EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSXETG00000027631 (Gene tree)
Gene ID: -
Gene Symbol: lsm10
Alias: -
Full Name: Xenopus tropicalis LSM10%2C U7 small nuclear RNA associated (lsm10)%2C mRNA.
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Plus strand
Length: 4904 bases
Position: chrGL173847.1:48967-53870
Accession: NM_001016243
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000057547	LSM	PF01423.22	2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000057547	-	685	-	ENSXETP00000057547	121 (aa)	-	B7ZUL0

Gene Model

Click here to download ENSXETG00000027631's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000027631's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSXETG00000027631	lsm10	61	33.784	ENSXETG00000027354	snrpd1	87	33.654
ENSXETG00000027631	lsm10	58	32.877	ENSXETG00000024077	lsm2	77	32.877

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000027631	lsm10	100	69.919	ENSG00000181817	LSM10	100	69.919	Homo_sapiens
ENSXETG00000027631	lsm10	100	69.919	ENSAMEG00000019854	LSM10	100	69.919	Ailuropoda_melanoleuca
ENSXETG00000027631	lsm10	94	62.931	ENSACIG00000015420	oscp1a	77	62.931	Amphilophus_citrinellus
ENSXETG00000027631	lsm10	96	62.712	ENSAOCG00000014654	-	98	62.712	Amphiprion_ocellaris
ENSXETG00000027631	lsm10	96	62.712	ENSAOCG00000015618	LSM10	98	62.712	Amphiprion_ocellaris
ENSXETG00000027631	lsm10	84	65.686	ENSAOCG00000015607	LSM10	79	65.686	Amphiprion_ocellaris
ENSXETG00000027631	lsm10	84	65.686	ENSAPEG00000021851	LSM10	79	65.686	Amphiprion_percula
ENSXETG00000027631	lsm10	96	62.712	ENSAPEG00000021845	-	98	62.712	Amphiprion_percula
ENSXETG00000027631	lsm10	94	58.621	ENSATEG00000006310	oscp1a	86	58.621	Anabas_testudineus
ENSXETG00000027631	lsm10	100	65.854	ENSACAG00000001231	LSM10	100	65.854	Anolis_carolinensis
ENSXETG00000027631	lsm10	93	71.429	ENSANAG00000031489	-	92	71.429	Aotus_nancymaae
ENSXETG00000027631	lsm10	100	69.106	ENSANAG00000018759	-	100	69.106	Aotus_nancymaae
ENSXETG00000027631	lsm10	96	63.559	ENSACLG00000004728	oscp1a	96	63.559	Astatotilapia_calliptera
ENSXETG00000027631	lsm10	96	64.957	ENSAMXG00000025301	oscp1a	98	64.957	Astyanax_mexicanus
ENSXETG00000027631	lsm10	98	71.074	ENSBTAG00000024096	LSM10	99	71.074	Bos_taurus
ENSXETG00000027631	lsm10	87	30.476	WBGene00010619	K07A1.15	83	30.476	Caenorhabditis_elegans
ENSXETG00000027631	lsm10	100	68.293	ENSCJAG00000044880	LSM10	100	68.293	Callithrix_jacchus
ENSXETG00000027631	lsm10	100	70.732	ENSCAFG00000003382	LSM10	100	70.732	Canis_familiaris
ENSXETG00000027631	lsm10	100	70.732	ENSCAFG00020008920	LSM10	100	70.732	Canis_lupus_dingo
ENSXETG00000027631	lsm10	98	71.074	ENSCHIG00000009398	LSM10	99	71.074	Capra_hircus
