00000026465lsm510052.439ENSHCOG00000008288lsm58552.439Hippocampus_comes
ENSXETG00000026465lsm510093.902ENSIPUG00000021095LSM59093.902Ictalurus_punctatus
ENSXETG00000026465lsm510095.122ENSSTOG00000012662LSM59095.122Ictidomys_tridecemlineatus
ENSXETG00000026465lsm59181.818ENSSTOG00000033886-8781.818Ictidomys_tridecemlineatus
ENSXETG00000026465lsm59687.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSXETG00000026465lsm510092.683ENSJJAG00000012145-9092.683Jaculus_jaculus
ENSXETG00000026465lsm510067.073ENSJJAG00000016144-8167.073Jaculus_jaculus
ENSXETG00000026465lsm510093.902ENSKMAG00000021861lsm59093.902Kryptolebias_marmoratus
ENSXETG00000026465lsm510095.122ENSLBEG00000009235LSM56595.122Labrus_bergylta
ENSXETG00000026465lsm56880.357ENSLBEG00000017379lsm59280.357Labrus_bergylta
ENSXETG00000026465lsm510092.683ENSLACG00000022448LSM59092.683Latimeria_chalumnae
ENSXETG00000026465lsm510092.683ENSLOCG00000012903lsm59092.683Lepisosteus_oculatus
ENSXETG00000026465lsm510095.122ENSLAFG00000029579LSM59095.122Loxodonta_africana
ENSXETG00000026465lsm510067.073ENSLAFG00000027938-8967.073Loxodonta_africana
ENSXETG00000026465lsm510092.683ENSMFAG00000030152-9092.683Macaca_fascicularis
ENSXETG00000026465lsm55991.667ENSMFAG00000031187-8191.667Macaca_fascicularis
ENSXETG00000026465lsm510095.122ENSMFAG00000038508LSM59095.122Macaca_fascicularis
ENSXETG00000026465lsm59983.951ENSMMUG00000039822-8983.951Macaca_mulatta
ENSXETG00000026465lsm56386.538ENSMMUG00000045129-8186.538Macaca_mulatta
ENSXETG00000026465lsm510092.683ENSMMUG00000030131-9092.683Macaca_mulatta
ENSXETG00000026465lsm510095.122ENSMNEG00000015331LSM59095.122Macaca_nemestrina
ENSXETG00000026465lsm510092.683ENSMNEG00000037935-9092.683Macaca_nemestrina
ENSXETG00000026465lsm510095.122ENSMLEG00000024945LSM59095.122Mandrillus_leucophaeus
ENSXETG00000026465lsm59882.500ENSMLEG00000034037-8982.500Mandrillus_leucophaeus
ENSXETG00000026465lsm510089.024ENSMAMG00000012869lsm59089.024Mastacembelus_armatus
ENSXETG00000026465lsm510092.683ENSMZEG00005019554lsm59092.683Maylandia_zebra
ENSXETG00000026465lsm510093.902ENSMGAG00000012117LSM59093.902Meleagris_gallopavo
ENSXETG00000026465lsm510095.122ENSMAUG00000012222Lsm59095.122Mesocricetus_auratus
ENSXETG00000026465lsm510093.902ENSMAUG00000008132-9093.902Mesocricetus_auratus
ENSXETG00000026465lsm59970.370ENSMICG00000033928-8470.370Microcebus_murinus
ENSXETG00000026465lsm510095.122ENSMICG00000005353LSM59095.122Microcebus_murinus
ENSXETG00000026465lsm510095.122ENSMOCG00000012018Lsm59095.122Microtus_ochrogaster
ENSXETG00000026465lsm58297.015ENSMMOG00000004026lsm57797.015Mola_mola
ENSXETG00000026465lsm56598.113ENSMODG00000013274-8598.113Monodelphis_domestica
ENSXETG00000026465lsm56592.453ENSMALG00000010343lsm58592.453Monopterus_albus
ENSXETG00000026465lsm510095.122MGP_CAROLIEiJ_G0028421Lsm510095.238Mus_caroli
ENSXETG00000026465lsm510095.122ENSMUSG00000091625Lsm510095.238Mus_musculus
ENSXETG00000026465lsm510095.122MGP_PahariEiJ_G0022171Lsm510095.238Mus_pahari
