EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000000022 (Gene tree)
Gene ID: 102222957
Gene Symbol: ddb1
Alias: zgc:63840
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 47294 bases
Position: chr4:6250573-6297866
Accession: 102222957
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000000022	CPSF_A	PF03178.15	1.2e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000000022	-	6682	XM_005805537	ENSXMAP00000000022	1081 (aa)	XP_005805594	M3ZCT0

Gene Model

Click here to download ENSXMAG00000000022's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03420	Nucleotide excision repair	KEGG
xma04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000000022's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000000022	ddb1	99	91.146	ENSG00000167986	DDB1	100	96.575	Homo_sapiens
ENSXMAG00000000022	ddb1	99	98.136	ENSAPOG00000005036	ddb1	99	98.265	Acanthochromis_polyacanthus
ENSXMAG00000000022	ddb1	99	91.240	ENSAMEG00000016518	DDB1	94	91.240	Ailuropoda_melanoleuca
ENSXMAG00000000022	ddb1	91	98.367	ENSACIG00000020624	ddb1	99	98.367	Amphilophus_citrinellus
ENSXMAG00000000022	ddb1	99	98.043	ENSAOCG00000003066	ddb1	94	98.043	Amphiprion_ocellaris
ENSXMAG00000000022	ddb1	99	98.140	ENSAPEG00000000092	ddb1	99	98.140	Amphiprion_percula
ENSXMAG00000000022	ddb1	99	98.603	ENSATEG00000020571	ddb1	97	98.603	Anabas_testudineus
ENSXMAG00000000022	ddb1	98	89.896	ENSAPLG00000007174	DDB1	93	89.896	Anas_platyrhynchos
ENSXMAG00000000022	ddb1	99	90.308	ENSACAG00000017758	DDB1	94	90.308	Anolis_carolinensis
ENSXMAG00000000022	ddb1	99	91.146	ENSANAG00000021878	DDB1	94	91.146	Aotus_nancymaae
ENSXMAG00000000022	ddb1	99	97.950	ENSACLG00000012401	ddb1	99	97.539	Astatotilapia_calliptera
ENSXMAG00000000022	ddb1	57	30.464	ENSAMXG00000008485	cpsf1	52	30.464	Astyanax_mexicanus
ENSXMAG00000000022	ddb1	99	91.146	ENSBTAG00000021569	DDB1	88	91.146	Bos_taurus
ENSXMAG00000000022	ddb1	99	37.296	WBGene00010890	ddb-1	94	37.296	Caenorhabditis_elegans
ENSXMAG00000000022	ddb1	99	91.146	ENSCJAG00000019319	DDB1	94	91.146	Callithrix_jacchus
ENSXMAG00000000022	ddb1	99	91.434	ENSCAFG00000016264	DDB1	99	91.434	Canis_familiaris
ENSXMAG00000000022	ddb1	99	91.434	ENSCAFG00020012722	DDB1	99	91.434	Canis_lupus_dingo
ENSXMAG00000000022	ddb1	99	91.146	ENSCHIG00000014969	DDB1	94	91.146	Capra_hircus
ENSXMAG00000000022	ddb1	99	90.774	ENSTSYG00000008027	DDB1	94	90.774	Carlito_syrichta
ENSXMAG00000000022	ddb1	97	90.970	ENSCAPG00000010786	DDB1	94	90.970	Cavia_aperea
ENSXMAG00000000022	ddb1	99	90.960	ENSCPOG00000009956	DDB1	94	90.960	Cavia_porcellus
ENSXMAG00000000022	ddb1	99	91.146	ENSCCAG00000035883	DDB1	94	91.146	Cebus_capucinus
ENSXMAG00000000022	ddb1	99	89.177	ENSCATG00000044495	DDB1	94	89.177	Cercocebus_atys
