EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000027221 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 6129 bases
Position: chrGL183168.1:780-6908
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000056914	RRM_1	PF00076.22	8.7e-46	1	2
ENSXETP00000056914	RRM_1	PF00076.22	8.7e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000056914	-	507	-	ENSXETP00000056914	168 (aa)	-	F7D4W9

Gene Model

Click here to download ENSXETG00000027221's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000027221's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000027221	-	100	86.310	ENSXETG00000022831	pabpc1l	58	86.310
ENSXETG00000027221	-	100	93.452	ENSXETG00000006635	pabpc1	61	93.452
ENSXETG00000027221	-	93	32.768	ENSXETG00000010234	tial1	65	32.768
ENSXETG00000027221	-	93	36.765	ENSXETG00000016741	elavl3	60	36.765
ENSXETG00000027221	-	100	90.476	ENSXETG00000010946	pabpc4	59	90.476
ENSXETG00000027221	-	93	36.765	ENSXETG00000009387	elavl2	95	31.915
ENSXETG00000027221	-	94	33.113	ENSXETG00000008752	elavl1	90	33.113
ENSXETG00000027221	-	93	31.977	ENSXETG00000008514	tia1	75	31.844
ENSXETG00000027221	-	97	36.765	ENSXETG00000008680	elavl4	65	36.765
ENSXETG00000027221	-	54	31.111	ENSXETG00000019384	ncbp2	58	31.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000027221	-	100	97.024	ENSG00000090621	PABPC4	100	97.674	Homo_sapiens
ENSXETG00000027221	-	100	96.429	ENSAPOG00000001161	pabpc4	68	96.429	Acanthochromis_polyacanthus
ENSXETG00000027221	-	100	96.429	ENSAMEG00000011535	-	61	96.429	Ailuropoda_melanoleuca
ENSXETG00000027221	-	100	96.429	ENSACIG00000023343	pabpc4	67	96.429	Amphilophus_citrinellus
ENSXETG00000027221	-	100	96.429	ENSAOCG00000021529	pabpc4	68	96.429	Amphiprion_ocellaris
ENSXETG00000027221	-	100	96.429	ENSAPEG00000019196	pabpc4	68	96.429	Amphiprion_percula
ENSXETG00000027221	-	100	96.429	ENSATEG00000007402	pabpc4	62	96.429	Anabas_testudineus
ENSXETG00000027221	-	100	95.238	ENSAPLG00000009729	-	61	95.238	Anas_platyrhynchos
ENSXETG00000027221	-	98	100.000	ENSACAG00000002544	PABPC4	59	100.000	Anolis_carolinensis
ENSXETG00000027221	-	100	97.024	ENSANAG00000025079	PABPC4	59	97.024	Aotus_nancymaae
ENSXETG00000027221	-	100	96.429	ENSACLG00000019558	pabpc4	67	96.429	Astatotilapia_calliptera
ENSXETG00000027221	-	98	98.182	ENSAMXG00000018779	pabpc4	63	98.182	Astyanax_mexicanus
ENSXETG00000027221	-	100	97.024	ENSBTAG00000017125	PABPC4	58	97.024	Bos_taurus
ENSXETG00000027221	-	99	84.431	ENSBTAG00000048536	-	93	84.431	Bos_taurus
ENSXETG00000027221	-	100	97.024	ENSCJAG00000002512	-	59	97.024	Callithrix_jacchus
ENSXETG00000027221	-	100	97.024	ENSCAFG00000003081	PABPC4	61	97.024	Canis_familiaris
ENSXETG00000027221	-	100	97.024	ENSCAFG00020004161	PABPC4	61	97.024	Canis_lupus_dingo
ENSXETG00000027221	-	100	84.524	ENSCHIG00000023385	-	54	84.524	Capra_hircus