ENSXETG00000027631	lsm10	100	71.545	ENSCAPG00000012567	LSM10	100	71.545	Cavia_aperea
ENSXETG00000027631	lsm10	100	71.545	ENSCPOG00000039302	LSM10	100	71.545	Cavia_porcellus
ENSXETG00000027631	lsm10	95	68.696	ENSCCAG00000008378	-	93	68.696	Cebus_capucinus
ENSXETG00000027631	lsm10	100	69.106	ENSCCAG00000018913	-	100	69.106	Cebus_capucinus
ENSXETG00000027631	lsm10	100	69.106	ENSCATG00000006589	LSM10	100	69.106	Cercocebus_atys
ENSXETG00000027631	lsm10	100	71.545	ENSCLAG00000008633	LSM10	100	71.545	Chinchilla_lanigera
ENSXETG00000027631	lsm10	100	69.106	ENSCSAG00000000134	LSM10	100	69.106	Chlorocebus_sabaeus
ENSXETG00000027631	lsm10	100	68.800	ENSCHOG00000008615	LSM10	100	68.800	Choloepus_hoffmanni
ENSXETG00000027631	lsm10	81	30.612	ENSCSAVG00000001896	-	84	30.612	Ciona_savignyi
ENSXETG00000027631	lsm10	100	69.106	ENSCANG00000019928	LSM10	100	69.106	Colobus_angolensis_palliatus
ENSXETG00000027631	lsm10	93	59.829	ENSCGRG00001022673	-	94	59.829	Cricetulus_griseus_chok1gshd
ENSXETG00000027631	lsm10	98	69.421	ENSCGRG00001004317	-	99	69.421	Cricetulus_griseus_chok1gshd
ENSXETG00000027631	lsm10	93	59.829	ENSCGRG00000015514	-	94	59.829	Cricetulus_griseus_crigri
ENSXETG00000027631	lsm10	98	69.421	ENSCGRG00000014935	-	99	69.421	Cricetulus_griseus_crigri
ENSXETG00000027631	lsm10	96	56.780	ENSCSEG00000010374	oscp1a	79	56.780	Cynoglossus_semilaevis
ENSXETG00000027631	lsm10	96	60.345	ENSCVAG00000001536	oscp1a	89	60.345	Cyprinodon_variegatus
ENSXETG00000027631	lsm10	70	69.412	ENSDARG00000109563	CABZ01074453.1	99	69.412	Danio_rerio
ENSXETG00000027631	lsm10	98	67.500	ENSDARG00000101222	oscp1a	100	67.500	Danio_rerio
ENSXETG00000027631	lsm10	98	70.000	ENSDNOG00000036662	LSM10	98	70.000	Dasypus_novemcinctus
ENSXETG00000027631	lsm10	100	70.732	ENSDORG00000007579	Lsm10	100	70.732	Dipodomys_ordii
ENSXETG00000027631	lsm10	78	30.851	FBgn0033554	Lsm10	64	30.851	Drosophila_melanogaster
ENSXETG00000027631	lsm10	100	71.074	ENSETEG00000005703	LSM10	100	71.074	Echinops_telfairi
ENSXETG00000027631	lsm10	83	54.000	ENSEBUG00000001312	oscp1a	82	54.000	Eptatretus_burgeri
ENSXETG00000027631	lsm10	100	70.732	ENSEASG00005012194	LSM10	100	70.732	Equus_asinus_asinus
ENSXETG00000027631	lsm10	100	70.732	ENSECAG00000005071	LSM10	100	70.732	Equus_caballus
ENSXETG00000027631	lsm10	100	69.919	ENSEEUG00000012032	LSM10	100	69.919	Erinaceus_europaeus
ENSXETG00000027631	lsm10	98	61.983	ENSELUG00000007452	oscp1a	99	61.983	Esox_lucius
ENSXETG00000027631	lsm10	100	69.919	ENSFALG00000000851	LSM10	100	69.919	Ficedula_albicollis
ENSXETG00000027631	lsm10	100	71.545	ENSFDAG00000021056	LSM10	100	71.545	Fukomys_damarensis