ENSXETG00000026465lsm510095.122MGP_SPRETEiJ_G0029423Lsm510095.238Mus_spretus
ENSXETG00000026465lsm510095.122ENSMLUG00000017028LSM59095.122Myotis_lucifugus
ENSXETG00000026465lsm510095.122ENSNGAG00000024142Lsm59095.122Nannospalax_galili
ENSXETG00000026465lsm510082.143ENSNGAG00000017707-9082.143Nannospalax_galili
ENSXETG00000026465lsm59873.750ENSNGAG00000022569-8473.750Nannospalax_galili
ENSXETG00000026465lsm55995.833ENSNBRG00000011386lsm56495.833Neolamprologus_brichardi
ENSXETG00000026465lsm56085.714ENSNBRG00000009964LSM59885.714Neolamprologus_brichardi
ENSXETG00000026465lsm510095.122ENSNLEG00000015268LSM59095.122Nomascus_leucogenys
ENSXETG00000026465lsm58098.485ENSOPRG00000002443LSM58898.485Ochotona_princeps
ENSXETG00000026465lsm510095.122ENSODEG00000008258-9095.122Octodon_degus
ENSXETG00000026465lsm510095.122ENSODEG00000019072-9095.122Octodon_degus
ENSXETG00000026465lsm58558.571ENSOANG00000014540-9358.571Ornithorhynchus_anatinus
ENSXETG00000026465lsm510095.122ENSOCUG00000029043LSM59095.122Oryctolagus_cuniculus
ENSXETG00000026465lsm510093.902ENSORLG00000027725lsm55393.902Oryzias_latipes
ENSXETG00000026465lsm510095.122ENSORLG00020003019lsm58195.122Oryzias_latipes_hni
ENSXETG00000026465lsm510093.902ENSORLG00015003338lsm59093.902Oryzias_latipes_hsok
ENSXETG00000026465lsm510093.902ENSOMEG00000001078lsm59093.902Oryzias_melastigma
ENSXETG00000026465lsm510095.122ENSOGAG00000013892LSM59095.122Otolemur_garnettii
ENSXETG00000026465lsm510095.122ENSOARG00000006944LSM59095.122Ovis_aries
ENSXETG00000026465lsm510095.122ENSPPAG00000003697-9095.122Pan_paniscus
ENSXETG00000026465lsm510095.122ENSPPRG00000002550LSM59095.122Panthera_pardus
ENSXETG00000026465lsm510095.122ENSPTIG00000015604LSM59095.122Panthera_tigris_altaica
ENSXETG00000026465lsm510095.122ENSPTRG00000019057LSM59095.122Pan_troglodytes
ENSXETG00000026465lsm510076.829ENSPTRG00000049488-9079.268Pan_troglodytes
ENSXETG00000026465lsm59983.951ENSPANG00000032538-8983.951Papio_anubis
ENSXETG00000026465lsm510095.122ENSPANG00000032179-9095.122Papio_anubis
ENSXETG00000026465lsm510091.463ENSPANG00000033477-9091.463Papio_anubis
ENSXETG00000026465lsm510093.902ENSPKIG00000011910lsm59093.902Paramormyrops_kingsleyae
ENSXETG00000026465lsm58298.507ENSPSIG00000014796LSM59198.507Pelodiscus_sinensis
ENSXETG00000026465lsm56596.226ENSPMGG00000011699lsm58596.226Periophthalmus_magnuspinnatus
ENSXETG00000026465lsm510068.293ENSPEMG00000022375-8968.293Peromyscus_maniculatus_bairdii
ENSXETG00000026465lsm55793.617ENSPEMG00000019994-8093.617Peromyscus_maniculatus_bairdii
ENSXETG00000026465lsm510093.902ENSPFOG00000001433lsm59093.902Poecilia_formosa
ENSXETG00000026465lsm510093.902ENSPLAG00000009665lsm59093.902Poecilia_latipinna
ENSXETG00000026465lsm510093.902ENSPMEG00000022265lsm59093.902Poecilia_mexicana
ENSXETG00000026465lsm56596.226ENSPREG00000022452lsm58596.226Poecilia_reticulata
ENSXETG00000026465lsm510091.463ENSPPYG00000017661LSM59091.463Pongo_abelii
ENSXETG00000026465lsm59996.296ENSPCAG00000013740LSM510096.296Procavia_capensis
