EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000027354 (Gene tree)
Gene ID: -
Gene Symbol: snrpd1
Alias: -
Full Name: Xenopus tropicalis small nuclear ribonucleoprotein D1 polypeptide (snrpd1)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 6659 bases
Position: chrGL173651.1:166584-173242
Accession: NM_001004780
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000057088	LSM	PF01423.22	4.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000057088	-	1400	-	ENSXETP00000057088	119 (aa)	-	Q6GLH6

Gene Model

Click here to download ENSXETG00000027354's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000027354's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000027354	snrpd1	87	33.654	ENSXETG00000027631	lsm10	61	33.784
ENSXETG00000027354	snrpd1	56	33.803	ENSXETG00000024918	snrpd3	55	33.803

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000027354	snrpd1	100	98.319	ENSG00000167088	SNRPD1	100	98.667	Homo_sapiens
ENSXETG00000027354	snrpd1	94	94.643	ENSAPOG00000019446	snrpd1	61	94.643	Acanthochromis_polyacanthus
ENSXETG00000027354	snrpd1	98	96.581	ENSAMEG00000002576	SNRPD1	100	96.581	Ailuropoda_melanoleuca
ENSXETG00000027354	snrpd1	88	94.286	ENSACIG00000011263	snrpd1	94	94.286	Amphilophus_citrinellus
ENSXETG00000027354	snrpd1	94	94.643	ENSAOCG00000007406	snrpd1	94	94.643	Amphiprion_ocellaris
ENSXETG00000027354	snrpd1	88	94.286	ENSAPEG00000012539	SNRPD1	94	94.286	Amphiprion_percula
ENSXETG00000027354	snrpd1	94	90.179	ENSAPEG00000014961	snrpd1	94	90.179	Amphiprion_percula
ENSXETG00000027354	snrpd1	94	94.643	ENSATEG00000014399	snrpd1	94	94.643	Anabas_testudineus
ENSXETG00000027354	snrpd1	97	98.261	ENSAPLG00000012256	SNRPD1	97	98.261	Anas_platyrhynchos
ENSXETG00000027354	snrpd1	100	98.319	ENSACAG00000006364	SNRPD1	100	98.319	Anolis_carolinensis
ENSXETG00000027354	snrpd1	100	98.319	ENSANAG00000025641	SNRPD1	100	98.319	Aotus_nancymaae
ENSXETG00000027354	snrpd1	88	94.286	ENSACLG00000017406	snrpd1	94	94.286	Astatotilapia_calliptera
ENSXETG00000027354	snrpd1	94	95.536	ENSAMXG00000004589	snrpd1	94	95.536	Astyanax_mexicanus
ENSXETG00000027354	snrpd1	81	95.833	ENSBTAG00000012376	-	72	95.833	Bos_taurus
ENSXETG00000027354	snrpd1	79	92.553	ENSBTAG00000055316	-	81	92.553	Bos_taurus
ENSXETG00000027354	snrpd1	100	98.319	ENSBTAG00000008292	SNRPD1	100	98.319	Bos_taurus
ENSXETG00000027354	snrpd1	94	94.643	ENSBTAG00000047266	-	94	94.643	Bos_taurus
ENSXETG00000027354	snrpd1	74	80.682	WBGene00004916	snr-3	76	76.042	Caenorhabditis_elegans
ENSXETG00000027354	snrpd1	100	98.319	ENSCJAG00000042955	SNRPD1	100	98.319	Callithrix_jacchus
ENSXETG00000027354	snrpd1	100	98.319	ENSCAFG00000018247	SNRPD1	100	98.319	Canis_familiaris
ENSXETG00000027354	snrpd1	80	97.895	ENSCAFG00020015914	SNRPD1	74	97.895	Canis_lupus_dingo
ENSXETG00000027354	snrpd1	100	95.798	ENSCHIG00000005557	SNRPD1	100	95.798	Capra_hircus
ENSXETG00000027354	snrpd1	100	98.319	ENSTSYG00000030028	SNRPD1	100	98.319	Carlito_syrichta