ENSXETG00000027221	-	100	97.024	ENSCHIG00000019398	-	56	97.024	Capra_hircus
ENSXETG00000027221	-	100	97.024	ENSTSYG00000006532	PABPC4	61	97.024	Carlito_syrichta
ENSXETG00000027221	-	99	97.590	ENSCAPG00000015984	PABPC4	64	98.182	Cavia_aperea
ENSXETG00000027221	-	100	97.024	ENSCPOG00000009552	PABPC4	61	97.024	Cavia_porcellus
ENSXETG00000027221	-	100	97.024	ENSCCAG00000037306	PABPC4	59	97.024	Cebus_capucinus
ENSXETG00000027221	-	100	97.024	ENSCATG00000042164	PABPC4	59	97.024	Cercocebus_atys
ENSXETG00000027221	-	100	97.024	ENSCLAG00000011899	PABPC4	61	97.024	Chinchilla_lanigera
ENSXETG00000027221	-	100	97.024	ENSCSAG00000001135	PABPC4	56	97.024	Chlorocebus_sabaeus
ENSXETG00000027221	-	98	97.087	ENSCHOG00000005327	PABPC4	60	97.087	Choloepus_hoffmanni
ENSXETG00000027221	-	100	99.405	ENSCPBG00000001038	PABPC4	61	99.405	Chrysemys_picta_bellii
ENSXETG00000027221	-	98	98.113	ENSCANG00000034177	PABPC4	58	98.113	Colobus_angolensis_palliatus
ENSXETG00000027221	-	100	97.024	ENSCGRG00001018166	Pabpc4	63	97.024	Cricetulus_griseus_chok1gshd
ENSXETG00000027221	-	98	98.113	ENSCGRG00000009777	Pabpc4	62	98.113	Cricetulus_griseus_crigri
ENSXETG00000027221	-	100	96.429	ENSCSEG00000000130	pabpc4	67	96.429	Cynoglossus_semilaevis
ENSXETG00000027221	-	98	98.113	ENSCVAG00000019246	pabpc4	67	98.113	Cyprinodon_variegatus
ENSXETG00000027221	-	98	98.171	ENSDARG00000059259	pabpc4	69	98.171	Danio_rerio
ENSXETG00000027221	-	98	97.938	ENSDNOG00000018444	-	59	97.938	Dasypus_novemcinctus
ENSXETG00000027221	-	100	97.024	ENSDORG00000011581	Pabpc4	60	97.024	Dipodomys_ordii
ENSXETG00000027221	-	100	92.262	ENSEBUG00000000992	pabpc4	66	92.262	Eptatretus_burgeri
ENSXETG00000027221	-	100	93.452	ENSEBUG00000013782	pabpc4	61	93.452	Eptatretus_burgeri
ENSXETG00000027221	-	100	97.024	ENSEASG00005014119	PABPC4	58	97.024	Equus_asinus_asinus
ENSXETG00000027221	-	100	97.024	ENSECAG00000009396	PABPC4	58	97.024	Equus_caballus
ENSXETG00000027221	-	100	96.429	ENSEEUG00000002962	PABPC4	56	96.429	Erinaceus_europaeus
ENSXETG00000027221	-	100	95.266	ENSELUG00000003195	pabpc4	66	95.266	Esox_lucius
ENSXETG00000027221	-	100	97.024	ENSFCAG00000015254	-	61	97.024	Felis_catus
ENSXETG00000027221	-	100	98.810	ENSFALG00000000543	PABPC4	58	98.810	Ficedula_albicollis
ENSXETG00000027221	-	100	97.024	ENSFDAG00000020016	-	58	97.024	Fukomys_damarensis
ENSXETG00000027221	-	100	96.429	ENSFHEG00000007548	pabpc4	68	96.429	Fundulus_heteroclitus
ENSXETG00000027221	-	100	95.858	ENSGMOG00000019025	pabpc4	67	95.858	Gadus_morhua
ENSXETG00000027221	-	100	98.214	ENSGALG00000003800	PABPC4	61	98.214	Gallus_gallus
ENSXETG00000027221	-	98	97.902	ENSGAFG00000018195	pabpc4	84	97.484	Gambusia_affinis
ENSXETG00000027221	-	100	95.833	ENSGACG00000007179	pabpc4	62	95.833	Gasterosteus_aculeatus
ENSXETG00000027221	-	100	98.810	ENSGAGG00000001888	PABPC4	61	98.810	Gopherus_agassizii
