EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000000217 (Gene tree)
Gene ID: 102232309
Gene Symbol: raver1
Alias: zgc:112236
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 10411 bases
Position: chr16:9249641-9260051
Accession: 102232309
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000000217	RRM_1	PF00076.22	1.4e-29	1	2
ENSXMAP00000000217	RRM_1	PF00076.22	1.4e-29	2	2
ENSXMAP00000040227	RRM_1	PF00076.22	1.4e-29	1	2
ENSXMAP00000040227	RRM_1	PF00076.22	1.4e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000027216	-	4303	XM_023348467	ENSXMAP00000040227	735 (aa)	XP_023204235	-
ENSXMAT00000000218	-	4198	XM_014472510	ENSXMAP00000000217	734 (aa)	XP_014327996	M3ZDC5

Gene Model

Click here to download ENSXMAG00000000217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000000217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000000217	raver1	94	50.606	ENSG00000161847	RAVER1	99	51.007	Homo_sapiens
ENSXMAG00000000217	raver1	98	83.032	ENSAPOG00000017267	raver1	92	82.650	Acanthochromis_polyacanthus
ENSXMAG00000000217	raver1	94	47.958	ENSAMEG00000011738	RAVER1	97	49.077	Ailuropoda_melanoleuca
ENSXMAG00000000217	raver1	98	83.983	ENSAOCG00000005128	raver1	97	83.584	Amphiprion_ocellaris
ENSXMAG00000000217	raver1	98	83.956	ENSAPEG00000010854	raver1	100	83.560	Amphiprion_percula
ENSXMAG00000000217	raver1	98	81.328	ENSATEG00000021004	raver1	100	80.978	Anabas_testudineus
ENSXMAG00000000217	raver1	79	49.196	ENSACAG00000008386	-	91	48.976	Anolis_carolinensis
ENSXMAG00000000217	raver1	80	59.302	ENSANAG00000028226	RAVER1	97	50.665	Aotus_nancymaae
ENSXMAG00000000217	raver1	100	80.868	ENSACLG00000018492	raver1	95	80.868	Astatotilapia_calliptera
ENSXMAG00000000217	raver1	97	65.984	ENSAMXG00000005132	raver1	100	64.628	Astyanax_mexicanus
ENSXMAG00000000217	raver1	94	51.329	ENSBTAG00000015721	RAVER1	99	52.329	Bos_taurus
ENSXMAG00000000217	raver1	80	59.332	ENSCJAG00000005671	RAVER1	97	50.602	Callithrix_jacchus
ENSXMAG00000000217	raver1	94	50.831	ENSCAFG00000017861	RAVER1	97	52.427	Canis_familiaris
ENSXMAG00000000217	raver1	94	50.831	ENSCAFG00020024449	RAVER1	99	52.427	Canis_lupus_dingo
ENSXMAG00000000217	raver1	69	65.394	ENSCHIG00000006718	RAVER1	99	50.267	Capra_hircus
ENSXMAG00000000217	raver1	61	68.595	ENSTSYG00000027107	RAVER1	72	68.508	Carlito_syrichta
ENSXMAG00000000217	raver1	60	67.714	ENSCAPG00000002269	RAVER1	100	50.363	Cavia_aperea
ENSXMAG00000000217	raver1	66	59.674	ENSCPOG00000001008	RAVER1	99	50.467	Cavia_porcellus
ENSXMAG00000000217	raver1	80	59.528	ENSCATG00000043863	RAVER1	97	50.872	Cercocebus_atys
ENSXMAG00000000217	raver1	78	60.041	ENSCLAG00000009336	RAVER1	99	50.337	Chinchilla_lanigera
