EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000001397 (Gene tree)
Gene ID: 102225055
Gene Symbol: tsr1
Alias: fc52b09|wu:fc52b09|zgc:123319
Full Name: TSR1%2C ribosome maturation factor
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 13678 bases
Position: chr18:27347999-27361676
Accession: 102225055
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000001401	AARP2CN	PF08142.12	1.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000001404	-	3509	XM_014474644	ENSXMAP00000001401	859 (aa)	XP_014330130	M3ZGQ9

Gene Model

Click here to download ENSXMAG00000001397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000001397's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000001397	tsr1	96	54.327	ENSG00000167721	TSR1	99	54.031	Homo_sapiens
ENSXMAG00000001397	tsr1	97	85.150	ENSAPOG00000020891	tsr1	100	85.150	Acanthochromis_polyacanthus
ENSXMAG00000001397	tsr1	96	53.930	ENSAMEG00000007599	TSR1	99	53.421	Ailuropoda_melanoleuca
ENSXMAG00000001397	tsr1	97	81.227	ENSACIG00000007090	tsr1	100	81.227	Amphilophus_citrinellus
ENSXMAG00000001397	tsr1	97	84.838	ENSAOCG00000023284	tsr1	100	84.838	Amphiprion_ocellaris
ENSXMAG00000001397	tsr1	90	84.884	ENSAPEG00000008452	tsr1	100	84.884	Amphiprion_percula
ENSXMAG00000001397	tsr1	97	83.294	ENSATEG00000021961	tsr1	100	83.294	Anabas_testudineus
ENSXMAG00000001397	tsr1	87	57.733	ENSAPLG00000013422	TSR1	98	58.133	Anas_platyrhynchos
ENSXMAG00000001397	tsr1	69	50.498	ENSACAG00000000859	TSR1	92	49.669	Anolis_carolinensis
ENSXMAG00000001397	tsr1	96	54.348	ENSANAG00000031071	TSR1	99	54.401	Aotus_nancymaae
ENSXMAG00000001397	tsr1	97	84.072	ENSACLG00000007595	tsr1	100	83.473	Astatotilapia_calliptera
ENSXMAG00000001397	tsr1	96	55.502	ENSBTAG00000004225	TSR1	99	54.458	Bos_taurus
ENSXMAG00000001397	tsr1	93	39.729	WBGene00006497	tag-151	96	40.148	Caenorhabditis_elegans
ENSXMAG00000001397	tsr1	96	53.382	ENSCJAG00000012456	TSR1	99	53.083	Callithrix_jacchus
ENSXMAG00000001397	tsr1	96	54.710	ENSCAFG00000002106	-	99	54.142	Canis_familiaris
ENSXMAG00000001397	tsr1	86	52.933	ENSCAFG00000019273	-	100	55.409	Canis_familiaris
ENSXMAG00000001397	tsr1	96	54.710	ENSCAFG00020009728	TSR1	99	54.142	Canis_lupus_dingo
ENSXMAG00000001397	tsr1	96	56.159	ENSCHIG00000023935	TSR1	99	55.396	Capra_hircus
ENSXMAG00000001397	tsr1	96	54.952	ENSTSYG00000005468	TSR1	99	54.337	Carlito_syrichta
ENSXMAG00000001397	tsr1	89	54.286	ENSCPOG00000014833	TSR1	99	54.734	Cavia_porcellus
ENSXMAG00000001397	tsr1	89	53.636	ENSCCAG00000028962	TSR1	98	53.316	Cebus_capucinus