ENSXETG00000027221	-	100	97.024	ENSGGOG00000004002	PABPC4	59	97.024	Gorilla_gorilla
ENSXETG00000027221	-	100	96.429	ENSHBUG00000020206	pabpc4	67	96.429	Haplochromis_burtoni
ENSXETG00000027221	-	100	97.024	ENSHGLG00000011162	PABPC4	61	97.024	Heterocephalus_glaber_female
ENSXETG00000027221	-	100	97.024	ENSHGLG00100001580	PABPC4	61	97.024	Heterocephalus_glaber_male
ENSXETG00000027221	-	100	96.429	ENSHCOG00000012694	pabpc4	68	96.429	Hippocampus_comes
ENSXETG00000027221	-	100	97.024	ENSIPUG00000016620	pabpc4	67	97.024	Ictalurus_punctatus
ENSXETG00000027221	-	100	97.024	ENSSTOG00000010416	PABPC4	64	97.024	Ictidomys_tridecemlineatus
ENSXETG00000027221	-	100	96.429	ENSJJAG00000007781	Pabpc4	60	96.429	Jaculus_jaculus
ENSXETG00000027221	-	100	96.429	ENSKMAG00000013597	pabpc4	70	96.429	Kryptolebias_marmoratus
ENSXETG00000027221	-	100	96.450	ENSLBEG00000013654	pabpc4	65	96.450	Labrus_bergylta
ENSXETG00000027221	-	100	98.810	ENSLACG00000011907	PABPC4	61	98.810	Latimeria_chalumnae
ENSXETG00000027221	-	100	97.633	ENSLOCG00000001877	pabpc4	67	97.633	Lepisosteus_oculatus
ENSXETG00000027221	-	100	97.024	ENSLAFG00000000151	PABPC4	63	97.024	Loxodonta_africana
ENSXETG00000027221	-	100	97.024	ENSMFAG00000041481	PABPC4	59	97.024	Macaca_fascicularis
ENSXETG00000027221	-	100	97.024	ENSMMUG00000007497	PABPC4	56	97.024	Macaca_mulatta
ENSXETG00000027221	-	100	97.024	ENSMNEG00000043054	PABPC4	59	97.024	Macaca_nemestrina
ENSXETG00000027221	-	100	97.024	ENSMLEG00000040716	PABPC4	59	97.024	Mandrillus_leucophaeus
ENSXETG00000027221	-	100	96.429	ENSMAMG00000010025	pabpc4	70	96.429	Mastacembelus_armatus
ENSXETG00000027221	-	100	96.429	ENSMZEG00005006141	pabpc4	67	96.429	Maylandia_zebra
ENSXETG00000027221	-	98	100.000	ENSMGAG00000005408	PABPC4	55	100.000	Meleagris_gallopavo
ENSXETG00000027221	-	90	82.119	ENSMAUG00000004089	-	80	82.119	Mesocricetus_auratus
ENSXETG00000027221	-	100	62.500	ENSMAUG00000019763	-	58	62.500	Mesocricetus_auratus
ENSXETG00000027221	-	98	72.165	ENSMICG00000036729	-	60	72.165	Microcebus_murinus
ENSXETG00000027221	-	100	97.024	ENSMICG00000016633	-	71	97.024	Microcebus_murinus
ENSXETG00000027221	-	100	97.024	ENSMOCG00000006763	Pabpc4	62	97.024	Microtus_ochrogaster
ENSXETG00000027221	-	100	96.429	ENSMMOG00000002363	pabpc4	69	96.429	Mola_mola
ENSXETG00000027221	-	100	73.964	ENSMODG00000018051	-	91	73.964	Monodelphis_domestica
ENSXETG00000027221	-	100	98.810	ENSMODG00000017657	-	59	98.810	Monodelphis_domestica
ENSXETG00000027221	-	100	96.429	ENSMALG00000011017	pabpc4	67	96.429	Monopterus_albus
ENSXETG00000027221	-	98	95.876	MGP_CAROLIEiJ_G0024864	-	52	95.876	Mus_caroli
ENSXETG00000027221	-	100	95.833	MGP_CAROLIEiJ_G0026435	-	100	97.872	Mus_caroli
ENSXETG00000027221	-	100	96.429	ENSMUSG00000011257	Pabpc4	100	96.429	Mus_musculus
ENSXETG00000027221	-	98	98.113	MGP_PahariEiJ_G0028765	Pabpc4	100	98.582	Mus_pahari
