EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000000506 (Gene tree)
Gene ID: 102219591
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 21416 bases
Position: chr7:2449605-2471020
Accession: 102219591
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000000508	Rif1_N	PF12231.8	2.5e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000000510	-	6576	XM_023336933	ENSXMAP00000000508	2191 (aa)	XP_023192701	M3ZE66

Gene Model

Click here to download ENSXMAG00000000506's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000000506's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000000506	rif1	64	48.482	ENSG00000080345	RIF1	89	55.423	Homo_sapiens
ENSXMAG00000000506	rif1	99	61.290	ENSAPOG00000011073	rif1	96	61.663	Acanthochromis_polyacanthus
ENSXMAG00000000506	rif1	63	48.565	ENSAMEG00000008461	RIF1	64	48.224	Ailuropoda_melanoleuca
ENSXMAG00000000506	rif1	95	66.102	ENSACIG00000017765	rif1	100	65.710	Amphilophus_citrinellus
ENSXMAG00000000506	rif1	99	60.534	ENSAOCG00000017231	rif1	93	62.298	Amphiprion_ocellaris
ENSXMAG00000000506	rif1	97	71.907	ENSAPEG00000013228	rif1	100	71.907	Amphiprion_percula
ENSXMAG00000000506	rif1	99	60.606	ENSATEG00000022887	rif1	97	60.606	Anabas_testudineus
ENSXMAG00000000506	rif1	50	49.133	ENSAPLG00000007092	RIF1	53	49.385	Anas_platyrhynchos
ENSXMAG00000000506	rif1	67	47.297	ENSACAG00000003714	RIF1	62	48.649	Anolis_carolinensis
ENSXMAG00000000506	rif1	66	49.882	ENSANAG00000024840	RIF1	64	49.489	Aotus_nancymaae
ENSXMAG00000000506	rif1	86	52.097	ENSAMXG00000010910	rif1	76	52.258	Astyanax_mexicanus
ENSXMAG00000000506	rif1	65	49.591	ENSBTAG00000021020	RIF1	61	49.319	Bos_taurus
ENSXMAG00000000506	rif1	66	49.449	ENSCJAG00000003138	RIF1	65	49.449	Callithrix_jacchus
ENSXMAG00000000506	rif1	70	48.084	ENSCAFG00000005670	RIF1	64	47.928	Canis_familiaris
ENSXMAG00000000506	rif1	75	48.084	ENSCAFG00020016401	RIF1	73	47.928	Canis_lupus_dingo
ENSXMAG00000000506	rif1	66	49.234	ENSCHIG00000020327	RIF1	63	49.073	Capra_hircus
ENSXMAG00000000506	rif1	63	46.592	ENSTSYG00000008861	RIF1	62	46.523	Carlito_syrichta
ENSXMAG00000000506	rif1	55	37.876	ENSCAPG00000008957	RIF1	66	37.573	Cavia_aperea
ENSXMAG00000000506	rif1	63	47.494	ENSCCAG00000024760	RIF1	62	47.335	Cebus_capucinus
ENSXMAG00000000506	rif1	68	48.796	ENSCATG00000033353	RIF1	66	48.676	Cercocebus_atys
ENSXMAG00000000506	rif1	61	49.065	ENSCLAG00000001517	RIF1	62	48.768	Chinchilla_lanigera
ENSXMAG00000000506	rif1	67	49.444	ENSCSAG00000016089	RIF1	65	49.481	Chlorocebus_sabaeus
ENSXMAG00000000506	rif1	63	51.111	ENSCHOG00000007187	RIF1	60	51.111	Choloepus_hoffmanni
ENSXMAG00000000506	rif1	70	50.933	ENSCPBG00000025885	RIF1	75	50.568	Chrysemys_picta_bellii
ENSXMAG00000000506	rif1	66	47.463	ENSCANG00000028962	RIF1	64	48.273	Colobus_angolensis_palliatus
