EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000000608 (Gene tree)
Gene ID: 102223905
Gene Symbol: msi2a
Alias: cb746|fi47b09|msi2|wu:fb02d08|wu:fi32d12|wu:fi47b09
Full Name: musashi RNA binding protein 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 292066 bases
Position: chr11:21977862-22269927
Accession: 102223905
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000000604	RRM_1	PF00076.22	2.2e-33	1	2
ENSXMAP00000000604	RRM_1	PF00076.22	2.2e-33	2	2
ENSXMAP00000038216	RRM_1	PF00076.22	3.1e-33	1	2
ENSXMAP00000038216	RRM_1	PF00076.22	3.1e-33	2	2
ENSXMAP00000027105	RRM_1	PF00076.22	4.9e-33	1	2
ENSXMAP00000027105	RRM_1	PF00076.22	4.9e-33	2	2
ENSXMAP00000025454	RRM_1	PF00076.22	4.1e-29	1	2
ENSXMAP00000025454	RRM_1	PF00076.22	4.1e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000032773	-	1414	XM_023342227	ENSXMAP00000027105	407 (aa)	XP_023197995	UPI000B37047D
ENSXMAT00000000606	-	1114	-	ENSXMAP00000000604	307 (aa)	-	M3ZEG2
ENSXMAT00000021995	-	1234	XM_023342230	ENSXMAP00000038216	347 (aa)	XP_023197998	UPI000644C51E
ENSXMAT00000026810	-	912	-	ENSXMAP00000025454	303 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000000608's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000000608's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000000608	msi2a	100	87.320	ENSG00000153944	MSI2	97	93.227	Homo_sapiens
ENSXMAG00000000608	msi2a	100	99.509	ENSAPOG00000001658	msi2a	100	100.000	Acanthochromis_polyacanthus
ENSXMAG00000000608	msi2a	94	87.879	ENSAMEG00000002697	MSI2	99	88.344	Ailuropoda_melanoleuca
ENSXMAG00000000608	msi2a	99	98.413	ENSACIG00000009475	msi2a	100	90.024	Amphilophus_citrinellus
ENSXMAG00000000608	msi2a	58	91.111	ENSAOCG00000014822	msi2a	69	91.111	Amphiprion_ocellaris
ENSXMAG00000000608	msi2a	100	99.424	ENSAPEG00000007706	msi2a	100	99.424	Amphiprion_percula
ENSXMAG00000000608	msi2a	100	99.509	ENSATEG00000010498	msi2a	100	100.000	Anabas_testudineus
ENSXMAG00000000608	msi2a	92	92.424	ENSATEG00000003301	-	97	95.025	Anabas_testudineus
ENSXMAG00000000608	msi2a	93	93.011	ENSACAG00000005452	MSI2	88	75.603	Anolis_carolinensis
ENSXMAG00000000608	msi2a	100	87.320	ENSANAG00000037827	MSI2	97	93.227	Aotus_nancymaae
ENSXMAG00000000608	msi2a	100	99.509	ENSACLG00000007752	msi2a	100	99.588	Astatotilapia_calliptera
ENSXMAG00000000608	msi2a	100	96.296	ENSAMXG00000032796	msi2a	97	96.414	Astyanax_mexicanus
ENSXMAG00000000608	msi2a	100	96.296	ENSAMXG00000010474	msi2b	96	93.980	Astyanax_mexicanus
ENSXMAG00000000608	msi2a	97	88.435	ENSBTAG00000004406	MSI2	94	94.348	Bos_taurus
ENSXMAG00000000608	msi2a	76	59.514	WBGene00003423	msi-1	73	61.638	Caenorhabditis_elegans
ENSXMAG00000000608	msi2a	100	87.320	ENSCJAG00000013998	MSI2	97	93.227	Callithrix_jacchus
ENSXMAG00000000608	msi2a	94	87.261	ENSCAFG00020025620	MSI2	81	86.875	Canis_lupus_dingo
ENSXMAG00000000608	msi2a	100	86.455	ENSCHIG00000016580	MSI2	97	91.633	Capra_hircus
ENSXMAG00000000608	msi2a	92	87.687	ENSCPOG00000034042	MSI2	96	87.317	Cavia_porcellus