ENSXETG00000027221	-	98	97.484	MGP_SPRETEiJ_G0027415	Pabpc4	100	97.872	Mus_spretus
ENSXETG00000027221	-	100	97.024	ENSMPUG00000014414	-	58	97.024	Mustela_putorius_furo
ENSXETG00000027221	-	100	97.024	ENSMLUG00000012068	PABPC4	63	97.024	Myotis_lucifugus
ENSXETG00000027221	-	100	97.024	ENSNGAG00000018292	Pabpc4	60	97.024	Nannospalax_galili
ENSXETG00000027221	-	95	98.113	ENSNBRG00000009708	pabpc4	97	98.113	Neolamprologus_brichardi
ENSXETG00000027221	-	100	97.024	ENSNLEG00000011928	PABPC4	59	97.024	Nomascus_leucogenys
ENSXETG00000027221	-	100	97.024	ENSOPRG00000011984	PABPC4	60	97.024	Ochotona_princeps
ENSXETG00000027221	-	80	83.704	ENSODEG00000013457	-	96	83.704	Octodon_degus
ENSXETG00000027221	-	100	97.024	ENSODEG00000006592	-	64	97.024	Octodon_degus
ENSXETG00000027221	-	100	96.429	ENSONIG00000008176	pabpc4	67	96.429	Oreochromis_niloticus
ENSXETG00000027221	-	100	98.810	ENSOANG00000010001	PABPC4	61	98.810	Ornithorhynchus_anatinus
ENSXETG00000027221	-	100	97.024	ENSOCUG00000000562	PABPC4	54	97.024	Oryctolagus_cuniculus
ENSXETG00000027221	-	100	96.429	ENSORLG00000017479	pabpc4	67	96.429	Oryzias_latipes
ENSXETG00000027221	-	100	96.429	ENSORLG00020018644	pabpc4	67	96.429	Oryzias_latipes_hni
ENSXETG00000027221	-	100	96.429	ENSORLG00015015042	pabpc4	67	96.429	Oryzias_latipes_hsok
ENSXETG00000027221	-	100	96.429	ENSOMEG00000014410	pabpc4	67	96.429	Oryzias_melastigma
ENSXETG00000027221	-	100	97.024	ENSOGAG00000004067	PABPC4	60	97.024	Otolemur_garnettii
ENSXETG00000027221	-	100	97.024	ENSOARG00000020060	PABPC4	56	97.024	Ovis_aries
ENSXETG00000027221	-	100	97.024	ENSPPAG00000043625	PABPC4	59	97.024	Pan_paniscus
ENSXETG00000027221	-	100	97.024	ENSPPRG00000024727	PABPC4	61	97.024	Panthera_pardus
ENSXETG00000027221	-	100	97.024	ENSPTIG00000005829	PABPC4	61	97.024	Panthera_tigris_altaica
ENSXETG00000027221	-	100	97.024	ENSPTRG00000000573	PABPC4	59	97.024	Pan_troglodytes
ENSXETG00000027221	-	100	97.024	ENSPANG00000009484	PABPC4	59	97.024	Papio_anubis
ENSXETG00000027221	-	100	97.041	ENSPKIG00000025356	pabpc4	69	97.041	Paramormyrops_kingsleyae
ENSXETG00000027221	-	100	99.405	ENSPSIG00000016892	PABPC4	61	99.405	Pelodiscus_sinensis
ENSXETG00000027221	-	100	96.429	ENSPMGG00000009073	pabpc4	70	96.429	Periophthalmus_magnuspinnatus
ENSXETG00000027221	-	98	97.576	ENSPEMG00000024193	-	57	97.576	Peromyscus_maniculatus_bairdii
ENSXETG00000027221	-	100	97.024	ENSPEMG00000023569	-	63	97.024	Peromyscus_maniculatus_bairdii
ENSXETG00000027221	-	100	94.578	ENSPMAG00000002836	pabpc4	68	94.578	Petromyzon_marinus
ENSXETG00000027221	-	97	32.673	ENSPMAG00000007885	pabpc4	50	32.673	Petromyzon_marinus
ENSXETG00000027221	-	100	98.810	ENSPCIG00000020674	PABPC4	70	100.000	Phascolarctos_cinereus
ENSXETG00000027221	-	100	95.833	ENSPFOG00000002682	pabpc4	68	95.833	Poecilia_formosa
ENSXETG00000027221	-	100	95.833	ENSPLAG00000010112	pabpc4	68	95.833	Poecilia_latipinna