ENSXMAG00000001397	tsr1	94	54.268	ENSCATG00000044262	TSR1	98	54.024	Cercocebus_atys
ENSXMAG00000001397	tsr1	96	55.381	ENSCLAG00000005567	TSR1	99	55.114	Chinchilla_lanigera
ENSXMAG00000001397	tsr1	94	54.390	ENSCSAG00000013788	TSR1	98	54.146	Chlorocebus_sabaeus
ENSXMAG00000001397	tsr1	95	54.866	ENSCPBG00000020363	TSR1	98	54.448	Chrysemys_picta_bellii
ENSXMAG00000001397	tsr1	93	45.387	ENSCING00000020658	-	99	44.485	Ciona_intestinalis
ENSXMAG00000001397	tsr1	93	44.417	ENSCSAVG00000001875	-	100	44.293	Ciona_savignyi
ENSXMAG00000001397	tsr1	94	52.015	ENSCANG00000033056	TSR1	98	51.035	Colobus_angolensis_palliatus
ENSXMAG00000001397	tsr1	96	53.865	ENSCGRG00001023942	Tsr1	99	53.670	Cricetulus_griseus_chok1gshd
ENSXMAG00000001397	tsr1	96	49.758	ENSCGRG00000013015	Tsr1	99	50.725	Cricetulus_griseus_crigri
ENSXMAG00000001397	tsr1	97	77.136	ENSCSEG00000013009	tsr1	100	77.885	Cynoglossus_semilaevis
ENSXMAG00000001397	tsr1	97	88.688	ENSCVAG00000000506	tsr1	100	88.568	Cyprinodon_variegatus
ENSXMAG00000001397	tsr1	97	72.837	ENSDARG00000007744	tsr1	99	73.341	Danio_rerio
ENSXMAG00000001397	tsr1	96	56.401	ENSDNOG00000004715	TSR1	99	56.615	Dasypus_novemcinctus
ENSXMAG00000001397	tsr1	93	48.436	ENSDORG00000023234	-	99	47.935	Dipodomys_ordii
ENSXMAG00000001397	tsr1	96	54.469	ENSDORG00000016371	-	99	54.106	Dipodomys_ordii
ENSXMAG00000001397	tsr1	93	43.827	FBgn0037073	Tsr1	96	43.457	Drosophila_melanogaster
ENSXMAG00000001397	tsr1	86	67.541	ENSETEG00000017534	TSR1	88	66.885	Echinops_telfairi
ENSXMAG00000001397	tsr1	91	51.511	ENSEBUG00000013731	TSR1	97	50.630	Eptatretus_burgeri
ENSXMAG00000001397	tsr1	96	55.623	ENSEASG00005009302	TSR1	97	55.260	Equus_asinus_asinus
ENSXMAG00000001397	tsr1	96	55.569	ENSECAG00000009114	TSR1	99	55.327	Equus_caballus
ENSXMAG00000001397	tsr1	99	73.126	ENSELUG00000020984	tsr1	99	73.095	Esox_lucius
ENSXMAG00000001397	tsr1	96	54.964	ENSFCAG00000006313	TSR1	99	54.162	Felis_catus
ENSXMAG00000001397	tsr1	96	58.384	ENSFALG00000006532	TSR1	99	57.623	Ficedula_albicollis
ENSXMAG00000001397	tsr1	96	54.843	ENSFDAG00000006038	TSR1	99	53.995	Fukomys_damarensis
ENSXMAG00000001397	tsr1	97	88.663	ENSFHEG00000003626	tsr1	100	89.141	Fundulus_heteroclitus
ENSXMAG00000001397	tsr1	97	72.368	ENSGMOG00000010336	tsr1	100	71.856	Gadus_morhua
ENSXMAG00000001397	tsr1	97	97.246	ENSGAFG00000012993	tsr1	100	97.246	Gambusia_affinis
ENSXMAG00000001397	tsr1	97	79.738	ENSGACG00000010843	tsr1	100	79.738	Gasterosteus_aculeatus
ENSXMAG00000001397	tsr1	95	54.866	ENSGAGG00000025619	-	99	55.181	Gopherus_agassizii