ENSXMAG00000000608	msi2a	100	87.320	ENSCCAG00000033927	MSI2	97	93.227	Cebus_capucinus
ENSXMAG00000000608	msi2a	97	87.798	ENSCATG00000040879	MSI2	97	92.829	Cercocebus_atys
ENSXMAG00000000608	msi2a	100	87.464	ENSCLAG00000014325	MSI2	100	87.896	Chinchilla_lanigera
ENSXMAG00000000608	msi2a	100	87.320	ENSCSAG00000005633	MSI2	97	93.227	Chlorocebus_sabaeus
ENSXMAG00000000608	msi2a	92	65.468	ENSCHOG00000008660	MSI2	83	84.314	Choloepus_hoffmanni
ENSXMAG00000000608	msi2a	93	94.505	ENSCPBG00000009942	MSI2	89	94.475	Chrysemys_picta_bellii
ENSXMAG00000000608	msi2a	89	53.171	ENSCING00000018579	-	90	52.632	Ciona_intestinalis
ENSXMAG00000000608	msi2a	87	53.667	ENSCSAVG00000010397	-	95	56.803	Ciona_savignyi
ENSXMAG00000000608	msi2a	92	91.943	ENSCANG00000036414	MSI2	100	88.308	Colobus_angolensis_palliatus
ENSXMAG00000000608	msi2a	100	86.782	ENSCGRG00001013330	Msi2	97	92.829	Cricetulus_griseus_chok1gshd
ENSXMAG00000000608	msi2a	94	87.613	ENSCGRG00000003141	Msi2	100	88.073	Cricetulus_griseus_crigri
ENSXMAG00000000608	msi2a	80	79.006	ENSCSEG00000013557	msi2a	79	90.769	Cynoglossus_semilaevis
ENSXMAG00000000608	msi2a	61	77.596	ENSCSEG00000013549	msi2a	100	77.596	Cynoglossus_semilaevis
ENSXMAG00000000608	msi2a	99	79.743	ENSCSEG00000003266	-	97	81.673	Cynoglossus_semilaevis
ENSXMAG00000000608	msi2a	100	100.000	ENSCVAG00000017075	msi2a	100	99.712	Cyprinodon_variegatus
ENSXMAG00000000608	msi2a	100	97.119	ENSDARG00000032614	msi2b	100	97.030	Danio_rerio
ENSXMAG00000000608	msi2a	100	93.827	ENSDARG00000033901	msi2a	100	84.275	Danio_rerio
ENSXMAG00000000608	msi2a	92	92.701	ENSDNOG00000014501	MSI2	97	93.839	Dasypus_novemcinctus
ENSXMAG00000000608	msi2a	55	96.460	ENSDORG00000028440	-	100	96.460	Dipodomys_ordii
ENSXMAG00000000608	msi2a	80	80.328	ENSDORG00000005394	Msi2	79	87.692	Dipodomys_ordii
ENSXMAG00000000608	msi2a	95	56.410	FBgn0260943	Rbp6	90	64.626	Drosophila_melanogaster
ENSXMAG00000000608	msi2a	72	72.368	ENSETEG00000012450	-	64	72.368	Echinops_telfairi
ENSXMAG00000000608	msi2a	94	65.161	ENSEBUG00000006732	msi2a	75	79.524	Eptatretus_burgeri
ENSXMAG00000000608	msi2a	93	92.500	ENSEASG00005002965	MSI2	97	79.830	Equus_asinus_asinus
ENSXMAG00000000608	msi2a	100	85.237	ENSECAG00000011435	MSI2	100	85.634	Equus_caballus
ENSXMAG00000000608	msi2a	89	77.075	ENSEEUG00000007810	MSI2	100	77.075	Erinaceus_europaeus
ENSXMAG00000000608	msi2a	99	95.318	ENSELUG00000011747	msi2a	96	95.318	Esox_lucius
ENSXMAG00000000608	msi2a	100	95.902	ENSELUG00000001361	msi2b	100	85.990	Esox_lucius
ENSXMAG00000000608	msi2a	100	87.320	ENSFCAG00000041686	MSI2	97	93.227	Felis_catus
ENSXMAG00000000608	msi2a	51	75.000	ENSFCAG00000033787	-	82	75.000	Felis_catus
ENSXMAG00000000608	msi2a	94	87.879	ENSFDAG00000016118	MSI2	100	88.344	Fukomys_damarensis
ENSXMAG00000000608	msi2a	100	100.000	ENSFHEG00000000084	msi2a	100	100.000	Fundulus_heteroclitus
ENSXMAG00000000608	msi2a	59	97.115	ENSGMOG00000007596	-	100	97.115	Gadus_morhua