ENSXETG00000027221	-	100	95.833	ENSPMEG00000019739	pabpc4	68	95.833	Poecilia_mexicana
ENSXETG00000027221	-	100	95.833	ENSPREG00000001589	pabpc4	68	95.833	Poecilia_reticulata
ENSXETG00000027221	-	100	97.024	ENSPPYG00000001506	PABPC4	56	97.024	Pongo_abelii
ENSXETG00000027221	-	100	97.024	ENSPCAG00000003341	PABPC4	55	97.024	Procavia_capensis
ENSXETG00000027221	-	96	86.567	ENSPCOG00000025882	-	57	86.567	Propithecus_coquereli
ENSXETG00000027221	-	100	97.024	ENSPCOG00000023725	-	61	97.024	Propithecus_coquereli
ENSXETG00000027221	-	98	98.058	ENSPVAG00000002187	PABPC4	54	98.058	Pteropus_vampyrus
ENSXETG00000027221	-	100	96.429	ENSPNYG00000006134	pabpc4	67	96.429	Pundamilia_nyererei
ENSXETG00000027221	-	98	97.561	ENSPNAG00000024355	pabpc4	66	97.561	Pygocentrus_nattereri
ENSXETG00000027221	-	100	93.452	ENSRNOG00000028592	AABR07035074.1	56	93.452	Rattus_norvegicus
ENSXETG00000027221	-	100	96.429	ENSRNOG00000015642	Pabpc4	60	96.429	Rattus_norvegicus
ENSXETG00000027221	-	100	97.024	ENSRBIG00000039761	PABPC4	59	97.024	Rhinopithecus_bieti
ENSXETG00000027221	-	100	97.024	ENSRROG00000033355	PABPC4	59	97.024	Rhinopithecus_roxellana
ENSXETG00000027221	-	100	97.024	ENSSBOG00000026193	PABPC4	60	97.024	Saimiri_boliviensis_boliviensis
ENSXETG00000027221	-	100	98.810	ENSSHAG00000018139	PABPC4	61	98.810	Sarcophilus_harrisii
ENSXETG00000027221	-	98	98.601	ENSSFOG00015023514	pabpc4	65	98.601	Scleropages_formosus
ENSXETG00000027221	-	100	96.429	ENSSMAG00000009007	pabpc4	67	96.429	Scophthalmus_maximus
ENSXETG00000027221	-	100	96.429	ENSSDUG00000012683	pabpc4	67	96.429	Seriola_dumerili
ENSXETG00000027221	-	100	96.429	ENSSLDG00000013025	pabpc4	67	96.429	Seriola_lalandi_dorsalis
ENSXETG00000027221	-	100	73.810	ENSSARG00000000310	PABPC4	57	73.810	Sorex_araneus
ENSXETG00000027221	-	100	98.810	ENSSPUG00000003204	PABPC4	62	98.810	Sphenodon_punctatus
ENSXETG00000027221	-	100	96.429	ENSSPAG00000009252	pabpc4	68	96.429	Stegastes_partitus
ENSXETG00000027221	-	100	97.024	ENSSSCG00000003660	-	61	97.024	Sus_scrofa
ENSXETG00000027221	-	100	98.810	ENSTGUG00000001266	PABPC4	55	98.810	Taeniopygia_guttata
ENSXETG00000027221	-	100	96.429	ENSTRUG00000005907	pabpc4	62	96.429	Takifugu_rubripes
ENSXETG00000027221	-	100	96.429	ENSTNIG00000016902	pabpc4	62	96.429	Tetraodon_nigroviridis
ENSXETG00000027221	-	100	97.024	ENSUAMG00000000303	PABPC4	61	97.024	Ursus_americanus
ENSXETG00000027221	-	100	97.024	ENSUMAG00000019585	PABPC4	73	97.024	Ursus_maritimus
ENSXETG00000027221	-	100	55.952	ENSVPAG00000010041	PABPC4	51	55.952	Vicugna_pacos
ENSXETG00000027221	-	100	97.024	ENSVVUG00000005215	PABPC4	61	97.024	Vulpes_vulpes
ENSXETG00000027221	-	98	98.077	ENSXCOG00000013190	pabpc4	63	98.077	Xiphophorus_couchianus
ENSXETG00000027221	-	100	95.833	ENSXMAG00000019007	pabpc4	68	95.833	Xiphophorus_maculatus