EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXETG00000033103 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Xenopus_tropicalis
Status: putative
Strand: Minus strand
Length: 39307 bases
Position: chrGL172647.1:5510265-5549571
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXETP00000061111	Upf2	PF04050.14	5.2e-33	1	1
ENSXETP00000061111	MIF4G	PF02854.19	2.6e-79	1	3
ENSXETP00000061111	MIF4G	PF02854.19	2.6e-79	2	3
ENSXETP00000061111	MIF4G	PF02854.19	2.6e-79	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXETT00000065251	UPF2-201	4744	-	ENSXETP00000061111	1266 (aa)	-	F6URG2

Gene Model

Click here to download ENSXETG00000033103's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXETG00000033103's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXETG00000033103	UPF2	91	88.418	ENSG00000151461	UPF2	100	83.372	Homo_sapiens
ENSXETG00000033103	UPF2	91	79.432	ENSAPOG00000015837	UPF2	100	73.668	Acanthochromis_polyacanthus
ENSXETG00000033103	UPF2	100	81.102	ENSAMEG00000004586	UPF2	100	82.398	Ailuropoda_melanoleuca
ENSXETG00000033103	UPF2	91	84.569	ENSACIG00000018078	UPF2	100	79.813	Amphilophus_citrinellus
ENSXETG00000033103	UPF2	91	84.596	ENSAOCG00000016766	UPF2	100	78.907	Amphiprion_ocellaris
ENSXETG00000033103	UPF2	91	84.596	ENSAPEG00000019084	UPF2	100	78.907	Amphiprion_percula
ENSXETG00000033103	UPF2	91	84.079	ENSATEG00000021677	UPF2	99	79.549	Anabas_testudineus
ENSXETG00000033103	UPF2	100	82.081	ENSAPLG00000010287	UPF2	100	82.003	Anas_platyrhynchos
ENSXETG00000033103	UPF2	91	88.764	ENSACAG00000009259	UPF2	100	83.934	Anolis_carolinensis
ENSXETG00000033103	UPF2	91	83.073	ENSANAG00000028451	UPF2	99	77.639	Aotus_nancymaae
ENSXETG00000033103	UPF2	91	84.523	ENSACLG00000012696	UPF2	100	79.922	Astatotilapia_calliptera
ENSXETG00000033103	UPF2	91	83.983	ENSAMXG00000013700	UPF2	99	78.315	Astyanax_mexicanus
ENSXETG00000033103	UPF2	100	81.193	ENSBTAG00000000288	UPF2	100	82.782	Bos_taurus
ENSXETG00000033103	UPF2	91	88.927	ENSCJAG00000020685	UPF2	100	84.483	Callithrix_jacchus
ENSXETG00000033103	UPF2	100	81.255	ENSCAFG00000004839	UPF2	100	82.552	Canis_familiaris
ENSXETG00000033103	UPF2	94	92.614	ENSCAFG00020005882	UPF2	100	82.812	Canis_lupus_dingo
ENSXETG00000033103	UPF2	100	81.193	ENSCHIG00000020359	UPF2	100	82.782	Capra_hircus
ENSXETG00000033103	UPF2	91	88.245	ENSTSYG00000000935	UPF2	98	88.360	Carlito_syrichta
ENSXETG00000033103	UPF2	91	77.816	ENSCAPG00000016658	UPF2	94	77.749	Cavia_aperea
ENSXETG00000033103	UPF2	99	80.499	ENSCPOG00000008809	UPF2	99	80.904	Cavia_porcellus
ENSXETG00000033103	UPF2	99	78.103	ENSCCAG00000035991	UPF2	99	78.180	Cebus_capucinus