ENSXETG00000027631	lsm10	89	63.964	ENSFHEG00000001058	oscp1a	96	63.964	Fundulus_heteroclitus
ENSXETG00000027631	lsm10	89	62.037	ENSGMOG00000019832	oscp1a	91	62.037	Gadus_morhua
ENSXETG00000027631	lsm10	100	70.732	ENSGALG00000002127	LSM10	100	70.732	Gallus_gallus
ENSXETG00000027631	lsm10	96	55.372	ENSGAFG00000016445	oscp1a	97	55.372	Gambusia_affinis
ENSXETG00000027631	lsm10	97	60.504	ENSGACG00000002329	oscp1a	98	60.504	Gasterosteus_aculeatus
ENSXETG00000027631	lsm10	100	69.919	ENSGAGG00000024848	LSM10	100	69.919	Gopherus_agassizii
ENSXETG00000027631	lsm10	100	69.106	ENSGGOG00000003556	LSM10	100	69.106	Gorilla_gorilla
ENSXETG00000027631	lsm10	96	64.407	ENSHBUG00000001722	oscp1a	96	64.407	Haplochromis_burtoni
ENSXETG00000027631	lsm10	100	69.106	ENSHGLG00000011625	LSM10	100	69.106	Heterocephalus_glaber_female
ENSXETG00000027631	lsm10	100	69.106	ENSHGLG00100001769	LSM10	100	69.106	Heterocephalus_glaber_male
ENSXETG00000027631	lsm10	87	66.667	ENSIPUG00000005808	oscp1a	91	66.667	Ictalurus_punctatus
ENSXETG00000027631	lsm10	100	70.732	ENSSTOG00000000606	LSM10	100	70.732	Ictidomys_tridecemlineatus
ENSXETG00000027631	lsm10	96	60.169	ENSKMAG00000012143	oscp1a	98	60.169	Kryptolebias_marmoratus
ENSXETG00000027631	lsm10	95	64.103	ENSLBEG00000017764	oscp1a	96	64.103	Labrus_bergylta
ENSXETG00000027631	lsm10	100	64.228	ENSLACG00000015904	LSM10	95	64.228	Latimeria_chalumnae
ENSXETG00000027631	lsm10	98	63.333	ENSLOCG00000018277	oscp1a	98	63.333	Lepisosteus_oculatus
ENSXETG00000027631	lsm10	100	70.248	ENSLAFG00000009600	LSM10	100	70.248	Loxodonta_africana
ENSXETG00000027631	lsm10	100	69.106	ENSMFAG00000009115	LSM10	100	69.106	Macaca_fascicularis
ENSXETG00000027631	lsm10	100	69.106	ENSMMUG00000017338	LSM10	100	69.106	Macaca_mulatta
ENSXETG00000027631	lsm10	100	69.106	ENSMNEG00000020023	LSM10	100	69.106	Macaca_nemestrina
ENSXETG00000027631	lsm10	100	69.106	ENSMLEG00000025150	LSM10	100	69.106	Mandrillus_leucophaeus
ENSXETG00000027631	lsm10	98	61.667	ENSMAMG00000004427	oscp1a	98	61.667	Mastacembelus_armatus
ENSXETG00000027631	lsm10	96	63.559	ENSMZEG00005026307	oscp1a	96	63.559	Maylandia_zebra
ENSXETG00000027631	lsm10	100	69.106	ENSMGAG00000015707	LSM10	100	69.106	Meleagris_gallopavo
ENSXETG00000027631	lsm10	98	67.769	ENSMAUG00000016624	Lsm10	99	67.769	Mesocricetus_auratus
ENSXETG00000027631	lsm10	98	69.421	ENSMOCG00000021943	Lsm10	99	69.421	Microtus_ochrogaster
ENSXETG00000027631	lsm10	93	64.348	ENSMMOG00000013597	oscp1a	86	64.348	Mola_mola
ENSXETG00000027631	lsm10	100	69.106	ENSMODG00000023328	LSM10	100	69.106	Monodelphis_domestica
ENSXETG00000027631	lsm10	52	65.079	ENSMALG00000012661	oscp1a	50	65.079	Monopterus_albus