ENSXMAG00000001397	tsr1	96	54.327	ENSGGOG00000001704	TSR1	99	54.031	Gorilla_gorilla
ENSXMAG00000001397	tsr1	97	84.192	ENSHBUG00000017904	tsr1	100	83.871	Haplochromis_burtoni
ENSXMAG00000001397	tsr1	96	55.060	ENSHGLG00000012806	-	99	53.855	Heterocephalus_glaber_female
ENSXMAG00000001397	tsr1	93	48.375	ENSHGLG00000015688	-	99	47.940	Heterocephalus_glaber_female
ENSXMAG00000001397	tsr1	96	55.060	ENSHGLG00100015392	TSR1	99	53.855	Heterocephalus_glaber_male
ENSXMAG00000001397	tsr1	97	77.497	ENSHCOG00000001432	tsr1	100	77.136	Hippocampus_comes
ENSXMAG00000001397	tsr1	97	73.357	ENSIPUG00000004618	tsr1	100	72.999	Ictalurus_punctatus
ENSXMAG00000001397	tsr1	96	55.502	ENSSTOG00000011819	TSR1	99	54.699	Ictidomys_tridecemlineatus
ENSXMAG00000001397	tsr1	88	53.158	ENSJJAG00000019505	Tsr1	95	52.625	Jaculus_jaculus
ENSXMAG00000001397	tsr1	97	83.114	ENSKMAG00000005763	tsr1	100	83.333	Kryptolebias_marmoratus
ENSXMAG00000001397	tsr1	97	82.458	ENSLBEG00000021823	tsr1	100	81.742	Labrus_bergylta
ENSXMAG00000001397	tsr1	97	57.533	ENSLACG00000002197	TSR1	100	56.940	Latimeria_chalumnae
ENSXMAG00000001397	tsr1	88	75.000	ENSLOCG00000006491	TSR1	98	75.000	Lepisosteus_oculatus
ENSXMAG00000001397	tsr1	94	54.512	ENSMFAG00000021330	TSR1	98	54.268	Macaca_fascicularis
ENSXMAG00000001397	tsr1	94	54.390	ENSMMUG00000017519	TSR1	98	54.457	Macaca_mulatta
ENSXMAG00000001397	tsr1	94	54.512	ENSMNEG00000031382	TSR1	98	54.268	Macaca_nemestrina
ENSXMAG00000001397	tsr1	94	54.268	ENSMLEG00000036733	TSR1	98	54.024	Mandrillus_leucophaeus
ENSXMAG00000001397	tsr1	97	82.423	ENSMAMG00000017918	tsr1	100	82.562	Mastacembelus_armatus
ENSXMAG00000001397	tsr1	97	83.933	ENSMZEG00005007477	tsr1	100	83.453	Maylandia_zebra
ENSXMAG00000001397	tsr1	96	57.057	ENSMGAG00000005576	TSR1	99	55.971	Meleagris_gallopavo
ENSXMAG00000001397	tsr1	96	55.811	ENSMICG00000012943	TSR1	99	54.524	Microcebus_murinus
ENSXMAG00000001397	tsr1	96	53.865	ENSMOCG00000022764	Tsr1	99	53.019	Microtus_ochrogaster
ENSXMAG00000001397	tsr1	97	82.452	ENSMMOG00000014280	tsr1	100	82.452	Mola_mola
ENSXMAG00000001397	tsr1	95	56.273	ENSMODG00000010658	TSR1	99	55.947	Monodelphis_domestica
ENSXMAG00000001397	tsr1	97	82.614	ENSMALG00000011681	tsr1	100	83.234	Monopterus_albus
ENSXMAG00000001397	tsr1	96	54.293	MGP_CAROLIEiJ_G0016727	Tsr1	99	53.373	Mus_caroli
ENSXMAG00000001397	tsr1	96	54.897	ENSMUSG00000038335	Tsr1	99	53.976	Mus_musculus
ENSXMAG00000001397	tsr1	96	55.260	MGP_PahariEiJ_G0017864	Tsr1	99	54.337	Mus_pahari
ENSXMAG00000001397	tsr1	96	55.018	MGP_SPRETEiJ_G0017570	Tsr1	99	54.096	Mus_spretus