ENSXETG00000026465lsm510095.122ENSPVAG00000009786LSM59095.122Pteropus_vampyrus
ENSXETG00000026465lsm510092.683ENSPNYG00000022236lsm59092.683Pundamilia_nyererei
ENSXETG00000026465lsm510093.902ENSPNAG00000001887lsm59093.902Pygocentrus_nattereri
ENSXETG00000026465lsm510091.566ENSRNOG00000027305AABR07065089.19091.566Rattus_norvegicus
ENSXETG00000026465lsm510095.122ENSRNOG00000042126Lsm59095.122Rattus_norvegicus
ENSXETG00000026465lsm510095.122ENSRBIG00000030340-9095.122Rhinopithecus_bieti
ENSXETG00000026465lsm510095.122ENSRBIG00000030714-9095.122Rhinopithecus_bieti
ENSXETG00000026465lsm510095.122ENSRBIG00000027803-9095.122Rhinopithecus_bieti
ENSXETG00000026465lsm510093.902ENSRBIG00000024431-9093.902Rhinopithecus_bieti
ENSXETG00000026465lsm510095.122ENSRROG00000023884-9095.122Rhinopithecus_roxellana
ENSXETG00000026465lsm510095.122ENSRROG00000004655-9095.122Rhinopithecus_roxellana
ENSXETG00000026465lsm510095.122ENSRROG00000042782-9095.122Rhinopithecus_roxellana
ENSXETG00000026465lsm58848.052YER146W-8348.052Saccharomyces_cerevisiae
ENSXETG00000026465lsm510070.732ENSSBOG00000034794-8870.732Saimiri_boliviensis_boliviensis
ENSXETG00000026465lsm510095.122ENSSBOG00000012312LSM59095.122Saimiri_boliviensis_boliviensis
ENSXETG00000026465lsm510093.902ENSSBOG00000019124-9093.902Saimiri_boliviensis_boliviensis
ENSXETG00000026465lsm510093.902ENSSFOG00015010099lsm59093.902Scleropages_formosus
ENSXETG00000026465lsm510056.098ENSSMAG00000007895lsm58556.098Scophthalmus_maximus
ENSXETG00000026465lsm56596.226ENSSDUG00000010762lsm58596.226Seriola_dumerili
ENSXETG00000026465lsm510093.902ENSSLDG00000025242lsm59093.902Seriola_lalandi_dorsalis
ENSXETG00000026465lsm58976.712ENSSLDG00000008014-8776.712Seriola_lalandi_dorsalis
ENSXETG00000026465lsm56892.857ENSSARG00000003330LSM56292.857Sorex_araneus
ENSXETG00000026465lsm510092.683ENSSPUG00000002690LSM59092.683Sphenodon_punctatus
ENSXETG00000026465lsm510056.098ENSSPAG00000005435lsm58556.098Stegastes_partitus
ENSXETG00000026465lsm510095.122ENSSSCG00000026064-9095.122Sus_scrofa
ENSXETG00000026465lsm58484.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSXETG00000026465lsm510093.902ENSTGUG00000017539LSM59093.902Taeniopygia_guttata
ENSXETG00000026465lsm510087.356ENSTRUG00000017749lsm56587.356Takifugu_rubripes
ENSXETG00000026465lsm510092.683ENSTNIG00000008695lsm59092.683Tetraodon_nigroviridis
ENSXETG00000026465lsm510095.122ENSTBEG00000004876LSM59095.122Tupaia_belangeri
ENSXETG00000026465lsm510095.122ENSTTRG00000004237LSM59095.122Tursiops_truncatus
ENSXETG00000026465lsm56386.538ENSUAMG00000009786LSM56886.538Ursus_americanus
ENSXETG00000026465lsm510095.122ENSUMAG00000002625LSM55995.122Ursus_maritimus
ENSXETG00000026465lsm510095.122ENSVPAG00000009985LSM59095.122Vicugna_pacos
ENSXETG00000026465lsm510095.122ENSVVUG00000021311LSM59095.122Vulpes_vulpes
ENSXETG00000026465lsm56596.226ENSXCOG00000015348lsm58596.226Xiphophorus_couchianus
ENSXETG00000026465lsm510093.902ENSXMAG00000029988lsm59093.902Xiphophorus_maculatus

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