ENSXMAG00000000217	raver1	93	51.150	ENSCSAG00000007317	RAVER1	82	51.827	Chlorocebus_sabaeus
ENSXMAG00000000217	raver1	92	50.665	ENSCPBG00000005349	-	97	50.665	Chrysemys_picta_bellii
ENSXMAG00000000217	raver1	80	59.528	ENSCANG00000008337	RAVER1	97	50.200	Colobus_angolensis_palliatus
ENSXMAG00000000217	raver1	78	60.606	ENSCGRG00001013260	-	99	51.070	Cricetulus_griseus_chok1gshd
ENSXMAG00000000217	raver1	78	60.606	ENSCGRG00000015138	-	99	51.070	Cricetulus_griseus_crigri
ENSXMAG00000000217	raver1	98	73.728	ENSCSEG00000021092	raver1	100	73.378	Cynoglossus_semilaevis
ENSXMAG00000000217	raver1	100	86.531	ENSCVAG00000013971	raver1	100	86.531	Cyprinodon_variegatus
ENSXMAG00000000217	raver1	98	67.265	ENSDARG00000052617	raver1	100	65.583	Danio_rerio
ENSXMAG00000000217	raver1	57	61.890	ENSDNOG00000035742	-	58	59.770	Dasypus_novemcinctus
ENSXMAG00000000217	raver1	65	53.200	ENSDORG00000010106	-	96	47.131	Dipodomys_ordii
ENSXMAG00000000217	raver1	53	65.995	ENSEASG00005010544	-	72	65.909	Equus_asinus_asinus
ENSXMAG00000000217	raver1	69	65.155	ENSECAG00000024966	RAVER1	97	49.539	Equus_caballus
ENSXMAG00000000217	raver1	98	72.690	ENSELUG00000023287	raver1	100	72.358	Esox_lucius
ENSXMAG00000000217	raver1	68	66.344	ENSFCAG00000009435	RAVER1	95	50.267	Felis_catus
ENSXMAG00000000217	raver1	93	69.958	ENSGMOG00000003649	raver1	98	69.958	Gadus_morhua
ENSXMAG00000000217	raver1	64	38.302	ENSGALG00000050608	-	52	37.247	Gallus_gallus
ENSXMAG00000000217	raver1	100	96.185	ENSGAFG00000015944	raver1	100	96.185	Gambusia_affinis
ENSXMAG00000000217	raver1	94	71.973	ENSGACG00000013818	raver1	100	71.583	Gasterosteus_aculeatus
ENSXMAG00000000217	raver1	80	66.935	ENSGAGG00000011748	-	99	65.722	Gopherus_agassizii
ENSXMAG00000000217	raver1	94	50.471	ENSGGOG00000006015	RAVER1	97	51.141	Gorilla_gorilla
ENSXMAG00000000217	raver1	99	80.738	ENSHBUG00000021210	raver1	100	75.034	Haplochromis_burtoni
ENSXMAG00000000217	raver1	77	59.875	ENSHGLG00000015460	RAVER1	98	51.503	Heterocephalus_glaber_female
ENSXMAG00000000217	raver1	77	59.875	ENSHGLG00100000812	RAVER1	98	51.503	Heterocephalus_glaber_male
ENSXMAG00000000217	raver1	100	71.854	ENSHCOG00000000449	raver1	98	73.171	Hippocampus_comes
ENSXMAG00000000217	raver1	98	66.713	ENSIPUG00000013153	raver1	100	67.300	Ictalurus_punctatus
ENSXMAG00000000217	raver1	93	49.932	ENSSTOG00000003241	RAVER1	98	51.150	Ictidomys_tridecemlineatus
ENSXMAG00000000217	raver1	94	50.066	ENSJJAG00000018219	-	99	50.601	Jaculus_jaculus
ENSXMAG00000000217	raver1	100	79.348	ENSKMAG00000017355	raver1	100	79.348	Kryptolebias_marmoratus
ENSXMAG00000000217	raver1	93	80.470	ENSLBEG00000008268	raver1	96	80.470	Labrus_bergylta
ENSXMAG00000000217	raver1	85	48.498	ENSLACG00000005809	-	99	49.356	Latimeria_chalumnae