ENSXMAG00000000506	rif1	66	47.310	ENSCGRG00001024589	Rif1	67	46.907	Cricetulus_griseus_chok1gshd
ENSXMAG00000000506	rif1	65	48.613	ENSCGRG00000010713	Rif1	65	48.532	Cricetulus_griseus_crigri
ENSXMAG00000000506	rif1	97	53.411	ENSCSEG00000003945	rif1	74	57.490	Cynoglossus_semilaevis
ENSXMAG00000000506	rif1	99	77.358	ENSCVAG00000022479	rif1	97	77.358	Cyprinodon_variegatus
ENSXMAG00000000506	rif1	71	54.267	ENSDARG00000062650	rif1	72	54.043	Danio_rerio
ENSXMAG00000000506	rif1	65	46.807	ENSDNOG00000011194	RIF1	62	46.646	Dasypus_novemcinctus
ENSXMAG00000000506	rif1	64	44.093	ENSETEG00000012421	RIF1	64	44.015	Echinops_telfairi
ENSXMAG00000000506	rif1	64	48.400	ENSEASG00005023434	RIF1	62	48.193	Equus_asinus_asinus
ENSXMAG00000000506	rif1	65	48.700	ENSECAG00000012679	RIF1	63	48.456	Equus_caballus
ENSXMAG00000000506	rif1	73	57.576	ENSELUG00000006826	rif1	62	59.009	Esox_lucius
ENSXMAG00000000506	rif1	67	48.009	ENSFCAG00000029742	RIF1	66	47.812	Felis_catus
ENSXMAG00000000506	rif1	66	48.565	ENSFDAG00000006538	RIF1	66	48.502	Fukomys_damarensis
ENSXMAG00000000506	rif1	99	71.294	ENSFHEG00000013721	rif1	99	69.530	Fundulus_heteroclitus
ENSXMAG00000000506	rif1	69	57.692	ENSGMOG00000003517	rif1	98	58.252	Gadus_morhua
ENSXMAG00000000506	rif1	52	46.172	ENSGALG00000012484	RIF1	56	46.166	Gallus_gallus
ENSXMAG00000000506	rif1	90	95.960	ENSGAFG00000017196	rif1	97	95.652	Gambusia_affinis
ENSXMAG00000000506	rif1	96	53.592	ENSGACG00000008579	rif1	86	64.126	Gasterosteus_aculeatus
ENSXMAG00000000506	rif1	66	51.109	ENSGAGG00000012595	RIF1	76	47.759	Gopherus_agassizii
ENSXMAG00000000506	rif1	55	55.523	ENSGGOG00000040178	RIF1	59	55.523	Gorilla_gorilla
ENSXMAG00000000506	rif1	99	65.517	ENSHBUG00000007125	rif1	97	65.517	Haplochromis_burtoni
ENSXMAG00000000506	rif1	59	48.792	ENSHGLG00100009807	RIF1	61	48.726	Heterocephalus_glaber_male
ENSXMAG00000000506	rif1	99	58.885	ENSHCOG00000015943	rif1	87	58.978	Hippocampus_comes
ENSXMAG00000000506	rif1	82	54.639	ENSIPUG00000021703	rif1	75	54.594	Ictalurus_punctatus
ENSXMAG00000000506	rif1	67	48.589	ENSSTOG00000020712	RIF1	64	48.473	Ictidomys_tridecemlineatus
ENSXMAG00000000506	rif1	52	48.306	ENSJJAG00000023000	Rif1	51	48.306	Jaculus_jaculus
ENSXMAG00000000506	rif1	99	58.914	ENSKMAG00000002852	rif1	97	58.392	Kryptolebias_marmoratus
ENSXMAG00000000506	rif1	98	61.176	ENSLBEG00000023196	rif1	89	61.360	Labrus_bergylta
ENSXMAG00000000506	rif1	57	50.328	ENSLACG00000005425	RIF1	78	50.036	Latimeria_chalumnae
ENSXMAG00000000506	rif1	81	47.948	ENSLOCG00000002657	rif1	88	48.348	Lepisosteus_oculatus
ENSXMAG00000000506	rif1	67	48.903	ENSLAFG00000009796	RIF1	66	48.549	Loxodonta_africana
ENSXMAG00000000506	rif1	68	48.873	ENSMFAG00000032233	RIF1	66	48.676	Macaca_fascicularis
ENSXMAG00000000506	rif1	68	48.873	ENSMMUG00000008611	RIF1	66	48.676	Macaca_mulatta
ENSXMAG00000000506	rif1	68	48.794	ENSMNEG00000031616	RIF1	66	48.165	Macaca_nemestrina
