EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000000242 (Gene tree)
Gene ID: 102222739
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 16818 bases
Position: chr15:5070524-5087341
Accession: 102222739
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000000259	XRN_N	PF03159.18	5.1e-102	1	1
ENSXMAP00000033387	XRN_N	PF03159.18	1.6e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000000261	-	4523	XM_023347449	ENSXMAP00000000259	967 (aa)	XP_023203217	M3ZDG7
ENSXMAT00000041250	-	1302	-	ENSXMAP00000033387	433 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000000242's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000000242's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000000242	xrn2	92	78.589	ENSG00000088930	XRN2	100	68.551	Homo_sapiens
ENSXMAG00000000242	xrn2	96	86.417	ENSAPOG00000009818	xrn2	100	84.560	Acanthochromis_polyacanthus
ENSXMAG00000000242	xrn2	92	79.075	ENSAMEG00000012581	XRN2	100	68.243	Ailuropoda_melanoleuca
ENSXMAG00000000242	xrn2	92	85.437	ENSACIG00000015047	xrn2	95	88.145	Amphilophus_citrinellus
ENSXMAG00000000242	xrn2	96	86.952	ENSAOCG00000023632	xrn2	100	85.072	Amphiprion_ocellaris
ENSXMAG00000000242	xrn2	96	87.059	ENSAPEG00000014871	xrn2	100	85.378	Amphiprion_percula
ENSXMAG00000000242	xrn2	96	85.668	ENSATEG00000001273	xrn2	99	84.639	Anabas_testudineus
ENSXMAG00000000242	xrn2	87	79.328	ENSAPLG00000013869	XRN2	100	68.326	Anas_platyrhynchos
ENSXMAG00000000242	xrn2	99	69.490	ENSACAG00000005565	XRN2	100	69.057	Anolis_carolinensis
ENSXMAG00000000242	xrn2	92	78.832	ENSANAG00000020126	XRN2	100	68.345	Aotus_nancymaae
ENSXMAG00000000242	xrn2	92	84.915	ENSACLG00000010522	xrn2	98	85.616	Astatotilapia_calliptera
ENSXMAG00000000242	xrn2	92	86.375	ENSAMXG00000018301	xrn2	100	78.323	Astyanax_mexicanus
ENSXMAG00000000242	xrn2	92	79.319	ENSBTAG00000011304	XRN2	100	68.140	Bos_taurus
ENSXMAG00000000242	xrn2	93	61.353	WBGene00006964	xrn-2	87	53.801	Caenorhabditis_elegans
ENSXMAG00000000242	xrn2	92	78.832	ENSCJAG00000005611	XRN2	100	68.243	Callithrix_jacchus
ENSXMAG00000000242	xrn2	92	79.075	ENSCAFG00000005185	XRN2	100	68.448	Canis_familiaris
ENSXMAG00000000242	xrn2	92	79.075	ENSCAFG00020027479	XRN2	100	68.448	Canis_lupus_dingo
ENSXMAG00000000242	xrn2	92	78.589	ENSCHIG00000006921	XRN2	100	68.243	Capra_hircus
ENSXMAG00000000242	xrn2	92	79.075	ENSTSYG00000008315	XRN2	100	68.551	Carlito_syrichta
ENSXMAG00000000242	xrn2	97	59.263	ENSCAPG00000010773	XRN2	99	58.228	Cavia_aperea
ENSXMAG00000000242	xrn2	92	79.075	ENSCPOG00000009407	XRN2	100	68.962	Cavia_porcellus
ENSXMAG00000000242	xrn2	92	78.589	ENSCATG00000040350	XRN2	100	68.551	Cercocebus_atys