ENSXMAG00000000217	raver1	98	60.078	ENSLOCG00000007500	raver1	100	60.102	Lepisosteus_oculatus
ENSXMAG00000000217	raver1	84	58.153	ENSLAFG00000003664	-	95	60.000	Loxodonta_africana
ENSXMAG00000000217	raver1	93	51.286	ENSMFAG00000037977	RAVER1	95	51.556	Macaca_fascicularis
ENSXMAG00000000217	raver1	79	60.239	ENSMMUG00000014897	RAVER1	95	51.286	Macaca_mulatta
ENSXMAG00000000217	raver1	79	60.239	ENSMNEG00000028390	RAVER1	95	51.286	Macaca_nemestrina
ENSXMAG00000000217	raver1	94	48.803	ENSMLEG00000041959	RAVER1	97	51.007	Mandrillus_leucophaeus
ENSXMAG00000000217	raver1	98	81.189	ENSMAMG00000012059	raver1	100	80.707	Mastacembelus_armatus
ENSXMAG00000000217	raver1	100	80.868	ENSMZEG00005019002	raver1	100	80.868	Maylandia_zebra
ENSXMAG00000000217	raver1	94	51.329	ENSMICG00000010326	RAVER1	99	52.661	Microcebus_murinus
ENSXMAG00000000217	raver1	98	81.051	ENSMMOG00000012093	raver1	100	80.571	Mola_mola
ENSXMAG00000000217	raver1	90	50.000	ENSMODG00000005584	-	88	51.009	Monodelphis_domestica
ENSXMAG00000000217	raver1	100	78.697	ENSMALG00000016569	raver1	100	78.697	Monopterus_albus
ENSXMAG00000000217	raver1	80	61.616	MGP_CAROLIEiJ_G0031860	-	99	51.061	Mus_caroli
ENSXMAG00000000217	raver1	78	60.606	MGP_SPRETEiJ_G0032984	-	99	50.265	Mus_spretus
ENSXMAG00000000217	raver1	91	50.136	ENSMPUG00000006712	RAVER1	96	51.078	Mustela_putorius_furo
ENSXMAG00000000217	raver1	68	65.942	ENSMLUG00000012328	RAVER1	99	52.180	Myotis_lucifugus
ENSXMAG00000000217	raver1	78	58.586	ENSNGAG00000001260	-	99	49.730	Nannospalax_galili
ENSXMAG00000000217	raver1	100	72.592	ENSNBRG00000010139	raver1	100	72.049	Neolamprologus_brichardi
ENSXMAG00000000217	raver1	80	59.136	ENSNLEG00000012181	RAVER1	97	51.275	Nomascus_leucogenys
ENSXMAG00000000217	raver1	75	59.410	ENSMEUG00000003281	-	84	59.410	Notamacropus_eugenii
ENSXMAG00000000217	raver1	53	67.008	ENSODEG00000016260	RAVER1	99	49.332	Octodon_degus
ENSXMAG00000000217	raver1	92	79.063	ENSONIG00000001559	raver1	100	79.063	Oreochromis_niloticus
ENSXMAG00000000217	raver1	94	50.474	ENSOCUG00000020918	RAVER1	99	50.137	Oryctolagus_cuniculus
ENSXMAG00000000217	raver1	100	77.989	ENSORLG00000005458	raver1	100	77.989	Oryzias_latipes
ENSXMAG00000000217	raver1	100	78.397	ENSORLG00020004392	raver1	100	78.397	Oryzias_latipes_hni
ENSXMAG00000000217	raver1	100	78.668	ENSORLG00015017222	raver1	100	78.668	Oryzias_latipes_hsok
ENSXMAG00000000217	raver1	94	77.649	ENSOMEG00000023956	raver1	100	76.688	Oryzias_melastigma
ENSXMAG00000000217	raver1	94	50.475	ENSOGAG00000011071	RAVER1	97	51.009	Otolemur_garnettii
ENSXMAG00000000217	raver1	63	78.846	ENSOARG00000015886	RAVER1	97	47.861	Ovis_aries
ENSXMAG00000000217	raver1	94	50.606	ENSPPAG00000002611	RAVER1	97	51.007	Pan_paniscus