ENSXETG00000027631	lsm10	99	69.672	MGP_CAROLIEiJ_G0026467	Lsm10	100	75.269	Mus_caroli
ENSXETG00000027631	lsm10	99	69.672	ENSMUSG00000050188	Lsm10	100	75.269	Mus_musculus
ENSXETG00000027631	lsm10	99	69.672	MGP_PahariEiJ_G0028798	Lsm10	100	75.269	Mus_pahari
ENSXETG00000027631	lsm10	99	69.672	MGP_SPRETEiJ_G0027446	Lsm10	100	75.269	Mus_spretus
ENSXETG00000027631	lsm10	100	70.732	ENSMPUG00000018593	LSM10	100	70.732	Mustela_putorius_furo
ENSXETG00000027631	lsm10	100	70.732	ENSMLUG00000023895	LSM10	100	70.732	Myotis_lucifugus
ENSXETG00000027631	lsm10	100	68.293	ENSNGAG00000015011	Lsm10	100	68.293	Nannospalax_galili
ENSXETG00000027631	lsm10	97	64.706	ENSNBRG00000014306	oscp1a	97	64.706	Neolamprologus_brichardi
ENSXETG00000027631	lsm10	100	70.732	ENSNLEG00000033754	LSM10	100	70.732	Nomascus_leucogenys
ENSXETG00000027631	lsm10	100	69.106	ENSMEUG00000006313	LSM10	100	69.106	Notamacropus_eugenii
ENSXETG00000027631	lsm10	100	69.106	ENSOPRG00000001699	LSM10	100	69.106	Ochotona_princeps
ENSXETG00000027631	lsm10	100	71.545	ENSODEG00000019161	LSM10	100	71.545	Octodon_degus
ENSXETG00000027631	lsm10	98	65.000	ENSONIG00000020904	oscp1a	98	65.000	Oreochromis_niloticus
ENSXETG00000027631	lsm10	100	68.293	ENSOANG00000002066	LSM10	100	68.293	Ornithorhynchus_anatinus
ENSXETG00000027631	lsm10	100	68.293	ENSOCUG00000005333	LSM10	100	68.293	Oryctolagus_cuniculus
ENSXETG00000027631	lsm10	97	62.185	ENSORLG00000009504	oscp1a	98	62.185	Oryzias_latipes
ENSXETG00000027631	lsm10	97	62.185	ENSORLG00020016201	oscp1a	98	62.185	Oryzias_latipes_hni
ENSXETG00000027631	lsm10	97	62.393	ENSORLG00015007794	oscp1a	98	62.393	Oryzias_latipes_hsok
ENSXETG00000027631	lsm10	100	71.545	ENSOGAG00000002653	LSM10	100	71.545	Otolemur_garnettii
ENSXETG00000027631	lsm10	98	71.074	ENSOARG00000009596	LSM10	99	71.074	Ovis_aries
ENSXETG00000027631	lsm10	100	69.919	ENSPPAG00000023465	LSM10	100	69.919	Pan_paniscus
ENSXETG00000027631	lsm10	100	70.732	ENSPPRG00000014619	LSM10	100	70.732	Panthera_pardus
ENSXETG00000027631	lsm10	100	70.732	ENSPTIG00000004613	LSM10	100	70.732	Panthera_tigris_altaica
ENSXETG00000027631	lsm10	100	69.919	ENSPTRG00000000539	LSM10	100	69.919	Pan_troglodytes
ENSXETG00000027631	lsm10	100	69.106	ENSPANG00000023172	LSM10	100	69.106	Papio_anubis
ENSXETG00000027631	lsm10	100	63.415	ENSPKIG00000003728	oscp1a	99	63.415	Paramormyrops_kingsleyae
ENSXETG00000027631	lsm10	100	69.106	ENSPSIG00000000590	LSM10	100	69.106	Pelodiscus_sinensis
ENSXETG00000027631	lsm10	64	64.935	ENSPMGG00000015718	oscp1a	100	64.935	Periophthalmus_magnuspinnatus
ENSXETG00000027631	lsm10	83	72.277	ENSPCIG00000014865	LSM10	74	72.277	Phascolarctos_cinereus
ENSXETG00000027631	lsm10	96	60.169	ENSPFOG00000020490	oscp1a	100	60.169	Poecilia_formosa