ENSXMAG00000000242	xrn2	92	79.319	ENSCLAG00000013419	XRN2	100	68.756	Chinchilla_lanigera
ENSXMAG00000000242	xrn2	92	78.589	ENSCSAG00000011094	XRN2	100	68.551	Chlorocebus_sabaeus
ENSXMAG00000000242	xrn2	60	87.097	ENSCHOG00000013404	XRN2	63	87.097	Choloepus_hoffmanni
ENSXMAG00000000242	xrn2	92	79.805	ENSCPBG00000023533	XRN2	100	69.538	Chrysemys_picta_bellii
ENSXMAG00000000242	xrn2	94	68.095	ENSCING00000022336	-	100	60.237	Ciona_intestinalis
ENSXMAG00000000242	xrn2	95	67.294	ENSCSAVG00000011217	-	91	71.325	Ciona_savignyi
ENSXMAG00000000242	xrn2	92	78.589	ENSCANG00000040240	XRN2	100	68.551	Colobus_angolensis_palliatus
ENSXMAG00000000242	xrn2	92	79.562	ENSCGRG00001010676	Xrn2	99	70.288	Cricetulus_griseus_chok1gshd
ENSXMAG00000000242	xrn2	97	68.671	ENSCGRG00000006378	Xrn2	99	68.114	Cricetulus_griseus_crigri
ENSXMAG00000000242	xrn2	92	79.319	ENSCSEG00000005628	xrn2	100	79.231	Cynoglossus_semilaevis
ENSXMAG00000000242	xrn2	92	89.538	ENSCVAG00000018999	xrn2	98	94.264	Cyprinodon_variegatus
ENSXMAG00000000242	xrn2	92	86.375	ENSDARG00000101900	xrn2	96	85.277	Danio_rerio
ENSXMAG00000000242	xrn2	92	78.832	ENSDNOG00000001895	XRN2	100	68.551	Dasypus_novemcinctus
ENSXMAG00000000242	xrn2	92	79.075	ENSDORG00000005434	Xrn2	100	67.520	Dipodomys_ordii
ENSXMAG00000000242	xrn2	93	66.190	FBgn0031868	Rat1	92	53.539	Drosophila_melanogaster
ENSXMAG00000000242	xrn2	92	74.272	ENSETEG00000001740	XRN2	93	79.075	Echinops_telfairi
ENSXMAG00000000242	xrn2	94	75.952	ENSEBUG00000016136	xrn2	100	68.894	Eptatretus_burgeri
ENSXMAG00000000242	xrn2	92	79.075	ENSEASG00005002484	XRN2	100	68.891	Equus_asinus_asinus
ENSXMAG00000000242	xrn2	94	92.308	ENSECAG00000018988	XRN2	96	92.308	Equus_caballus
ENSXMAG00000000242	xrn2	66	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSXMAG00000000242	xrn2	92	85.888	ENSELUG00000000552	xrn2	100	77.688	Esox_lucius
ENSXMAG00000000242	xrn2	92	79.075	ENSFCAG00000007970	XRN2	100	68.140	Felis_catus
ENSXMAG00000000242	xrn2	92	80.292	ENSFALG00000004508	XRN2	100	68.955	Ficedula_albicollis
ENSXMAG00000000242	xrn2	92	79.075	ENSFDAG00000016311	XRN2	100	68.654	Fukomys_damarensis
ENSXMAG00000000242	xrn2	92	85.714	ENSFHEG00000013039	xrn2	98	86.015	Fundulus_heteroclitus
ENSXMAG00000000242	xrn2	92	85.158	ENSGMOG00000013436	xrn2	100	79.808	Gadus_morhua
ENSXMAG00000000242	xrn2	92	80.535	ENSGALG00000008372	XRN2	100	68.595	Gallus_gallus
ENSXMAG00000000242	xrn2	100	96.305	ENSGAFG00000014284	xrn2	99	98.733	Gambusia_affinis
ENSXMAG00000000242	xrn2	92	86.618	ENSGACG00000011870	xrn2	96	86.948	Gasterosteus_aculeatus
ENSXMAG00000000242	xrn2	92	79.562	ENSGAGG00000004884	XRN2	100	69.128	Gopherus_agassizii