ENSXETG00000027354	snrpd1	97	97.391	ENSCAPG00000008103	SNRPD1	99	97.391	Cavia_aperea
ENSXETG00000027354	snrpd1	100	98.319	ENSCPOG00000004679	SNRPD1	100	98.319	Cavia_porcellus
ENSXETG00000027354	snrpd1	100	98.319	ENSCCAG00000032658	SNRPD1	100	98.319	Cebus_capucinus
ENSXETG00000027354	snrpd1	81	93.750	ENSCCAG00000005390	-	81	93.750	Cebus_capucinus
ENSXETG00000027354	snrpd1	94	94.643	ENSCCAG00000016652	-	94	94.643	Cebus_capucinus
ENSXETG00000027354	snrpd1	100	97.479	ENSCCAG00000020611	-	100	97.479	Cebus_capucinus
ENSXETG00000027354	snrpd1	100	98.319	ENSCATG00000039978	SNRPD1	100	98.319	Cercocebus_atys
ENSXETG00000027354	snrpd1	100	98.319	ENSCLAG00000008691	SNRPD1	100	98.319	Chinchilla_lanigera
ENSXETG00000027354	snrpd1	100	98.319	ENSCSAG00000017654	SNRPD1	100	98.319	Chlorocebus_sabaeus
ENSXETG00000027354	snrpd1	100	98.319	ENSCPBG00000023143	SNRPD1	100	98.319	Chrysemys_picta_bellii
ENSXETG00000027354	snrpd1	72	87.209	ENSCING00000024100	-	69	87.209	Ciona_intestinalis
ENSXETG00000027354	snrpd1	73	85.057	ENSCSAVG00000004578	-	70	85.057	Ciona_savignyi
ENSXETG00000027354	snrpd1	81	72.917	ENSCGRG00001009945	-	85	72.917	Cricetulus_griseus_chok1gshd
ENSXETG00000027354	snrpd1	100	98.319	ENSCGRG00001021055	-	100	98.319	Cricetulus_griseus_chok1gshd
ENSXETG00000027354	snrpd1	100	98.319	ENSCGRG00000000490	-	100	98.319	Cricetulus_griseus_crigri
ENSXETG00000027354	snrpd1	81	72.917	ENSCGRG00000006224	-	85	72.917	Cricetulus_griseus_crigri
ENSXETG00000027354	snrpd1	80	92.632	ENSCSEG00000018141	snrpd1	81	92.708	Cynoglossus_semilaevis
ENSXETG00000027354	snrpd1	94	94.643	ENSCVAG00000000534	snrpd1	94	94.643	Cyprinodon_variegatus
ENSXETG00000027354	snrpd1	94	95.536	ENSDARG00000011648	snrpd1	94	95.536	Danio_rerio
ENSXETG00000027354	snrpd1	100	98.319	ENSDNOG00000040310	SNRPD1	100	98.319	Dasypus_novemcinctus
ENSXETG00000027354	snrpd1	100	98.319	ENSDORG00000008349	Snrpd1	100	98.319	Dipodomys_ordii
ENSXETG00000027354	snrpd1	79	81.915	FBgn0261933	SmD1	76	81.915	Drosophila_melanogaster
ENSXETG00000027354	snrpd1	74	98.864	ENSETEG00000011689	SNRPD1	74	98.864	Echinops_telfairi
ENSXETG00000027354	snrpd1	94	92.857	ENSEBUG00000003170	snrpd1	94	92.857	Eptatretus_burgeri
ENSXETG00000027354	snrpd1	94	98.214	ENSEASG00005002433	SNRPD1	100	98.214	Equus_asinus_asinus
ENSXETG00000027354	snrpd1	94	98.214	ENSECAG00000014373	SNRPD1	100	98.214	Equus_caballus
ENSXETG00000027354	snrpd1	75	97.753	ENSEEUG00000004987	SNRPD1	100	97.753	Erinaceus_europaeus
ENSXETG00000027354	snrpd1	93	83.784	ENSELUG00000000088	snrpd1	79	93.617	Esox_lucius
ENSXETG00000027354	snrpd1	100	98.319	ENSFCAG00000012352	SNRPD1	100	98.319	Felis_catus
ENSXETG00000027354	snrpd1	94	98.214	ENSFALG00000002646	SNRPD1	100	98.214	Ficedula_albicollis
ENSXETG00000027354	snrpd1	94	95.536	ENSGMOG00000015607	snrpd1	94	95.536	Gadus_morhua
ENSXETG00000027354	snrpd1	100	98.319	ENSGALG00000041334	SNRPD1	100	98.319	Gallus_gallus
ENSXETG00000027354	snrpd1	94	94.643	ENSGAFG00000011171	snrpd1	94	94.643	Gambusia_affinis