ENSXMAG00000000506	rif1	68	48.796	ENSMLEG00000042945	RIF1	65	49.322	Mandrillus_leucophaeus
ENSXMAG00000000506	rif1	86	62.269	ENSMAMG00000001745	rif1	86	61.190	Mastacembelus_armatus
ENSXMAG00000000506	rif1	99	55.823	ENSMZEG00005020920	rif1	99	55.356	Maylandia_zebra
ENSXMAG00000000506	rif1	63	49.496	ENSMGAG00000012732	RIF1	65	49.455	Meleagris_gallopavo
ENSXMAG00000000506	rif1	60	63.143	ENSMAUG00000013158	Rif1	62	61.983	Mesocricetus_auratus
ENSXMAG00000000506	rif1	75	48.370	ENSMICG00000046127	RIF1	63	48.523	Microcebus_murinus
ENSXMAG00000000506	rif1	64	46.499	ENSMOCG00000009381	Rif1	64	47.343	Microtus_ochrogaster
ENSXMAG00000000506	rif1	99	51.760	ENSMMOG00000006519	rif1	99	50.142	Mola_mola
ENSXMAG00000000506	rif1	77	58.987	ENSMALG00000016759	rif1	99	58.167	Monopterus_albus
ENSXMAG00000000506	rif1	64	47.257	MGP_CAROLIEiJ_G0023555	Rif1	65	47.303	Mus_caroli
ENSXMAG00000000506	rif1	65	47.928	ENSMUSG00000036202	Rif1	65	47.786	Mus_musculus
ENSXMAG00000000506	rif1	64	44.524	MGP_PahariEiJ_G0025006	Rif1	63	45.272	Mus_pahari
ENSXMAG00000000506	rif1	65	48.311	MGP_SPRETEiJ_G0024476	Rif1	65	48.047	Mus_spretus
ENSXMAG00000000506	rif1	64	48.095	ENSMPUG00000000371	RIF1	63	48.089	Mustela_putorius_furo
ENSXMAG00000000506	rif1	53	45.517	ENSMLUG00000003376	RIF1	60	45.322	Myotis_lucifugus
ENSXMAG00000000506	rif1	67	48.142	ENSNGAG00000009268	Rif1	69	48.081	Nannospalax_galili
ENSXMAG00000000506	rif1	99	55.305	ENSNBRG00000014257	rif1	99	55.639	Neolamprologus_brichardi
ENSXMAG00000000506	rif1	66	47.920	ENSNLEG00000010955	RIF1	65	47.799	Nomascus_leucogenys
ENSXMAG00000000506	rif1	68	45.703	ENSODEG00000003950	RIF1	66	46.135	Octodon_degus
ENSXMAG00000000506	rif1	99	57.908	ENSONIG00000013657	rif1	100	58.372	Oreochromis_niloticus
ENSXMAG00000000506	rif1	54	53.589	ENSOANG00000006078	-	54	53.365	Ornithorhynchus_anatinus
ENSXMAG00000000506	rif1	54	47.589	ENSOCUG00000017435	RIF1	53	46.751	Oryctolagus_cuniculus
ENSXMAG00000000506	rif1	99	52.273	ENSORLG00020001302	rif1	99	51.473	Oryzias_latipes_hni
ENSXMAG00000000506	rif1	99	51.754	ENSORLG00015000009	rif1	99	51.136	Oryzias_latipes_hsok
ENSXMAG00000000506	rif1	99	51.590	ENSOMEG00000021513	rif1	99	51.217	Oryzias_melastigma
ENSXMAG00000000506	rif1	63	48.601	ENSOGAG00000006141	RIF1	63	48.359	Otolemur_garnettii
ENSXMAG00000000506	rif1	67	48.892	ENSOARG00000008930	RIF1	63	48.734	Ovis_aries
ENSXMAG00000000506	rif1	64	48.638	ENSPPAG00000023754	RIF1	63	48.327	Pan_paniscus
ENSXMAG00000000506	rif1	67	47.853	ENSPPRG00000003618	RIF1	66	47.853	Panthera_pardus
ENSXMAG00000000506	rif1	67	47.853	ENSPTIG00000020652	RIF1	66	47.853	Panthera_tigris_altaica
ENSXMAG00000000506	rif1	64	48.716	ENSPTRG00000012534	RIF1	63	48.405	Pan_troglodytes
ENSXMAG00000000506	rif1	68	48.873	ENSPANG00000008525	RIF1	66	48.754	Papio_anubis