ENSXMAG00000000022	ddb1	99	91.053	ENSCLAG00000004126	DDB1	94	91.053	Chinchilla_lanigera
ENSXMAG00000000022	ddb1	99	91.146	ENSCSAG00000006392	DDB1	94	91.146	Chlorocebus_sabaeus
ENSXMAG00000000022	ddb1	89	83.811	ENSCHOG00000011377	DDB1	86	83.811	Choloepus_hoffmanni
ENSXMAG00000000022	ddb1	99	90.680	ENSCPBG00000017728	DDB1	94	90.680	Chrysemys_picta_bellii
ENSXMAG00000000022	ddb1	99	61.460	ENSCING00000007437	-	94	61.460	Ciona_intestinalis
ENSXMAG00000000022	ddb1	93	60.707	ENSCSAVG00000004783	-	100	60.404	Ciona_savignyi
ENSXMAG00000000022	ddb1	99	91.146	ENSCANG00000019948	DDB1	94	91.146	Colobus_angolensis_palliatus
ENSXMAG00000000022	ddb1	99	91.240	ENSCGRG00001016599	Ddb1	98	90.299	Cricetulus_griseus_chok1gshd
ENSXMAG00000000022	ddb1	99	91.240	ENSCGRG00000013427	Ddb1	94	91.240	Cricetulus_griseus_crigri
ENSXMAG00000000022	ddb1	98	97.644	ENSCSEG00000012499	ddb1	99	95.951	Cynoglossus_semilaevis
ENSXMAG00000000022	ddb1	99	98.517	ENSCVAG00000019531	ddb1	99	98.517	Cyprinodon_variegatus
ENSXMAG00000000022	ddb1	99	91.884	ENSDARG00000074431	ddb1	94	91.884	Danio_rerio
ENSXMAG00000000022	ddb1	99	91.434	ENSDNOG00000014884	DDB1	97	91.434	Dasypus_novemcinctus
ENSXMAG00000000022	ddb1	82	95.455	ENSDORG00000000127	Ddb1	93	95.455	Dipodomys_ordii
ENSXMAG00000000022	ddb1	99	60.946	FBgn0260962	pic	94	60.946	Drosophila_melanogaster
ENSXMAG00000000022	ddb1	68	95.276	ENSETEG00000001053	-	64	95.276	Echinops_telfairi
ENSXMAG00000000022	ddb1	82	84.252	ENSEBUG00000014593	ddb1	97	84.252	Eptatretus_burgeri
ENSXMAG00000000022	ddb1	99	91.240	ENSEASG00005008184	DDB1	94	91.240	Equus_asinus_asinus
ENSXMAG00000000022	ddb1	99	91.240	ENSECAG00000012136	DDB1	94	91.240	Equus_caballus
ENSXMAG00000000022	ddb1	90	86.700	ENSEEUG00000003194	DDB1	85	86.700	Erinaceus_europaeus
ENSXMAG00000000022	ddb1	99	96.552	ENSELUG00000023868	ddb1	94	96.552	Esox_lucius
ENSXMAG00000000022	ddb1	99	91.240	ENSFCAG00000029716	DDB1	94	91.240	Felis_catus
ENSXMAG00000000022	ddb1	99	90.353	ENSFALG00000011981	DDB1	94	90.353	Ficedula_albicollis
ENSXMAG00000000022	ddb1	99	91.053	ENSFDAG00000005128	DDB1	94	91.053	Fukomys_damarensis
ENSXMAG00000000022	ddb1	89	98.913	ENSFHEG00000022133	ddb1	93	98.913	Fundulus_heteroclitus
ENSXMAG00000000022	ddb1	83	98.328	ENSGMOG00000019386	ddb1	94	98.328	Gadus_morhua
ENSXMAG00000000022	ddb1	99	90.587	ENSGALG00000042333	DDB1	94	90.587	Gallus_gallus
ENSXMAG00000000022	ddb1	100	99.815	ENSGAFG00000013142	ddb1	100	99.815	Gambusia_affinis
ENSXMAG00000000022	ddb1	99	97.944	ENSGACG00000017182	ddb1	98	97.944	Gasterosteus_aculeatus
ENSXMAG00000000022	ddb1	94	90.462	ENSGAGG00000014124	DDB1	94	90.462	Gopherus_agassizii
ENSXMAG00000000022	ddb1	99	91.146	ENSGGOG00000004052	DDB1	94	91.146	Gorilla_gorilla