ENSXETG00000027354	snrpd1	94	95.536	ENSGACG00000005201	SNRPD1	94	95.536	Gasterosteus_aculeatus
ENSXETG00000027354	snrpd1	100	98.319	ENSGAGG00000011197	SNRPD1	100	98.319	Gopherus_agassizii
ENSXETG00000027354	snrpd1	81	92.708	ENSGGOG00000026706	-	80	92.708	Gorilla_gorilla
ENSXETG00000027354	snrpd1	100	98.319	ENSGGOG00000041053	SNRPD1	100	98.319	Gorilla_gorilla
ENSXETG00000027354	snrpd1	94	94.643	ENSHBUG00000003236	snrpd1	94	94.643	Haplochromis_burtoni
ENSXETG00000027354	snrpd1	100	98.319	ENSHGLG00000007152	SNRPD1	100	98.319	Heterocephalus_glaber_female
ENSXETG00000027354	snrpd1	100	98.319	ENSHGLG00100008618	SNRPD1	100	98.319	Heterocephalus_glaber_male
ENSXETG00000027354	snrpd1	94	94.643	ENSIPUG00000003576	snrpd1	94	94.643	Ictalurus_punctatus
ENSXETG00000027354	snrpd1	100	98.319	ENSSTOG00000000485	SNRPD1	100	98.319	Ictidomys_tridecemlineatus
ENSXETG00000027354	snrpd1	100	98.319	ENSJJAG00000017698	Snrpd1	100	98.319	Jaculus_jaculus
ENSXETG00000027354	snrpd1	94	94.643	ENSKMAG00000005987	snrpd1	94	94.643	Kryptolebias_marmoratus
ENSXETG00000027354	snrpd1	94	94.643	ENSLBEG00000003327	snrpd1	94	94.643	Labrus_bergylta
ENSXETG00000027354	snrpd1	100	98.319	ENSLACG00000001955	SNRPD1	100	98.319	Latimeria_chalumnae
ENSXETG00000027354	snrpd1	92	95.455	ENSLOCG00000002003	snrpd1	94	95.455	Lepisosteus_oculatus
ENSXETG00000027354	snrpd1	93	96.396	ENSLAFG00000005819	SNRPD1	94	96.396	Loxodonta_africana
ENSXETG00000027354	snrpd1	100	98.319	ENSMFAG00000042080	SNRPD1	100	98.319	Macaca_fascicularis
ENSXETG00000027354	snrpd1	96	98.246	ENSMMUG00000003992	SNRPD1	97	98.246	Macaca_mulatta
ENSXETG00000027354	snrpd1	100	98.319	ENSMNEG00000041296	SNRPD1	100	98.319	Macaca_nemestrina
ENSXETG00000027354	snrpd1	100	98.319	ENSMLEG00000028659	SNRPD1	100	98.319	Mandrillus_leucophaeus
ENSXETG00000027354	snrpd1	94	94.643	ENSMAMG00000012971	snrpd1	94	94.643	Mastacembelus_armatus
ENSXETG00000027354	snrpd1	94	94.643	ENSMZEG00005004685	snrpd1	94	94.643	Maylandia_zebra
ENSXETG00000027354	snrpd1	97	98.261	ENSMGAG00000011598	SNRPD1	95	98.261	Meleagris_gallopavo
ENSXETG00000027354	snrpd1	82	92.784	ENSMAUG00000006829	-	62	92.784	Mesocricetus_auratus
ENSXETG00000027354	snrpd1	81	81.250	ENSMAUG00000016502	-	86	81.250	Mesocricetus_auratus
ENSXETG00000027354	snrpd1	81	81.250	ENSMAUG00000016467	-	86	81.250	Mesocricetus_auratus
ENSXETG00000027354	snrpd1	100	98.319	ENSMICG00000044066	SNRPD1	100	98.319	Microcebus_murinus
ENSXETG00000027354	snrpd1	100	98.319	ENSMOCG00000017367	Snrpd1	100	98.319	Microtus_ochrogaster
ENSXETG00000027354	snrpd1	94	94.643	ENSMMOG00000019089	snrpd1	94	94.643	Mola_mola
ENSXETG00000027354	snrpd1	100	98.319	ENSMODG00000021487	SNRPD1	100	98.319	Monodelphis_domestica
ENSXETG00000027354	snrpd1	94	94.643	ENSMALG00000014459	snrpd1	94	94.643	Monopterus_albus
ENSXETG00000027354	snrpd1	100	98.319	MGP_CAROLIEiJ_G0021994	Snrpd1	100	98.319	Mus_caroli
ENSXETG00000027354	snrpd1	100	98.319	ENSMUSG00000002477	Snrpd1	100	98.319	Mus_musculus