ENSXMAG00000000242	xrn2	92	78.589	ENSGGOG00000013738	XRN2	100	68.551	Gorilla_gorilla
ENSXMAG00000000242	xrn2	92	84.915	ENSHBUG00000005077	xrn2	94	87.548	Haplochromis_burtoni
ENSXMAG00000000242	xrn2	95	77.541	ENSHGLG00000014831	XRN2	100	67.729	Heterocephalus_glaber_female
ENSXMAG00000000242	xrn2	95	77.541	ENSHGLG00100013130	XRN2	100	67.729	Heterocephalus_glaber_male
ENSXMAG00000000242	xrn2	94	86.698	ENSHCOG00000011994	xrn2	99	80.285	Hippocampus_comes
ENSXMAG00000000242	xrn2	92	87.591	ENSIPUG00000006639	xrn2	100	77.393	Ictalurus_punctatus
ENSXMAG00000000242	xrn2	92	78.832	ENSSTOG00000000589	XRN2	100	68.654	Ictidomys_tridecemlineatus
ENSXMAG00000000242	xrn2	92	79.562	ENSJJAG00000022128	Xrn2	100	69.040	Jaculus_jaculus
ENSXMAG00000000242	xrn2	92	87.591	ENSLBEG00000010041	xrn2	100	88.484	Labrus_bergylta
ENSXMAG00000000242	xrn2	88	78.571	ENSLACG00000008307	XRN2	98	75.031	Latimeria_chalumnae
ENSXMAG00000000242	xrn2	92	86.375	ENSLOCG00000016874	xrn2	93	80.101	Lepisosteus_oculatus
ENSXMAG00000000242	xrn2	92	79.075	ENSLAFG00000014624	XRN2	100	68.654	Loxodonta_africana
ENSXMAG00000000242	xrn2	92	78.589	ENSMFAG00000038122	XRN2	100	68.551	Macaca_fascicularis
ENSXMAG00000000242	xrn2	92	78.589	ENSMMUG00000011405	XRN2	100	68.551	Macaca_mulatta
ENSXMAG00000000242	xrn2	92	78.589	ENSMNEG00000040626	XRN2	100	68.448	Macaca_nemestrina
ENSXMAG00000000242	xrn2	92	78.589	ENSMLEG00000041897	XRN2	100	68.448	Mandrillus_leucophaeus
ENSXMAG00000000242	xrn2	92	89.781	ENSMAMG00000008633	xrn2	99	84.953	Mastacembelus_armatus
ENSXMAG00000000242	xrn2	92	88.808	ENSMZEG00005022362	xrn2	98	87.572	Maylandia_zebra
ENSXMAG00000000242	xrn2	92	79.277	ENSMGAG00000003196	XRN2	90	73.081	Meleagris_gallopavo
ENSXMAG00000000242	xrn2	92	79.075	ENSMAUG00000021842	Xrn2	100	69.199	Mesocricetus_auratus
ENSXMAG00000000242	xrn2	92	79.319	ENSMICG00000008126	XRN2	100	68.345	Microcebus_murinus
ENSXMAG00000000242	xrn2	92	79.075	ENSMOCG00000012588	Xrn2	100	69.143	Microtus_ochrogaster
ENSXMAG00000000242	xrn2	92	88.321	ENSMMOG00000017576	xrn2	96	86.260	Mola_mola
ENSXMAG00000000242	xrn2	92	80.292	ENSMODG00000006163	XRN2	100	69.247	Monodelphis_domestica
ENSXMAG00000000242	xrn2	92	88.321	ENSMALG00000011355	xrn2	95	91.747	Monopterus_albus
ENSXMAG00000000242	xrn2	92	79.319	MGP_CAROLIEiJ_G0024400	Xrn2	100	68.410	Mus_caroli
ENSXMAG00000000242	xrn2	92	79.319	ENSMUSG00000027433	Xrn2	100	68.583	Mus_musculus
ENSXMAG00000000242	xrn2	92	79.319	MGP_PahariEiJ_G0025843	Xrn2	100	68.480	Mus_pahari
ENSXMAG00000000242	xrn2	92	79.319	MGP_SPRETEiJ_G0025318	Xrn2	94	84.034	Mus_spretus