ENSXMAG00000000608	msi2a	100	86.610	ENSGALG00000005567	MSI2	100	87.032	Gallus_gallus
ENSXMAG00000000608	msi2a	100	90.584	ENSGAFG00000006974	msi2a	100	90.584	Gambusia_affinis
ENSXMAG00000000608	msi2a	100	88.934	ENSGAGG00000016542	MSI2	100	84.918	Gopherus_agassizii
ENSXMAG00000000608	msi2a	92	91.943	ENSGGOG00000013182	MSI2	100	88.308	Gorilla_gorilla
ENSXMAG00000000608	msi2a	100	99.509	ENSHBUG00000020800	msi2a	100	99.588	Haplochromis_burtoni
ENSXMAG00000000608	msi2a	100	78.632	ENSHGLG00000012444	MSI2	100	78.963	Heterocephalus_glaber_female
ENSXMAG00000000608	msi2a	76	83.491	ENSHGLG00100003744	MSI2	100	84.135	Heterocephalus_glaber_male
ENSXMAG00000000608	msi2a	55	96.491	ENSHGLG00100004028	-	87	96.491	Heterocephalus_glaber_male
ENSXMAG00000000608	msi2a	100	98.526	ENSHCOG00000000266	msi2a	100	98.526	Hippocampus_comes
ENSXMAG00000000608	msi2a	98	82.422	ENSHCOG00000017241	-	98	71.820	Hippocampus_comes
ENSXMAG00000000608	msi2a	100	95.062	ENSIPUG00000021097	msi2a	100	95.062	Ictalurus_punctatus
ENSXMAG00000000608	msi2a	100	96.296	ENSIPUG00000003732	msi2b	100	86.486	Ictalurus_punctatus
ENSXMAG00000000608	msi2a	92	87.687	ENSSTOG00000007884	MSI2	96	87.317	Ictidomys_tridecemlineatus
ENSXMAG00000000608	msi2a	78	75.258	ENSJJAG00000006292	-	100	76.382	Jaculus_jaculus
ENSXMAG00000000608	msi2a	55	96.460	ENSJJAG00000009467	-	100	96.460	Jaculus_jaculus
ENSXMAG00000000608	msi2a	100	100.000	ENSKMAG00000009494	msi2a	100	94.840	Kryptolebias_marmoratus
ENSXMAG00000000608	msi2a	93	86.528	ENSLBEG00000026223	-	100	86.528	Labrus_bergylta
ENSXMAG00000000608	msi2a	100	99.509	ENSLBEG00000007061	msi2a	100	99.509	Labrus_bergylta
ENSXMAG00000000608	msi2a	55	92.941	ENSLACG00000016798	MSI2	98	92.308	Latimeria_chalumnae
ENSXMAG00000000608	msi2a	100	97.119	ENSLOCG00000004675	msi2b	100	88.206	Lepisosteus_oculatus
ENSXMAG00000000608	msi2a	92	91.943	ENSMFAG00000003775	MSI2	100	88.308	Macaca_fascicularis
ENSXMAG00000000608	msi2a	92	91.943	ENSMMUG00000002069	MSI2	100	88.308	Macaca_mulatta
ENSXMAG00000000608	msi2a	100	87.320	ENSMNEG00000045275	MSI2	97	93.227	Macaca_nemestrina
ENSXMAG00000000608	msi2a	92	91.943	ENSMLEG00000033888	MSI2	100	88.308	Mandrillus_leucophaeus
ENSXMAG00000000608	msi2a	100	94.650	ENSMAMG00000002488	-	99	94.040	Mastacembelus_armatus
ENSXMAG00000000608	msi2a	100	99.349	ENSMAMG00000010503	msi2a	100	100.000	Mastacembelus_armatus
ENSXMAG00000000608	msi2a	100	99.509	ENSMZEG00005007676	msi2a	100	99.509	Maylandia_zebra
ENSXMAG00000000608	msi2a	100	86.932	ENSMAUG00000003862	Msi2	100	87.356	Mesocricetus_auratus
ENSXMAG00000000608	msi2a	100	87.320	ENSMICG00000013598	-	97	93.227	Microcebus_murinus
ENSXMAG00000000608	msi2a	100	70.977	ENSMICG00000032913	-	96	78.261	Microcebus_murinus
ENSXMAG00000000608	msi2a	100	87.179	ENSMOCG00000005820	Msi2	100	87.608	Microtus_ochrogaster
ENSXMAG00000000608	msi2a	96	92.593	ENSMMOG00000008348	msi2a	90	100.000	Mola_mola
ENSXMAG00000000608	msi2a	76	83.019	ENSMODG00000014790	MSI2	100	83.654	Monodelphis_domestica