ENSXMAG00000000022	ddb1	99	97.950	ENSHBUG00000008873	ddb1	94	97.950	Haplochromis_burtoni
ENSXMAG00000000022	ddb1	99	91.053	ENSHGLG00000018430	DDB1	94	91.053	Heterocephalus_glaber_female
ENSXMAG00000000022	ddb1	99	90.028	ENSHGLG00100014475	DDB1	94	90.028	Heterocephalus_glaber_male
ENSXMAG00000000022	ddb1	99	97.679	ENSHCOG00000018670	ddb1	99	97.679	Hippocampus_comes
ENSXMAG00000000022	ddb1	99	95.181	ENSIPUG00000005612	DDB1	98	95.181	Ictalurus_punctatus
ENSXMAG00000000022	ddb1	99	91.146	ENSSTOG00000007552	DDB1	94	91.146	Ictidomys_tridecemlineatus
ENSXMAG00000000022	ddb1	99	91.146	ENSJJAG00000017769	Ddb1	94	91.146	Jaculus_jaculus
ENSXMAG00000000022	ddb1	99	98.605	ENSKMAG00000002315	ddb1	100	98.605	Kryptolebias_marmoratus
ENSXMAG00000000022	ddb1	89	98.439	ENSLBEG00000017065	ddb1	99	98.439	Labrus_bergylta
ENSXMAG00000000022	ddb1	99	90.698	ENSLACG00000017611	DDB1	97	90.702	Latimeria_chalumnae
ENSXMAG00000000022	ddb1	91	87.093	ENSLOCG00000000012	ddb1	94	87.093	Lepisosteus_oculatus
ENSXMAG00000000022	ddb1	99	91.053	ENSLAFG00000011513	DDB1	94	91.053	Loxodonta_africana
ENSXMAG00000000022	ddb1	99	91.146	ENSMFAG00000042035	DDB1	94	91.146	Macaca_fascicularis
ENSXMAG00000000022	ddb1	99	91.146	ENSMMUG00000002691	DDB1	100	90.789	Macaca_mulatta
ENSXMAG00000000022	ddb1	57	30.065	ENSMMUG00000007380	CPSF1	56	30.065	Macaca_mulatta
ENSXMAG00000000022	ddb1	99	91.146	ENSMNEG00000031559	DDB1	94	91.146	Macaca_nemestrina
ENSXMAG00000000022	ddb1	99	91.146	ENSMLEG00000044136	DDB1	98	89.779	Mandrillus_leucophaeus
ENSXMAG00000000022	ddb1	99	98.509	ENSMAMG00000014372	ddb1	94	98.509	Mastacembelus_armatus
ENSXMAG00000000022	ddb1	99	97.856	ENSMZEG00005013835	ddb1	94	97.856	Maylandia_zebra
ENSXMAG00000000022	ddb1	93	90.239	ENSMGAG00000004990	DDB1	93	90.239	Meleagris_gallopavo
ENSXMAG00000000022	ddb1	99	91.240	ENSMAUG00000012926	Ddb1	94	91.240	Mesocricetus_auratus
ENSXMAG00000000022	ddb1	99	91.333	ENSMICG00000013703	DDB1	94	91.333	Microcebus_murinus
ENSXMAG00000000022	ddb1	99	91.146	ENSMOCG00000020499	Ddb1	94	91.146	Microtus_ochrogaster
ENSXMAG00000000022	ddb1	91	98.673	ENSMMOG00000001758	ddb1	99	98.673	Mola_mola
ENSXMAG00000000022	ddb1	99	82.947	ENSMODG00000020353	DDB1	93	82.947	Monodelphis_domestica
ENSXMAG00000000022	ddb1	99	98.322	ENSMALG00000014071	ddb1	94	98.322	Monopterus_albus
ENSXMAG00000000022	ddb1	99	91.240	MGP_CAROLIEiJ_G0022695	Ddb1	94	91.240	Mus_caroli
ENSXMAG00000000022	ddb1	99	91.333	ENSMUSG00000024740	Ddb1	94	91.333	Mus_musculus
ENSXMAG00000000022	ddb1	99	91.240	MGP_PahariEiJ_G0014189	Ddb1	94	91.240	Mus_pahari
ENSXMAG00000000022	ddb1	99	91.333	MGP_SPRETEiJ_G0023609	Ddb1	94	91.333	Mus_spretus
ENSXMAG00000000022	ddb1	99	88.071	ENSMPUG00000014200	DDB1	94	88.071	Mustela_putorius_furo