ENSXMAG00000000242	xrn2	92	79.075	ENSMPUG00000001198	XRN2	93	67.273	Mustela_putorius_furo
ENSXMAG00000000242	xrn2	92	78.832	ENSMLUG00000001536	XRN2	100	68.210	Myotis_lucifugus
ENSXMAG00000000242	xrn2	92	79.319	ENSNGAG00000018138	Xrn2	100	68.834	Nannospalax_galili
ENSXMAG00000000242	xrn2	92	88.808	ENSNBRG00000008062	xrn2	98	87.802	Neolamprologus_brichardi
ENSXMAG00000000242	xrn2	92	78.589	ENSNLEG00000009991	XRN2	100	68.551	Nomascus_leucogenys
ENSXMAG00000000242	xrn2	65	82.222	ENSMEUG00000008622	-	53	82.222	Notamacropus_eugenii
ENSXMAG00000000242	xrn2	75	72.105	ENSOPRG00000001397	-	63	72.105	Ochotona_princeps
ENSXMAG00000000242	xrn2	88	73.913	ENSODEG00000000860	-	98	63.607	Octodon_degus
ENSXMAG00000000242	xrn2	92	79.075	ENSODEG00000010745	-	100	68.551	Octodon_degus
ENSXMAG00000000242	xrn2	99	82.794	ENSONIG00000018720	xrn2	100	82.275	Oreochromis_niloticus
ENSXMAG00000000242	xrn2	92	79.805	ENSOANG00000015673	XRN2	100	69.396	Ornithorhynchus_anatinus
ENSXMAG00000000242	xrn2	92	79.075	ENSOCUG00000013468	XRN2	100	68.859	Oryctolagus_cuniculus
ENSXMAG00000000242	xrn2	92	89.538	ENSORLG00000017213	xrn2	97	86.536	Oryzias_latipes
ENSXMAG00000000242	xrn2	92	89.538	ENSORLG00020001824	xrn2	100	82.275	Oryzias_latipes_hni
ENSXMAG00000000242	xrn2	92	89.294	ENSORLG00015019747	xrn2	100	82.070	Oryzias_latipes_hsok
ENSXMAG00000000242	xrn2	92	89.051	ENSOMEG00000019820	xrn2	100	81.288	Oryzias_melastigma
ENSXMAG00000000242	xrn2	92	79.319	ENSOGAG00000001068	XRN2	100	68.545	Otolemur_garnettii
ENSXMAG00000000242	xrn2	97	68.321	ENSOARG00000004443	XRN2	99	67.476	Ovis_aries
ENSXMAG00000000242	xrn2	92	78.589	ENSPPAG00000033549	XRN2	100	68.551	Pan_paniscus
ENSXMAG00000000242	xrn2	92	79.075	ENSPPRG00000008732	XRN2	100	68.140	Panthera_pardus
ENSXMAG00000000242	xrn2	97	68.321	ENSPTIG00000015683	XRN2	97	67.476	Panthera_tigris_altaica
ENSXMAG00000000242	xrn2	92	78.589	ENSPTRG00000013308	XRN2	100	68.551	Pan_troglodytes
ENSXMAG00000000242	xrn2	92	78.589	ENSPANG00000018088	XRN2	100	68.551	Papio_anubis
ENSXMAG00000000242	xrn2	92	84.672	ENSPKIG00000016889	xrn2	100	76.181	Paramormyrops_kingsleyae
ENSXMAG00000000242	xrn2	80	78.431	ENSPSIG00000014666	XRN2	100	75.707	Pelodiscus_sinensis
ENSXMAG00000000242	xrn2	92	79.319	ENSPEMG00000000111	Xrn2	100	68.731	Peromyscus_maniculatus_bairdii
ENSXMAG00000000242	xrn2	60	74.074	ENSPMAG00000002576	xrn2	99	72.941	Petromyzon_marinus
ENSXMAG00000000242	xrn2	100	97.415	ENSPFOG00000004182	xrn2	100	97.415	Poecilia_formosa
ENSXMAG00000000242	xrn2	92	96.396	ENSPLAG00000007351	xrn2	99	96.396	Poecilia_latipinna
ENSXMAG00000000242	xrn2	94	97.043	ENSPMEG00000011798	xrn2	100	97.043	Poecilia_mexicana