ENSXMAG00000000608	msi2a	100	99.712	ENSMALG00000000071	msi2a	100	100.000	Monopterus_albus
ENSXMAG00000000608	msi2a	100	87.179	MGP_CAROLIEiJ_G0016948	Msi2	100	96.460	Mus_caroli
ENSXMAG00000000608	msi2a	100	87.179	ENSMUSG00000069769	Msi2	100	96.460	Mus_musculus
ENSXMAG00000000608	msi2a	100	87.179	MGP_PahariEiJ_G0018079	Msi2	100	96.460	Mus_pahari
ENSXMAG00000000608	msi2a	100	87.179	MGP_SPRETEiJ_G0017795	Msi2	100	96.460	Mus_spretus
ENSXMAG00000000608	msi2a	97	88.776	ENSMPUG00000015377	MSI2	94	94.348	Mustela_putorius_furo
ENSXMAG00000000608	msi2a	97	88.776	ENSMLUG00000007865	MSI2	94	93.913	Myotis_lucifugus
ENSXMAG00000000608	msi2a	100	87.179	ENSNGAG00000017807	Msi2	100	87.608	Nannospalax_galili
ENSXMAG00000000608	msi2a	100	99.588	ENSNBRG00000014596	msi2a	96	99.333	Neolamprologus_brichardi
ENSXMAG00000000608	msi2a	92	91.943	ENSNLEG00000008059	MSI2	96	92.891	Nomascus_leucogenys
ENSXMAG00000000608	msi2a	72	83.553	ENSOPRG00000000872	-	64	83.553	Ochotona_princeps
ENSXMAG00000000608	msi2a	100	87.464	ENSODEG00000011974	MSI2	100	87.896	Octodon_degus
ENSXMAG00000000608	msi2a	62	100.000	ENSONIG00000001972	msi2a	84	100.000	Oreochromis_niloticus
ENSXMAG00000000608	msi2a	97	92.308	ENSOANG00000005667	MSI2	99	78.723	Ornithorhynchus_anatinus
ENSXMAG00000000608	msi2a	97	88.776	ENSOCUG00000010440	MSI2	94	94.348	Oryctolagus_cuniculus
ENSXMAG00000000608	msi2a	100	100.000	ENSORLG00000009671	msi2a	100	95.086	Oryzias_latipes
ENSXMAG00000000608	msi2a	100	99.754	ENSORLG00020021556	msi2a	100	100.000	Oryzias_latipes_hni
ENSXMAG00000000608	msi2a	100	100.000	ENSORLG00015004592	msi2a	100	95.086	Oryzias_latipes_hsok
ENSXMAG00000000608	msi2a	100	100.000	ENSOMEG00000000146	msi2a	100	100.000	Oryzias_melastigma
ENSXMAG00000000608	msi2a	97	85.034	ENSOGAG00000005621	MSI2	97	89.565	Otolemur_garnettii
ENSXMAG00000000608	msi2a	94	87.842	ENSPPAG00000037697	MSI2	100	88.308	Pan_paniscus
ENSXMAG00000000608	msi2a	95	89.965	ENSPPRG00000001848	MSI2	91	94.348	Panthera_pardus
ENSXMAG00000000608	msi2a	94	87.342	ENSPTIG00000021678	MSI2	96	87.821	Panthera_tigris_altaica
ENSXMAG00000000608	msi2a	78	75.314	ENSPTIG00000021873	-	91	75.314	Panthera_tigris_altaica
ENSXMAG00000000608	msi2a	92	91.943	ENSPTRG00000009437	MSI2	100	88.308	Pan_troglodytes
ENSXMAG00000000608	msi2a	100	87.320	ENSPANG00000022319	MSI2	97	93.227	Papio_anubis
ENSXMAG00000000608	msi2a	52	95.604	ENSPKIG00000017107	-	81	95.604	Paramormyrops_kingsleyae
ENSXMAG00000000608	msi2a	95	89.761	ENSPKIG00000007038	-	96	93.004	Paramormyrops_kingsleyae
ENSXMAG00000000608	msi2a	100	95.062	ENSPSIG00000008618	MSI2	100	80.941	Pelodiscus_sinensis
ENSXMAG00000000608	msi2a	99	98.667	ENSPMGG00000005888	msi2a	96	98.667	Periophthalmus_magnuspinnatus
ENSXMAG00000000608	msi2a	55	96.460	ENSPEMG00000021793	-	100	96.460	Peromyscus_maniculatus_bairdii
ENSXMAG00000000608	msi2a	100	85.794	ENSPCIG00000006063	MSI2	100	86.197	Phascolarctos_cinereus
ENSXMAG00000000608	msi2a	61	99.048	ENSPFOG00000019337	MSI2	92	99.048	Poecilia_formosa