ENSXETG00000027354	snrpd1	100	98.319	MGP_PahariEiJ_G0018731	Snrpd1	100	98.319	Mus_pahari
ENSXETG00000027354	snrpd1	100	98.319	MGP_SPRETEiJ_G0022910	Snrpd1	100	98.319	Mus_spretus
ENSXETG00000027354	snrpd1	98	96.581	ENSMPUG00000005567	-	100	96.581	Mustela_putorius_furo
ENSXETG00000027354	snrpd1	100	97.479	ENSMPUG00000020041	-	100	97.479	Mustela_putorius_furo
ENSXETG00000027354	snrpd1	97	95.690	ENSMLUG00000009124	SNRPD1	90	95.690	Myotis_lucifugus
ENSXETG00000027354	snrpd1	100	98.319	ENSNGAG00000023946	Snrpd1	100	98.319	Nannospalax_galili
ENSXETG00000027354	snrpd1	79	93.617	ENSNBRG00000012119	snrpd1	78	93.617	Neolamprologus_brichardi
ENSXETG00000027354	snrpd1	100	95.798	ENSNLEG00000031430	SNRPD1	100	95.798	Nomascus_leucogenys
ENSXETG00000027354	snrpd1	100	98.319	ENSODEG00000005764	SNRPD1	100	98.319	Octodon_degus
ENSXETG00000027354	snrpd1	94	94.643	ENSONIG00000002486	snrpd1	94	94.643	Oreochromis_niloticus
ENSXETG00000027354	snrpd1	82	88.776	ENSOANG00000004638	-	82	88.776	Ornithorhynchus_anatinus
ENSXETG00000027354	snrpd1	98	96.581	ENSOCUG00000023761	-	100	96.581	Oryctolagus_cuniculus
ENSXETG00000027354	snrpd1	100	97.479	ENSOCUG00000014399	-	100	97.479	Oryctolagus_cuniculus
ENSXETG00000027354	snrpd1	88	94.286	ENSORLG00000012516	snrpd1	94	94.286	Oryzias_latipes
ENSXETG00000027354	snrpd1	94	94.643	ENSORLG00020005743	snrpd1	94	94.643	Oryzias_latipes_hni
ENSXETG00000027354	snrpd1	94	94.643	ENSORLG00015013402	snrpd1	94	94.643	Oryzias_latipes_hsok
ENSXETG00000027354	snrpd1	94	94.643	ENSOMEG00000011571	snrpd1	94	94.643	Oryzias_melastigma
ENSXETG00000027354	snrpd1	100	94.958	ENSOGAG00000007833	SNRPD1	100	94.958	Otolemur_garnettii
ENSXETG00000027354	snrpd1	100	93.277	ENSOARG00000003413	-	85	93.277	Ovis_aries
ENSXETG00000027354	snrpd1	100	98.319	ENSPPAG00000042593	SNRPD1	100	98.319	Pan_paniscus
ENSXETG00000027354	snrpd1	100	98.319	ENSPPRG00000002399	SNRPD1	100	98.319	Panthera_pardus
ENSXETG00000027354	snrpd1	94	71.429	ENSPPRG00000005009	-	92	71.429	Panthera_pardus
ENSXETG00000027354	snrpd1	96	98.246	ENSPTIG00000013206	SNRPD1	100	98.246	Panthera_tigris_altaica
ENSXETG00000027354	snrpd1	100	98.319	ENSPTRG00000009909	SNRPD1	100	98.319	Pan_troglodytes
ENSXETG00000027354	snrpd1	86	93.137	ENSPTRG00000050159	-	87	93.137	Pan_troglodytes
ENSXETG00000027354	snrpd1	100	98.319	ENSPANG00000023478	SNRPD1	100	98.319	Papio_anubis
ENSXETG00000027354	snrpd1	94	95.536	ENSPKIG00000003985	SNRPD1	94	95.536	Paramormyrops_kingsleyae
ENSXETG00000027354	snrpd1	88	93.333	ENSPKIG00000021610	snrpd1	94	93.333	Paramormyrops_kingsleyae
ENSXETG00000027354	snrpd1	94	94.643	ENSPMGG00000001862	snrpd1	94	94.643	Periophthalmus_magnuspinnatus
ENSXETG00000027354	snrpd1	100	98.319	ENSPEMG00000014773	-	100	98.319	Peromyscus_maniculatus_bairdii
ENSXETG00000027354	snrpd1	86	82.692	ENSPMAG00000003938	-	85	82.692	Petromyzon_marinus
ENSXETG00000027354	snrpd1	100	98.319	ENSPCIG00000020320	SNRPD1	100	98.319	Phascolarctos_cinereus
ENSXETG00000027354	snrpd1	81	93.750	ENSPFOG00000012448	SNRPD1	85	93.750	Poecilia_formosa