ENSXETG00000033103	UPF2	91	89.014	ENSCATG00000032679	UPF2	100	83.450	Cercocebus_atys
ENSXETG00000033103	UPF2	100	81.317	ENSCLAG00000011434	UPF2	100	82.538	Chinchilla_lanigera
ENSXETG00000033103	UPF2	91	89.014	ENSCSAG00000013372	UPF2	100	83.450	Chlorocebus_sabaeus
ENSXETG00000033103	UPF2	81	93.512	ENSCHOG00000000422	UPF2	82	93.512	Choloepus_hoffmanni
ENSXETG00000033103	UPF2	99	82.508	ENSCPBG00000027823	UPF2	100	85.106	Chrysemys_picta_bellii
ENSXETG00000033103	UPF2	79	49.753	ENSCSAVG00000007772	-	99	49.604	Ciona_savignyi
ENSXETG00000033103	UPF2	91	85.628	ENSCANG00000040396	UPF2	100	80.078	Colobus_angolensis_palliatus
ENSXETG00000033103	UPF2	91	89.100	ENSCGRG00001019347	Upf2	100	83.398	Cricetulus_griseus_chok1gshd
ENSXETG00000033103	UPF2	91	89.100	ENSCGRG00000017993	Upf2	100	83.398	Cricetulus_griseus_crigri
ENSXETG00000033103	UPF2	70	84.607	ENSCSEG00000003520	UPF2	98	74.822	Cynoglossus_semilaevis
ENSXETG00000033103	UPF2	91	83.477	ENSCVAG00000006167	UPF2	93	84.954	Cyprinodon_variegatus
ENSXETG00000033103	UPF2	100	81.193	ENSDNOG00000018160	UPF2	100	82.552	Dasypus_novemcinctus
ENSXETG00000033103	UPF2	100	81.484	ENSDORG00000002478	Upf2	100	82.385	Dipodomys_ordii
ENSXETG00000033103	UPF2	90	36.490	FBgn0029992	Upf2	90	40.000	Drosophila_melanogaster
ENSXETG00000033103	UPF2	66	97.059	ENSETEG00000011583	-	67	97.059	Echinops_telfairi
ENSXETG00000033103	UPF2	65	74.497	ENSEBUG00000012448	-	89	74.497	Eptatretus_burgeri
ENSXETG00000033103	UPF2	100	81.025	ENSEASG00005019274	UPF2	100	81.714	Equus_asinus_asinus
ENSXETG00000033103	UPF2	100	80.887	ENSECAG00000017022	UPF2	100	82.462	Equus_caballus
ENSXETG00000033103	UPF2	71	89.888	ENSEEUG00000007819	UPF2	82	76.730	Erinaceus_europaeus
ENSXETG00000033103	UPF2	99	75.304	ENSELUG00000012014	UPF2	100	77.838	Esox_lucius
ENSXETG00000033103	UPF2	91	89.023	ENSFCAG00000005785	UPF2	100	83.333	Felis_catus
ENSXETG00000033103	UPF2	91	89.533	ENSFALG00000001889	UPF2	98	84.778	Ficedula_albicollis
ENSXETG00000033103	UPF2	100	81.547	ENSFDAG00000014348	UPF2	100	83.424	Fukomys_damarensis
ENSXETG00000033103	UPF2	91	84.038	ENSFHEG00000009826	UPF2	99	80.445	Fundulus_heteroclitus
ENSXETG00000033103	UPF2	91	79.795	ENSGMOG00000005557	UPF2	100	75.307	Gadus_morhua
ENSXETG00000033103	UPF2	91	89.455	ENSGALG00000033772	UPF2	100	84.730	Gallus_gallus
ENSXETG00000033103	UPF2	91	83.549	ENSGAFG00000020867	UPF2	100	79.283	Gambusia_affinis
ENSXETG00000033103	UPF2	91	82.014	ENSGACG00000001080	UPF2	100	76.575	Gasterosteus_aculeatus
ENSXETG00000033103	UPF2	91	88.678	ENSGAGG00000002700	UPF2	100	84.091	Gopherus_agassizii