ENSXMAG00000001397	tsr1	78	56.490	ENSMPUG00000013000	TSR1	100	56.112	Mustela_putorius_furo
ENSXMAG00000001397	tsr1	95	56.311	ENSMLUG00000003505	TSR1	99	56.068	Myotis_lucifugus
ENSXMAG00000001397	tsr1	97	83.971	ENSNBRG00000020728	tsr1	100	83.493	Neolamprologus_brichardi
ENSXMAG00000001397	tsr1	96	51.691	ENSNLEG00000017184	TSR1	99	51.449	Nomascus_leucogenys
ENSXMAG00000001397	tsr1	96	51.737	ENSMEUG00000015828	TSR1	99	51.555	Notamacropus_eugenii
ENSXMAG00000001397	tsr1	97	83.473	ENSONIG00000013131	tsr1	100	82.444	Oreochromis_niloticus
ENSXMAG00000001397	tsr1	92	50.936	ENSOANG00000008637	TSR1	100	52.099	Ornithorhynchus_anatinus
ENSXMAG00000001397	tsr1	95	55.273	ENSOCUG00000014256	TSR1	99	55.193	Oryctolagus_cuniculus
ENSXMAG00000001397	tsr1	97	81.677	ENSORLG00000004926	tsr1	100	81.796	Oryzias_latipes
ENSXMAG00000001397	tsr1	97	81.677	ENSORLG00020008792	tsr1	100	81.796	Oryzias_latipes_hni
ENSXMAG00000001397	tsr1	97	81.916	ENSORLG00015013838	tsr1	100	82.036	Oryzias_latipes_hsok
ENSXMAG00000001397	tsr1	97	82.057	ENSOMEG00000004830	tsr1	100	82.416	Oryzias_melastigma
ENSXMAG00000001397	tsr1	96	54.132	ENSOGAG00000004492	TSR1	99	53.938	Otolemur_garnettii
ENSXMAG00000001397	tsr1	96	56.106	ENSOARG00000015437	TSR1	97	54.940	Ovis_aries
ENSXMAG00000001397	tsr1	96	54.327	ENSPPAG00000036355	TSR1	99	54.031	Pan_paniscus
ENSXMAG00000001397	tsr1	96	54.722	ENSPPRG00000015519	-	99	54.031	Panthera_pardus
ENSXMAG00000001397	tsr1	96	54.722	ENSPTIG00000010608	TSR1	99	54.031	Panthera_tigris_altaica
ENSXMAG00000001397	tsr1	96	54.327	ENSPTRG00000008547	TSR1	99	54.031	Pan_troglodytes
ENSXMAG00000001397	tsr1	94	51.648	ENSPANG00000024463	TSR1	98	52.137	Papio_anubis
ENSXMAG00000001397	tsr1	97	71.343	ENSPKIG00000013972	tsr1	100	71.103	Paramormyrops_kingsleyae
ENSXMAG00000001397	tsr1	84	55.923	ENSPSIG00000018258	TSR1	99	55.281	Pelodiscus_sinensis
ENSXMAG00000001397	tsr1	97	79.131	ENSPMGG00000011577	tsr1	99	78.528	Periophthalmus_magnuspinnatus
ENSXMAG00000001397	tsr1	96	53.567	ENSPEMG00000018033	Tsr1	99	52.892	Peromyscus_maniculatus_bairdii
ENSXMAG00000001397	tsr1	96	55.144	ENSPCIG00000009357	TSR1	97	55.066	Phascolarctos_cinereus
ENSXMAG00000001397	tsr1	97	91.966	ENSPFOG00000004483	TSR1	100	92.566	Poecilia_formosa
ENSXMAG00000001397	tsr1	97	93.325	ENSPLAG00000022320	tsr1	100	94.756	Poecilia_latipinna
ENSXMAG00000001397	tsr1	97	95.833	ENSPMEG00000004577	tsr1	100	95.833	Poecilia_mexicana
ENSXMAG00000001397	tsr1	94	95.460	ENSPREG00000010354	tsr1	99	92.842	Poecilia_reticulata
ENSXMAG00000001397	tsr1	96	49.940	ENSPPYG00000007792	TSR1	99	49.760	Pongo_abelii