ENSXETG00000027631	lsm10	96	60.169	ENSPLAG00000016537	oscp1a	90	60.169	Poecilia_latipinna
ENSXETG00000027631	lsm10	89	61.818	ENSPMEG00000000174	oscp1a	96	61.818	Poecilia_mexicana
ENSXETG00000027631	lsm10	96	59.322	ENSPREG00000009899	oscp1a	90	59.322	Poecilia_reticulata
ENSXETG00000027631	lsm10	100	69.919	ENSPPYG00000001539	LSM10	100	69.919	Pongo_abelii
ENSXETG00000027631	lsm10	97	71.795	ENSPCAG00000002520	LSM10	98	71.795	Procavia_capensis
ENSXETG00000027631	lsm10	100	70.732	ENSPVAG00000008644	LSM10	100	70.732	Pteropus_vampyrus
ENSXETG00000027631	lsm10	96	64.407	ENSPNYG00000003138	oscp1a	96	64.407	Pundamilia_nyererei
ENSXETG00000027631	lsm10	95	62.931	ENSPNAG00000028829	oscp1a	97	62.931	Pygocentrus_nattereri
ENSXETG00000027631	lsm10	99	68.852	ENSRNOG00000025716	Lsm10	100	68.852	Rattus_norvegicus
ENSXETG00000027631	lsm10	100	69.106	ENSRBIG00000001561	LSM10	100	69.106	Rhinopithecus_bieti
ENSXETG00000027631	lsm10	100	69.106	ENSRROG00000011414	LSM10	100	69.106	Rhinopithecus_roxellana
ENSXETG00000027631	lsm10	100	69.106	ENSSBOG00000036413	-	100	69.106	Saimiri_boliviensis_boliviensis
ENSXETG00000027631	lsm10	100	69.919	ENSSHAG00000018056	LSM10	100	69.919	Sarcophilus_harrisii
ENSXETG00000027631	lsm10	99	68.033	ENSSFOG00015019954	lsm10	100	68.033	Scleropages_formosus
ENSXETG00000027631	lsm10	93	62.609	ENSSMAG00000001297	oscp1a	98	62.609	Scophthalmus_maximus
ENSXETG00000027631	lsm10	98	60.331	ENSSDUG00000007090	oscp1a	98	60.331	Seriola_dumerili
ENSXETG00000027631	lsm10	94	61.207	ENSSLDG00000000800	oscp1a	96	61.207	Seriola_lalandi_dorsalis
ENSXETG00000027631	lsm10	88	74.766	ENSSARG00000004211	LSM10	100	70.400	Sorex_araneus
ENSXETG00000027631	lsm10	94	62.931	ENSSPAG00000009229	oscp1a	96	62.931	Stegastes_partitus
ENSXETG00000027631	lsm10	100	70.248	ENSSSCG00000038916	LSM10	100	70.248	Sus_scrofa
ENSXETG00000027631	lsm10	98	68.595	ENSTGUG00000001600	-	99	68.595	Taeniopygia_guttata
ENSXETG00000027631	lsm10	98	69.421	ENSTGUG00000001602	-	99	69.421	Taeniopygia_guttata
ENSXETG00000027631	lsm10	98	61.983	ENSTRUG00000010531	oscp1a	98	61.983	Takifugu_rubripes
ENSXETG00000027631	lsm10	100	68.293	ENSTBEG00000016674	LSM10	100	68.293	Tupaia_belangeri
ENSXETG00000027631	lsm10	100	69.919	ENSUAMG00000020265	LSM10	100	69.919	Ursus_americanus
ENSXETG00000027631	lsm10	100	69.919	ENSUMAG00000001438	LSM10	57	69.919	Ursus_maritimus
ENSXETG00000027631	lsm10	100	70.732	ENSVVUG00000023209	LSM10	100	70.732	Vulpes_vulpes
ENSXETG00000027631	lsm10	98	58.678	ENSXCOG00000018776	oscp1a	76	58.678	Xiphophorus_couchianus
ENSXETG00000027631	lsm10	89	61.818	ENSXMAG00000019963	oscp1a	88	61.818	Xiphophorus_maculatus