ENSXMAG00000000217	raver1	93	49.529	ENSPPRG00000009912	RAVER1	95	50.539	Panthera_pardus
ENSXMAG00000000217	raver1	94	50.606	ENSPTRG00000010466	RAVER1	97	51.007	Pan_troglodytes
ENSXMAG00000000217	raver1	80	59.528	ENSPANG00000004122	RAVER1	97	51.007	Papio_anubis
ENSXMAG00000000217	raver1	94	51.972	ENSPCIG00000018695	-	99	52.841	Phascolarctos_cinereus
ENSXMAG00000000217	raver1	100	92.091	ENSPFOG00000007016	raver1	100	91.957	Poecilia_formosa
ENSXMAG00000000217	raver1	95	92.120	ENSPLAG00000020793	raver1	99	92.120	Poecilia_latipinna
ENSXMAG00000000217	raver1	100	93.741	ENSPMEG00000011220	raver1	100	93.741	Poecilia_mexicana
ENSXMAG00000000217	raver1	100	87.347	ENSPREG00000006864	raver1	100	87.347	Poecilia_reticulata
ENSXMAG00000000217	raver1	80	60.433	ENSPPYG00000010514	RAVER1	83	52.291	Pongo_abelii
ENSXMAG00000000217	raver1	94	50.470	ENSPCOG00000026605	RAVER1	97	50.197	Propithecus_coquereli
ENSXMAG00000000217	raver1	60	78.846	ENSPVAG00000003689	RAVER1	99	51.150	Pteropus_vampyrus
ENSXMAG00000000217	raver1	100	76.327	ENSPNYG00000013284	raver1	100	75.918	Pundamilia_nyererei
ENSXMAG00000000217	raver1	98	68.213	ENSPNAG00000015476	raver1	100	67.292	Pygocentrus_nattereri
ENSXMAG00000000217	raver1	91	50.272	ENSRNOG00000020710	Raver1	99	51.531	Rattus_norvegicus
ENSXMAG00000000217	raver1	94	51.560	ENSRBIG00000034702	RAVER1	97	52.407	Rhinopithecus_bieti
ENSXMAG00000000217	raver1	94	52.072	ENSRROG00000031186	RAVER1	97	52.355	Rhinopithecus_roxellana
ENSXMAG00000000217	raver1	94	51.429	ENSSBOG00000023423	RAVER1	97	52.138	Saimiri_boliviensis_boliviensis
ENSXMAG00000000217	raver1	85	51.524	ENSSHAG00000008181	-	90	52.527	Sarcophilus_harrisii
ENSXMAG00000000217	raver1	98	82.873	ENSSMAG00000004546	raver1	100	82.361	Scophthalmus_maximus
ENSXMAG00000000217	raver1	98	84.647	ENSSDUG00000021063	raver1	100	84.103	Seriola_dumerili
ENSXMAG00000000217	raver1	98	84.647	ENSSLDG00000014505	raver1	100	84.103	Seriola_lalandi_dorsalis
ENSXMAG00000000217	raver1	98	84.924	ENSSPAG00000000688	raver1	100	84.511	Stegastes_partitus
ENSXMAG00000000217	raver1	94	50.542	ENSSSCG00000013650	-	99	52.000	Sus_scrofa
ENSXMAG00000000217	raver1	98	75.829	ENSTRUG00000025641	raver1	100	75.441	Takifugu_rubripes
ENSXMAG00000000217	raver1	94	49.932	ENSTTRG00000009552	RAVER1	99	50.267	Tursiops_truncatus
ENSXMAG00000000217	raver1	94	49.200	ENSUAMG00000020385	RAVER1	97	50.334	Ursus_americanus
ENSXMAG00000000217	raver1	94	50.831	ENSVVUG00000028976	RAVER1	97	52.427	Vulpes_vulpes
ENSXMAG00000000217	raver1	90	50.644	ENSXETG00000011622	raver1	94	50.644	Xenopus_tropicalis
ENSXMAG00000000217	raver1	100	99.728	ENSXCOG00000016368	raver1	100	99.728	Xiphophorus_couchianus