ENSXETG00000027354	snrpd1	81	93.750	ENSPLAG00000006738	snrpd1	85	93.750	Poecilia_latipinna
ENSXETG00000027354	snrpd1	81	93.750	ENSPMEG00000021942	snrpd1	85	93.750	Poecilia_mexicana
ENSXETG00000027354	snrpd1	94	94.643	ENSPREG00000007094	snrpd1	94	94.643	Poecilia_reticulata
ENSXETG00000027354	snrpd1	100	98.319	ENSPPYG00000025874	SNRPD1	100	98.319	Pongo_abelii
ENSXETG00000027354	snrpd1	100	98.319	ENSPCOG00000013327	SNRPD1	100	98.319	Propithecus_coquereli
ENSXETG00000027354	snrpd1	100	98.319	ENSPVAG00000005511	SNRPD1	80	98.319	Pteropus_vampyrus
ENSXETG00000027354	snrpd1	94	94.643	ENSPNAG00000017824	snrpd1	94	94.643	Pygocentrus_nattereri
ENSXETG00000027354	snrpd1	100	98.319	ENSRNOG00000013714	Snrpd1	100	98.319	Rattus_norvegicus
ENSXETG00000027354	snrpd1	100	98.319	ENSRBIG00000022996	SNRPD1	100	98.319	Rhinopithecus_bieti
ENSXETG00000027354	snrpd1	100	98.319	ENSRROG00000027640	SNRPD1	100	98.319	Rhinopithecus_roxellana
ENSXETG00000027354	snrpd1	100	98.319	ENSSBOG00000020998	SNRPD1	100	98.319	Saimiri_boliviensis_boliviensis
ENSXETG00000027354	snrpd1	100	98.319	ENSSHAG00000011791	SNRPD1	100	98.319	Sarcophilus_harrisii
ENSXETG00000027354	snrpd1	94	93.750	ENSSFOG00015008809	-	94	93.750	Scleropages_formosus
ENSXETG00000027354	snrpd1	94	93.750	ENSSFOG00015022253	-	94	93.750	Scleropages_formosus
ENSXETG00000027354	snrpd1	94	94.643	ENSSMAG00000008765	snrpd1	94	94.643	Scophthalmus_maximus
ENSXETG00000027354	snrpd1	91	93.519	ENSSDUG00000010521	snrpd1	92	93.519	Seriola_dumerili
ENSXETG00000027354	snrpd1	94	94.643	ENSSLDG00000011858	snrpd1	94	94.643	Seriola_lalandi_dorsalis
ENSXETG00000027354	snrpd1	56	97.015	ENSSARG00000004271	SNRPD1	100	97.015	Sorex_araneus
ENSXETG00000027354	snrpd1	100	98.319	ENSSPUG00000002824	SNRPD1	100	98.319	Sphenodon_punctatus
ENSXETG00000027354	snrpd1	88	94.286	ENSSPAG00000015229	snrpd1	94	94.286	Stegastes_partitus
ENSXETG00000027354	snrpd1	100	98.319	ENSSSCG00000003701	SNRPD1	100	98.319	Sus_scrofa
ENSXETG00000027354	snrpd1	97	98.261	ENSTGUG00000005095	SNRPD1	97	98.261	Taeniopygia_guttata
ENSXETG00000027354	snrpd1	88	95.238	ENSTRUG00000008977	snrpd1	94	95.238	Takifugu_rubripes
ENSXETG00000027354	snrpd1	81	90.625	ENSTNIG00000001224	snrpd1	92	90.625	Tetraodon_nigroviridis
ENSXETG00000027354	snrpd1	74	98.864	ENSTBEG00000013776	SNRPD1	100	98.864	Tupaia_belangeri
ENSXETG00000027354	snrpd1	97	98.261	ENSTTRG00000002654	SNRPD1	100	98.261	Tursiops_truncatus
ENSXETG00000027354	snrpd1	96	98.246	ENSUAMG00000013431	SNRPD1	97	98.246	Ursus_americanus
ENSXETG00000027354	snrpd1	100	98.319	ENSUMAG00000019740	SNRPD1	100	98.319	Ursus_maritimus
ENSXETG00000027354	snrpd1	100	98.319	ENSVPAG00000010056	SNRPD1	80	98.319	Vicugna_pacos
ENSXETG00000027354	snrpd1	94	98.214	ENSVVUG00000004009	SNRPD1	100	98.214	Vulpes_vulpes
ENSXETG00000027354	snrpd1	94	94.643	ENSXCOG00000020108	snrpd1	94	94.643	Xiphophorus_couchianus
ENSXETG00000027354	snrpd1	94	94.643	ENSXMAG00000003368	snrpd1	94	94.643	Xiphophorus_maculatus