ENSXMAG00000000608	msi2a	62	100.000	ENSPLAG00000000436	msi2a	72	100.000	Poecilia_latipinna
ENSXMAG00000000608	msi2a	58	100.000	ENSPMEG00000013247	msi2a	75	100.000	Poecilia_mexicana
ENSXMAG00000000608	msi2a	100	99.754	ENSPREG00000000881	msi2a	100	99.754	Poecilia_reticulata
ENSXMAG00000000608	msi2a	92	89.286	ENSPPYG00000008244	-	96	89.441	Pongo_abelii
ENSXMAG00000000608	msi2a	63	87.692	ENSPCAG00000010552	MSI2	95	87.692	Procavia_capensis
ENSXMAG00000000608	msi2a	55	95.420	ENSPCOG00000019195	-	93	95.420	Propithecus_coquereli
ENSXMAG00000000608	msi2a	92	84.532	ENSPVAG00000017053	MSI2	97	83.796	Pteropus_vampyrus
ENSXMAG00000000608	msi2a	100	99.509	ENSPNYG00000018393	msi2a	100	99.588	Pundamilia_nyererei
ENSXMAG00000000608	msi2a	100	95.885	ENSPNAG00000014957	msi2a	97	96.016	Pygocentrus_nattereri
ENSXMAG00000000608	msi2a	100	96.296	ENSPNAG00000000844	msi2b	96	93.667	Pygocentrus_nattereri
ENSXMAG00000000608	msi2a	92	92.424	ENSRNOG00000025338	Msi2	97	93.532	Rattus_norvegicus
ENSXMAG00000000608	msi2a	51	73.626	ENSRBIG00000032064	-	84	88.158	Rhinopithecus_bieti
ENSXMAG00000000608	msi2a	55	96.491	ENSRROG00000034421	-	92	96.491	Rhinopithecus_roxellana
ENSXMAG00000000608	msi2a	92	92.381	ENSSBOG00000026425	MSI2	100	88.308	Saimiri_boliviensis_boliviensis
ENSXMAG00000000608	msi2a	94	87.842	ENSSHAG00000008672	MSI2	100	88.308	Sarcophilus_harrisii
ENSXMAG00000000608	msi2a	93	89.510	ENSSFOG00015021687	-	97	93.243	Scleropages_formosus
ENSXMAG00000000608	msi2a	100	83.673	ENSSFOG00015012168	msi2b	100	68.765	Scleropages_formosus
ENSXMAG00000000608	msi2a	100	99.754	ENSSMAG00000018484	msi2a	100	100.000	Scophthalmus_maximus
ENSXMAG00000000608	msi2a	100	99.509	ENSSDUG00000014507	msi2a	100	100.000	Seriola_dumerili
ENSXMAG00000000608	msi2a	99	83.489	ENSSDUG00000021968	-	99	94.040	Seriola_dumerili
ENSXMAG00000000608	msi2a	100	99.509	ENSSLDG00000017172	msi2a	100	99.509	Seriola_lalandi_dorsalis
ENSXMAG00000000608	msi2a	62	92.405	ENSSPUG00000000913	-	94	92.405	Sphenodon_punctatus
ENSXMAG00000000608	msi2a	100	99.509	ENSSPAG00000017793	msi2a	100	99.509	Stegastes_partitus
ENSXMAG00000000608	msi2a	96	91.837	ENSSSCG00000038505	MSI2	97	93.227	Sus_scrofa
ENSXMAG00000000608	msi2a	76	83.491	ENSTGUG00000008452	MSI2	100	84.135	Taeniopygia_guttata
ENSXMAG00000000608	msi2a	97	98.477	ENSTRUG00000021248	msi2a	95	98.477	Takifugu_rubripes
ENSXMAG00000000608	msi2a	79	77.686	ENSTBEG00000001241	MSI2	73	77.686	Tupaia_belangeri
ENSXMAG00000000608	msi2a	93	84.034	ENSTTRG00000002189	MSI2	91	94.737	Tursiops_truncatus
ENSXMAG00000000608	msi2a	93	93.007	ENSUAMG00000000700	MSI2	96	94.595	Ursus_americanus
ENSXMAG00000000608	msi2a	89	91.803	ENSUMAG00000000505	MSI2	95	93.782	Ursus_maritimus
ENSXMAG00000000608	msi2a	60	81.768	ENSVPAG00000006837	-	62	81.868	Vicugna_pacos
ENSXMAG00000000608	msi2a	100	87.464	ENSVVUG00000011783	MSI2	98	92.411	Vulpes_vulpes
ENSXMAG00000000608	msi2a	100	100.000	ENSXCOG00000006113	msi2a	100	94.103	Xiphophorus_couchianus