ENSXETG00000033103	UPF2	91	88.908	ENSGGOG00000001479	UPF2	100	83.372	Gorilla_gorilla
ENSXETG00000033103	UPF2	91	84.496	ENSHBUG00000004249	UPF2	100	79.891	Haplochromis_burtoni
ENSXETG00000033103	UPF2	91	78.701	ENSHGLG00000003822	-	99	74.571	Heterocephalus_glaber_female
ENSXETG00000033103	UPF2	80	81.404	ENSHGLG00000015176	-	100	82.521	Heterocephalus_glaber_female
ENSXETG00000033103	UPF2	68	91.465	ENSHGLG00100010036	UPF2	100	81.075	Heterocephalus_glaber_male
ENSXETG00000033103	UPF2	91	83.290	ENSHCOG00000004025	UPF2	99	77.994	Hippocampus_comes
ENSXETG00000033103	UPF2	91	82.759	ENSIPUG00000015524	UPF2	100	77.743	Ictalurus_punctatus
ENSXETG00000033103	UPF2	100	81.637	ENSSTOG00000013075	UPF2	100	82.538	Ictidomys_tridecemlineatus
ENSXETG00000033103	UPF2	91	88.754	ENSJJAG00000004913	Upf2	100	83.137	Jaculus_jaculus
ENSXETG00000033103	UPF2	91	83.935	ENSKMAG00000001071	UPF2	100	79.640	Kryptolebias_marmoratus
ENSXETG00000033103	UPF2	91	83.863	ENSLBEG00000016394	-	99	78.401	Labrus_bergylta
ENSXETG00000033103	UPF2	70	85.475	ENSLBEG00000000728	-	93	78.122	Labrus_bergylta
ENSXETG00000033103	UPF2	91	80.911	ENSLACG00000015945	UPF2	100	76.209	Latimeria_chalumnae
ENSXETG00000033103	UPF2	91	86.454	ENSLOCG00000015698	UPF2	100	82.205	Lepisosteus_oculatus
ENSXETG00000033103	UPF2	99	82.115	ENSMFAG00000043865	UPF2	100	83.683	Macaca_fascicularis
ENSXETG00000033103	UPF2	91	89.014	ENSMMUG00000008241	UPF2	100	83.450	Macaca_mulatta
ENSXETG00000033103	UPF2	71	91.823	ENSMNEG00000008062	UPF2	100	84.027	Macaca_nemestrina
ENSXETG00000033103	UPF2	91	88.908	ENSMLEG00000036120	UPF2	100	84.964	Mandrillus_leucophaeus
ENSXETG00000033103	UPF2	91	84.192	ENSMAMG00000018276	UPF2	100	78.846	Mastacembelus_armatus
ENSXETG00000033103	UPF2	91	84.523	ENSMZEG00005021595	UPF2	100	79.922	Maylandia_zebra
ENSXETG00000033103	UPF2	91	89.053	ENSMGAG00000004573	UPF2	99	84.422	Meleagris_gallopavo
ENSXETG00000033103	UPF2	91	86.592	ENSMAUG00000016512	Upf2	100	81.216	Mesocricetus_auratus
ENSXETG00000033103	UPF2	93	92.045	ENSMICG00000001716	UPF2	100	79.276	Microcebus_murinus
ENSXETG00000033103	UPF2	100	82.508	ENSMOCG00000008263	Upf2	100	82.740	Microtus_ochrogaster
ENSXETG00000033103	UPF2	99	81.478	ENSMMOG00000006528	UPF2	100	74.770	Mola_mola
ENSXETG00000033103	UPF2	91	89.360	ENSMODG00000016794	UPF2	100	84.953	Monodelphis_domestica
ENSXETG00000033103	UPF2	91	83.348	ENSMALG00000002663	UPF2	100	78.164	Monopterus_albus
ENSXETG00000033103	UPF2	91	88.581	MGP_CAROLIEiJ_G0023157	Upf2	99	89.111	Mus_caroli
ENSXETG00000033103	UPF2	91	88.927	ENSMUSG00000043241	Upf2	99	87.713	Mus_musculus