ENSXMAG00000000022	ddb1	99	91.333	ENSMLUG00000013232	DDB1	94	91.333	Myotis_lucifugus
ENSXMAG00000000022	ddb1	99	91.146	ENSNGAG00000009384	Ddb1	94	91.146	Nannospalax_galili
ENSXMAG00000000022	ddb1	99	98.043	ENSNBRG00000019581	ddb1	94	98.043	Neolamprologus_brichardi
ENSXMAG00000000022	ddb1	99	88.622	ENSNLEG00000002022	DDB1	94	88.622	Nomascus_leucogenys
ENSXMAG00000000022	ddb1	89	95.853	ENSMEUG00000001099	DDB1	87	95.853	Notamacropus_eugenii
ENSXMAG00000000022	ddb1	89	81.950	ENSOPRG00000008254	DDB1	85	81.950	Ochotona_princeps
ENSXMAG00000000022	ddb1	99	91.146	ENSODEG00000002419	DDB1	94	91.146	Octodon_degus
ENSXMAG00000000022	ddb1	99	98.043	ENSONIG00000005804	ddb1	94	98.043	Oreochromis_niloticus
ENSXMAG00000000022	ddb1	89	90.570	ENSOANG00000004897	DDB1	94	90.570	Ornithorhynchus_anatinus
ENSXMAG00000000022	ddb1	99	91.240	ENSOCUG00000001667	DDB1	94	91.240	Oryctolagus_cuniculus
ENSXMAG00000000022	ddb1	99	97.495	ENSORLG00000001399	ddb1	98	97.695	Oryzias_latipes
ENSXMAG00000000022	ddb1	99	97.403	ENSORLG00020001277	ddb1	96	97.403	Oryzias_latipes_hni
ENSXMAG00000000022	ddb1	99	97.495	ENSORLG00015002080	ddb1	99	97.495	Oryzias_latipes_hsok
ENSXMAG00000000022	ddb1	99	97.860	ENSOMEG00000006181	ddb1	97	97.860	Oryzias_melastigma
ENSXMAG00000000022	ddb1	99	91.333	ENSOGAG00000016103	DDB1	94	91.333	Otolemur_garnettii
ENSXMAG00000000022	ddb1	99	91.146	ENSOARG00000011716	DDB1	93	91.146	Ovis_aries
ENSXMAG00000000022	ddb1	99	91.146	ENSPPAG00000035343	DDB1	94	91.146	Pan_paniscus
ENSXMAG00000000022	ddb1	99	91.240	ENSPPRG00000013300	DDB1	94	91.240	Panthera_pardus
ENSXMAG00000000022	ddb1	97	91.255	ENSPTIG00000006909	DDB1	92	91.255	Panthera_tigris_altaica
ENSXMAG00000000022	ddb1	99	91.146	ENSPTRG00000003737	DDB1	94	91.146	Pan_troglodytes
ENSXMAG00000000022	ddb1	99	91.146	ENSPANG00000000242	DDB1	94	91.146	Papio_anubis
ENSXMAG00000000022	ddb1	99	95.628	ENSPKIG00000019213	ddb1	94	95.628	Paramormyrops_kingsleyae
ENSXMAG00000000022	ddb1	98	90.066	ENSPSIG00000013275	DDB1	94	90.066	Pelodiscus_sinensis
ENSXMAG00000000022	ddb1	91	98.265	ENSPMGG00000021179	ddb1	99	98.265	Periophthalmus_magnuspinnatus
ENSXMAG00000000022	ddb1	99	91.240	ENSPEMG00000012241	Ddb1	94	91.240	Peromyscus_maniculatus_bairdii
ENSXMAG00000000022	ddb1	94	86.837	ENSPMAG00000008479	ddb1	100	86.837	Petromyzon_marinus
ENSXMAG00000000022	ddb1	99	91.240	ENSPCIG00000002643	DDB1	94	91.240	Phascolarctos_cinereus
ENSXMAG00000000022	ddb1	99	99.813	ENSPFOG00000002768	ddb1	94	99.813	Poecilia_formosa
ENSXMAG00000000022	ddb1	99	99.814	ENSPLAG00000017227	ddb1	98	99.814	Poecilia_latipinna
ENSXMAG00000000022	ddb1	99	99.814	ENSPMEG00000011398	ddb1	98	99.814	Poecilia_mexicana