ENSXMAG00000000242	xrn2	92	97.197	ENSPREG00000012452	xrn2	99	97.194	Poecilia_reticulata
ENSXMAG00000000242	xrn2	92	78.589	ENSPPYG00000010755	XRN2	100	68.243	Pongo_abelii
ENSXMAG00000000242	xrn2	92	78.589	ENSPCAG00000011191	XRN2	100	64.573	Procavia_capensis
ENSXMAG00000000242	xrn2	92	75.250	ENSPCOG00000016468	XRN2	100	62.795	Propithecus_coquereli
ENSXMAG00000000242	xrn2	93	63.943	ENSPVAG00000004596	XRN2	93	63.943	Pteropus_vampyrus
ENSXMAG00000000242	xrn2	92	84.672	ENSPNYG00000001765	xrn2	98	85.616	Pundamilia_nyererei
ENSXMAG00000000242	xrn2	92	86.131	ENSPNAG00000010956	xrn2	100	77.134	Pygocentrus_nattereri
ENSXMAG00000000242	xrn2	92	79.319	ENSRNOG00000011785	Xrn2	100	69.097	Rattus_norvegicus
ENSXMAG00000000242	xrn2	92	78.589	ENSRBIG00000036193	XRN2	100	74.699	Rhinopithecus_bieti
ENSXMAG00000000242	xrn2	92	78.589	ENSRROG00000044400	XRN2	90	68.551	Rhinopithecus_roxellana
ENSXMAG00000000242	xrn2	94	49.412	YOR048C	RAT1	63	53.511	Saccharomyces_cerevisiae
ENSXMAG00000000242	xrn2	92	78.832	ENSSBOG00000021014	XRN2	100	68.345	Saimiri_boliviensis_boliviensis
ENSXMAG00000000242	xrn2	93	86.165	ENSSFOG00015001091	xrn2	100	75.792	Scleropages_formosus
ENSXMAG00000000242	xrn2	92	88.321	ENSSMAG00000007834	xrn2	100	82.843	Scophthalmus_maximus
ENSXMAG00000000242	xrn2	92	87.893	ENSSDUG00000012802	xrn2	99	85.261	Seriola_dumerili
ENSXMAG00000000242	xrn2	92	89.538	ENSSLDG00000021273	xrn2	98	87.886	Seriola_lalandi_dorsalis
ENSXMAG00000000242	xrn2	69	96.000	ENSSARG00000005859	-	56	96.000	Sorex_araneus
ENSXMAG00000000242	xrn2	92	80.292	ENSSPUG00000005485	XRN2	95	68.532	Sphenodon_punctatus
ENSXMAG00000000242	xrn2	100	84.821	ENSSPAG00000016027	xrn2	99	84.545	Stegastes_partitus
ENSXMAG00000000242	xrn2	92	79.075	ENSSSCG00000007109	XRN2	100	66.906	Sus_scrofa
ENSXMAG00000000242	xrn2	92	77.724	ENSTGUG00000007535	XRN2	100	67.278	Taeniopygia_guttata
ENSXMAG00000000242	xrn2	92	88.321	ENSTRUG00000015489	xrn2	100	79.919	Takifugu_rubripes
ENSXMAG00000000242	xrn2	92	87.651	ENSTNIG00000010712	xrn2	100	76.797	Tetraodon_nigroviridis
ENSXMAG00000000242	xrn2	92	78.345	ENSTBEG00000004119	XRN2	100	67.857	Tupaia_belangeri
ENSXMAG00000000242	xrn2	92	78.589	ENSTTRG00000009087	XRN2	93	76.543	Tursiops_truncatus
ENSXMAG00000000242	xrn2	99	74.887	ENSUAMG00000024634	XRN2	100	68.345	Ursus_americanus
ENSXMAG00000000242	xrn2	97	68.532	ENSUMAG00000004012	XRN2	95	67.687	Ursus_maritimus
ENSXMAG00000000242	xrn2	81	81.230	ENSVPAG00000010694	XRN2	85	81.230	Vicugna_pacos
ENSXMAG00000000242	xrn2	92	79.075	ENSVVUG00000012178	XRN2	100	68.345	Vulpes_vulpes
ENSXMAG00000000242	xrn2	92	82.238	ENSXETG00000023501	xrn2	99	69.525	Xenopus_tropicalis