ENSXETG00000033103	UPF2	91	88.841	MGP_PahariEiJ_G0019217	Upf2	100	87.524	Mus_pahari
ENSXETG00000033103	UPF2	91	89.187	MGP_SPRETEiJ_G0024075	Upf2	100	87.713	Mus_spretus
ENSXETG00000033103	UPF2	100	81.846	ENSMPUG00000001064	UPF2	100	82.629	Mustela_putorius_furo
ENSXETG00000033103	UPF2	99	81.481	ENSMLUG00000000228	UPF2	100	82.022	Myotis_lucifugus
ENSXETG00000033103	UPF2	91	84.523	ENSNBRG00000013629	UPF2	100	79.922	Neolamprologus_brichardi
ENSXETG00000033103	UPF2	91	89.014	ENSNLEG00000012058	UPF2	100	83.450	Nomascus_leucogenys
ENSXETG00000033103	UPF2	52	100.000	ENSMEUG00000002180	-	55	100.000	Notamacropus_eugenii
ENSXETG00000033103	UPF2	77	97.887	ENSOPRG00000006801	-	78	97.887	Ochotona_princeps
ENSXETG00000033103	UPF2	100	80.934	ENSODEG00000001290	UPF2	100	82.308	Octodon_degus
ENSXETG00000033103	UPF2	91	84.609	ENSONIG00000017991	UPF2	100	79.567	Oreochromis_niloticus
ENSXETG00000033103	UPF2	99	84.053	ENSOCUG00000006230	UPF2	100	84.694	Oryctolagus_cuniculus
ENSXETG00000033103	UPF2	91	84.052	ENSORLG00000017189	UPF2	100	79.267	Oryzias_latipes
ENSXETG00000033103	UPF2	91	84.138	ENSORLG00020005969	UPF2	100	79.345	Oryzias_latipes_hni
ENSXETG00000033103	UPF2	91	84.052	ENSORLG00015005713	UPF2	100	79.267	Oryzias_latipes_hsok
ENSXETG00000033103	UPF2	91	80.086	ENSOMEG00000023420	UPF2	98	76.269	Oryzias_melastigma
ENSXETG00000033103	UPF2	91	88.495	ENSOGAG00000005796	UPF2	100	82.970	Otolemur_garnettii
ENSXETG00000033103	UPF2	100	81.069	ENSOARG00000014587	UPF2	100	82.655	Ovis_aries
ENSXETG00000033103	UPF2	91	88.042	ENSPPAG00000037953	UPF2	100	82.399	Pan_paniscus
ENSXETG00000033103	UPF2	91	89.023	ENSPPRG00000000690	UPF2	100	83.333	Panthera_pardus
ENSXETG00000033103	UPF2	91	89.023	ENSPTIG00000008867	UPF2	100	83.333	Panthera_tigris_altaica
ENSXETG00000033103	UPF2	91	88.908	ENSPTRG00000002291	UPF2	100	83.372	Pan_troglodytes
ENSXETG00000033103	UPF2	91	89.014	ENSPANG00000023399	UPF2	100	83.450	Papio_anubis
ENSXETG00000033103	UPF2	91	82.358	ENSPKIG00000025502	UPF2	100	79.875	Paramormyrops_kingsleyae
ENSXETG00000033103	UPF2	50	90.852	ENSPSIG00000015158	UPF2	95	82.166	Pelodiscus_sinensis
ENSXETG00000033103	UPF2	91	81.239	ENSPMGG00000005259	UPF2	100	77.312	Periophthalmus_magnuspinnatus
ENSXETG00000033103	UPF2	93	73.063	ENSPEMG00000015731	Upf2	99	73.389	Peromyscus_maniculatus_bairdii
ENSXETG00000033103	UPF2	91	89.187	ENSPCIG00000006656	UPF2	100	84.718	Phascolarctos_cinereus
ENSXETG00000033103	UPF2	91	83.721	ENSPFOG00000017118	UPF2	100	79.439	Poecilia_formosa
ENSXETG00000033103	UPF2	91	83.721	ENSPLAG00000005094	UPF2	100	79.439	Poecilia_latipinna
ENSXETG00000033103	UPF2	91	83.721	ENSPMEG00000017009	UPF2	100	79.517	Poecilia_mexicana