ENSXMAG00000000022	ddb1	99	99.814	ENSPREG00000004440	ddb1	97	99.814	Poecilia_reticulata
ENSXMAG00000000022	ddb1	99	87.453	ENSPPYG00000003193	DDB1	93	87.453	Pongo_abelii
ENSXMAG00000000022	ddb1	83	88.723	ENSPCAG00000011040	DDB1	79	88.723	Procavia_capensis
ENSXMAG00000000022	ddb1	99	90.884	ENSPCOG00000015176	DDB1	94	90.884	Propithecus_coquereli
ENSXMAG00000000022	ddb1	99	91.053	ENSPVAG00000003847	DDB1	94	91.053	Pteropus_vampyrus
ENSXMAG00000000022	ddb1	99	96.097	ENSPNAG00000006635	ddb1	97	96.097	Pygocentrus_nattereri
ENSXMAG00000000022	ddb1	99	91.333	ENSRNOG00000020715	Ddb1	94	91.333	Rattus_norvegicus
ENSXMAG00000000022	ddb1	57	30.065	ENSRBIG00000044907	CPSF1	56	30.065	Rhinopithecus_bieti
ENSXMAG00000000022	ddb1	99	91.146	ENSRBIG00000033611	DDB1	95	91.146	Rhinopithecus_bieti
ENSXMAG00000000022	ddb1	99	91.146	ENSRROG00000041407	DDB1	94	91.146	Rhinopithecus_roxellana
ENSXMAG00000000022	ddb1	57	30.065	ENSRROG00000044861	CPSF1	56	30.065	Rhinopithecus_roxellana
ENSXMAG00000000022	ddb1	99	91.240	ENSSBOG00000019775	DDB1	94	91.240	Saimiri_boliviensis_boliviensis
ENSXMAG00000000022	ddb1	93	88.734	ENSSHAG00000011600	DDB1	94	88.734	Sarcophilus_harrisii
ENSXMAG00000000022	ddb1	99	95.733	ENSSFOG00015011151	ddb1	97	95.733	Scleropages_formosus
ENSXMAG00000000022	ddb1	99	97.950	ENSSMAG00000009495	ddb1	94	97.950	Scophthalmus_maximus
ENSXMAG00000000022	ddb1	99	98.509	ENSSDUG00000004642	ddb1	94	98.509	Seriola_dumerili
ENSXMAG00000000022	ddb1	99	98.509	ENSSLDG00000015804	ddb1	94	98.509	Seriola_lalandi_dorsalis
ENSXMAG00000000022	ddb1	72	94.340	ENSSARG00000003290	-	71	94.340	Sorex_araneus
ENSXMAG00000000022	ddb1	99	90.587	ENSSPUG00000019338	DDB1	94	90.587	Sphenodon_punctatus
ENSXMAG00000000022	ddb1	99	98.510	ENSSPAG00000009888	ddb1	99	98.510	Stegastes_partitus
ENSXMAG00000000022	ddb1	99	90.833	ENSSSCG00000013094	DDB1	94	90.833	Sus_scrofa
ENSXMAG00000000022	ddb1	99	90.807	ENSTGUG00000006414	DDB1	94	90.807	Taeniopygia_guttata
ENSXMAG00000000022	ddb1	99	96.849	ENSTRUG00000016682	ddb1	99	96.849	Takifugu_rubripes
ENSXMAG00000000022	ddb1	86	91.551	ENSTNIG00000009565	ddb1	93	91.551	Tetraodon_nigroviridis
ENSXMAG00000000022	ddb1	91	84.835	ENSTTRG00000011055	DDB1	88	84.835	Tursiops_truncatus
ENSXMAG00000000022	ddb1	99	91.434	ENSUAMG00000017793	DDB1	93	91.434	Ursus_americanus
ENSXMAG00000000022	ddb1	99	91.434	ENSUMAG00000011788	DDB1	98	91.434	Ursus_maritimus
ENSXMAG00000000022	ddb1	89	86.349	ENSVPAG00000007963	DDB1	86	86.349	Vicugna_pacos
ENSXMAG00000000022	ddb1	99	91.240	ENSVVUG00000004987	DDB1	94	91.240	Vulpes_vulpes
ENSXMAG00000000022	ddb1	99	88.301	ENSXETG00000008820	ddb1	94	88.301	Xenopus_tropicalis
ENSXMAG00000000022	ddb1	91	100.000	ENSXCOG00000013956	ddb1	99	100.000	Xiphophorus_couchianus