ENSXMAG00000001397	tsr1	50	60.465	ENSPCAG00000012973	-	70	66.667	Procavia_capensis
ENSXMAG00000001397	tsr1	96	55.515	ENSPCOG00000017928	TSR1	99	54.699	Propithecus_coquereli
ENSXMAG00000001397	tsr1	96	54.655	ENSPVAG00000002162	TSR1	99	54.578	Pteropus_vampyrus
ENSXMAG00000001397	tsr1	97	84.072	ENSPNYG00000016163	tsr1	100	83.473	Pundamilia_nyererei
ENSXMAG00000001397	tsr1	97	73.508	ENSPNAG00000008659	tsr1	99	74.224	Pygocentrus_nattereri
ENSXMAG00000001397	tsr1	96	54.106	ENSRNOG00000002980	Tsr1	99	53.670	Rattus_norvegicus
ENSXMAG00000001397	tsr1	96	54.152	ENSRBIG00000040016	TSR1	99	53.892	Rhinopithecus_bieti
ENSXMAG00000001397	tsr1	96	54.031	ENSRROG00000030361	TSR1	99	53.772	Rhinopithecus_roxellana
ENSXMAG00000001397	tsr1	96	54.096	ENSSBOG00000020785	TSR1	99	54.202	Saimiri_boliviensis_boliviensis
ENSXMAG00000001397	tsr1	96	55.755	ENSSHAG00000011394	TSR1	99	55.516	Sarcophilus_harrisii
ENSXMAG00000001397	tsr1	97	72.716	ENSSFOG00015005455	tsr1	100	72.323	Scleropages_formosus
ENSXMAG00000001397	tsr1	97	80.336	ENSSMAG00000009504	tsr1	100	81.055	Scophthalmus_maximus
ENSXMAG00000001397	tsr1	97	83.771	ENSSDUG00000012074	tsr1	100	83.652	Seriola_dumerili
ENSXMAG00000001397	tsr1	97	83.971	ENSSLDG00000002031	tsr1	100	84.091	Seriola_lalandi_dorsalis
ENSXMAG00000001397	tsr1	89	56.000	ENSSARG00000000759	TSR1	93	56.000	Sorex_araneus
ENSXMAG00000001397	tsr1	96	56.318	ENSSPUG00000007042	TSR1	99	55.635	Sphenodon_punctatus
ENSXMAG00000001397	tsr1	97	84.010	ENSSPAG00000021951	tsr1	100	84.606	Stegastes_partitus
ENSXMAG00000001397	tsr1	96	55.381	ENSSSCG00000038534	TSR1	99	54.862	Sus_scrofa
ENSXMAG00000001397	tsr1	87	59.973	ENSTGUG00000005883	TSR1	100	59.761	Taeniopygia_guttata
ENSXMAG00000001397	tsr1	97	80.866	ENSTRUG00000004665	tsr1	100	81.709	Takifugu_rubripes
ENSXMAG00000001397	tsr1	96	81.189	ENSTNIG00000016196	tsr1	100	81.189	Tetraodon_nigroviridis
ENSXMAG00000001397	tsr1	64	68.462	ENSTBEG00000015275	-	66	68.462	Tupaia_belangeri
ENSXMAG00000001397	tsr1	96	55.985	ENSTTRG00000001177	TSR1	99	55.342	Tursiops_truncatus
ENSXMAG00000001397	tsr1	97	53.993	ENSUAMG00000025160	TSR1	99	53.911	Ursus_americanus
ENSXMAG00000001397	tsr1	92	54.568	ENSUMAG00000009294	TSR1	98	53.731	Ursus_maritimus
ENSXMAG00000001397	tsr1	80	50.431	ENSVPAG00000000228	TSR1	99	49.499	Vicugna_pacos
ENSXMAG00000001397	tsr1	96	54.831	ENSVVUG00000021767	TSR1	99	54.262	Vulpes_vulpes
ENSXMAG00000001397	tsr1	97	52.732	ENSXETG00000023797	tsr1	100	52.133	Xenopus_tropicalis
ENSXMAG00000001397	tsr1	97	97.476	ENSXCOG00000009635	tsr1	100	97.476	Xiphophorus_couchianus