ENSXETG00000033103	UPF2	91	83.405	ENSPREG00000021880	UPF2	100	79.219	Poecilia_reticulata
ENSXETG00000033103	UPF2	66	87.500	ENSPPYG00000002089	-	100	88.109	Pongo_abelii
ENSXETG00000033103	UPF2	86	78.519	ENSPCAG00000000684	UPF2	90	79.159	Procavia_capensis
ENSXETG00000033103	UPF2	94	92.000	ENSPCOG00000021656	UPF2	100	82.293	Propithecus_coquereli
ENSXETG00000033103	UPF2	100	74.408	ENSPVAG00000017286	UPF2	100	76.498	Pteropus_vampyrus
ENSXETG00000033103	UPF2	91	81.740	ENSPNYG00000017096	UPF2	100	77.397	Pundamilia_nyererei
ENSXETG00000033103	UPF2	91	84.065	ENSPNAG00000009357	UPF2	100	78.804	Pygocentrus_nattereri
ENSXETG00000033103	UPF2	91	84.509	ENSRNOG00000023593	Upf2	100	98.889	Rattus_norvegicus
ENSXETG00000033103	UPF2	91	88.215	ENSRBIG00000037780	UPF2	100	83.726	Rhinopithecus_bieti
ENSXETG00000033103	UPF2	91	89.187	ENSRROG00000043547	UPF2	100	83.359	Rhinopithecus_roxellana
ENSXETG00000033103	UPF2	94	92.571	ENSSBOG00000020012	UPF2	100	84.314	Saimiri_boliviensis_boliviensis
ENSXETG00000033103	UPF2	100	78.274	ENSSFOG00015023788	upf2	100	80.375	Scleropages_formosus
ENSXETG00000033103	UPF2	99	75.115	ENSSMAG00000007637	UPF2	100	76.012	Scophthalmus_maximus
ENSXETG00000033103	UPF2	91	84.728	ENSSDUG00000017244	UPF2	99	78.907	Seriola_dumerili
ENSXETG00000033103	UPF2	91	82.109	ENSSLDG00000016866	UPF2	100	76.448	Seriola_lalandi_dorsalis
ENSXETG00000033103	UPF2	100	80.352	ENSSARG00000008615	UPF2	100	81.015	Sorex_araneus
ENSXETG00000033103	UPF2	91	86.073	ENSSPUG00000014544	UPF2	99	81.484	Sphenodon_punctatus
ENSXETG00000033103	UPF2	69	87.041	ENSSSCG00000011117	-	99	87.629	Sus_scrofa
ENSXETG00000033103	UPF2	91	89.245	ENSTGUG00000002163	-	100	84.664	Taeniopygia_guttata
ENSXETG00000033103	UPF2	91	83.448	ENSTRUG00000007519	UPF2	99	78.311	Takifugu_rubripes
ENSXETG00000033103	UPF2	100	78.555	ENSTNIG00000004453	UPF2	100	78.705	Tetraodon_nigroviridis
ENSXETG00000033103	UPF2	93	75.042	ENSTBEG00000012679	UPF2	93	75.374	Tupaia_belangeri
ENSXETG00000033103	UPF2	100	80.872	ENSTTRG00000016388	UPF2	100	82.385	Tursiops_truncatus
ENSXETG00000033103	UPF2	87	98.876	ENSUAMG00000023560	UPF2	99	98.876	Ursus_americanus
ENSXETG00000033103	UPF2	100	81.193	ENSUMAG00000012953	UPF2	95	82.552	Ursus_maritimus
ENSXETG00000033103	UPF2	83	96.774	ENSVPAG00000006763	UPF2	86	96.774	Vicugna_pacos
ENSXETG00000033103	UPF2	100	81.255	ENSVVUG00000006166	UPF2	100	82.552	Vulpes_vulpes
ENSXETG00000033103	UPF2	91	83.247	ENSXCOG00000011604	UPF2	100	79.407	Xiphophorus_couchianus
ENSXETG00000033103	UPF2	91	83.635	ENSXMAG00000017209	UPF2	100	79.361	Xiphophorus_maculatus