ENSXMAG00000000506	rif1	79	57.682	ENSPMGG00000016141	rif1	94	56.382	Periophthalmus_magnuspinnatus
ENSXMAG00000000506	rif1	64	48.443	ENSPEMG00000000446	Rif1	65	48.443	Peromyscus_maniculatus_bairdii
ENSXMAG00000000506	rif1	93	86.014	ENSPFOG00000000554	-	100	83.634	Poecilia_formosa
ENSXMAG00000000506	rif1	99	85.170	ENSPFOG00000017804	rif1	97	85.349	Poecilia_formosa
ENSXMAG00000000506	rif1	100	86.268	ENSPLAG00000017945	rif1	100	86.135	Poecilia_latipinna
ENSXMAG00000000506	rif1	90	85.556	ENSPMEG00000006897	-	97	85.757	Poecilia_mexicana
ENSXMAG00000000506	rif1	100	86.446	ENSPREG00000018052	rif1	100	86.428	Poecilia_reticulata
ENSXMAG00000000506	rif1	75	48.794	ENSPPYG00000012846	RIF1	63	48.598	Pongo_abelii
ENSXMAG00000000506	rif1	64	48.367	ENSPCOG00000027888	RIF1	63	48.287	Propithecus_coquereli
ENSXMAG00000000506	rif1	57	58.078	ENSPVAG00000014276	RIF1	56	58.078	Pteropus_vampyrus
ENSXMAG00000000506	rif1	99	55.447	ENSPNYG00000012940	rif1	99	54.684	Pundamilia_nyererei
ENSXMAG00000000506	rif1	88	50.679	ENSPNAG00000016685	rif1	80	52.674	Pygocentrus_nattereri
ENSXMAG00000000506	rif1	64	45.907	ENSRNOG00000054901	Rif1	65	44.698	Rattus_norvegicus
ENSXMAG00000000506	rif1	66	48.287	ENSRBIG00000003704	RIF1	65	48.284	Rhinopithecus_bieti
ENSXMAG00000000506	rif1	66	48.794	ENSRROG00000028206	RIF1	65	48.716	Rhinopithecus_roxellana
ENSXMAG00000000506	rif1	62	49.817	ENSSBOG00000029530	RIF1	63	49.543	Saimiri_boliviensis_boliviensis
ENSXMAG00000000506	rif1	65	59.289	ENSSFOG00015021539	rif1	77	54.989	Scleropages_formosus
ENSXMAG00000000506	rif1	99	65.200	ENSSMAG00000011704	rif1	90	69.778	Scophthalmus_maximus
ENSXMAG00000000506	rif1	94	70.213	ENSSDUG00000015632	rif1	97	70.213	Seriola_dumerili
ENSXMAG00000000506	rif1	99	66.667	ENSSLDG00000019531	rif1	97	66.667	Seriola_lalandi_dorsalis
ENSXMAG00000000506	rif1	64	50.302	ENSSPUG00000003062	RIF1	66	50.086	Sphenodon_punctatus
ENSXMAG00000000506	rif1	64	75.676	ENSSPAG00000018359	rif1	99	75.676	Stegastes_partitus
ENSXMAG00000000506	rif1	66	48.110	ENSSSCG00000016395	RIF1	65	48.151	Sus_scrofa
ENSXMAG00000000506	rif1	97	53.829	ENSTRUG00000015808	rif1	87	62.092	Takifugu_rubripes
ENSXMAG00000000506	rif1	99	51.347	ENSTNIG00000011538	rif1	99	51.215	Tetraodon_nigroviridis
ENSXMAG00000000506	rif1	56	52.449	ENSTBEG00000016082	RIF1	55	52.449	Tupaia_belangeri
ENSXMAG00000000506	rif1	64	49.239	ENSTTRG00000011190	RIF1	63	48.608	Tursiops_truncatus
ENSXMAG00000000506	rif1	54	45.911	ENSUAMG00000026385	RIF1	58	45.970	Ursus_americanus
ENSXMAG00000000506	rif1	63	47.604	ENSUMAG00000000337	RIF1	63	47.444	Ursus_maritimus
ENSXMAG00000000506	rif1	72	45.638	ENSVPAG00000002162	RIF1	68	45.400	Vicugna_pacos
ENSXMAG00000000506	rif1	73	48.279	ENSVVUG00000011293	RIF1	72	48.122	Vulpes_vulpes
ENSXMAG00000000506	rif1	69	44.626	ENSXETG00000004530	rif1	70	44.139	Xenopus_tropicalis