EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000001521 (Gene tree)
Gene ID: 102216861
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 5241 bases
Position: chr12:21914251-21919491
Accession: 102216861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000037183	SMN	PF06003.12	7.3e-114	1	1
ENSXMAP00000001532	SMN	PF06003.12	1.2e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000026154	-	1321	XM_005808506	ENSXMAP00000037183	283 (aa)	XP_005808563	UPI0003B4236D
ENSXMAT00000001535	-	774	-	ENSXMAP00000001532	257 (aa)	-	M3ZH40

Gene Model

Click here to download ENSXMAG00000001521's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000001521's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000001521	smn1	94	55.967	ENSG00000172062	SMN1	91	55.738	Homo_sapiens
ENSXMAG00000001521	smn1	94	55.967	ENSG00000205571	SMN2	83	68.421	Homo_sapiens
ENSXMAG00000001521	smn1	100	81.625	ENSAPOG00000011324	smn1	100	81.625	Acanthochromis_polyacanthus
ENSXMAG00000001521	smn1	95	52.330	ENSAMEG00000003316	-	90	53.047	Ailuropoda_melanoleuca
ENSXMAG00000001521	smn1	65	79.167	ENSACIG00000007598	smn1	93	79.762	Amphilophus_citrinellus
ENSXMAG00000001521	smn1	93	75.665	ENSACIG00000019772	-	99	75.665	Amphilophus_citrinellus
ENSXMAG00000001521	smn1	100	81.625	ENSAOCG00000024444	smn1	100	81.625	Amphiprion_ocellaris
ENSXMAG00000001521	smn1	100	81.625	ENSAPEG00000016504	smn1	100	81.625	Amphiprion_percula
ENSXMAG00000001521	smn1	95	81.852	ENSATEG00000002182	smn1	82	81.852	Anabas_testudineus
ENSXMAG00000001521	smn1	69	42.661	ENSAPLG00000010912	-	96	48.768	Anas_platyrhynchos
ENSXMAG00000001521	smn1	98	52.788	ENSACAG00000010017	-	96	52.281	Anolis_carolinensis
ENSXMAG00000001521	smn1	95	51.254	ENSANAG00000032133	-	92	52.313	Aotus_nancymaae
ENSXMAG00000001521	smn1	98	78.261	ENSACLG00000007308	smn1	92	78.623	Astatotilapia_calliptera
ENSXMAG00000001521	smn1	100	64.437	ENSAMXG00000013884	smn1	100	64.789	Astyanax_mexicanus
ENSXMAG00000001521	smn1	95	51.439	ENSBTAG00000005743	SMN2	94	52.688	Bos_taurus
ENSXMAG00000001521	smn1	94	57.202	ENSCJAG00000016290	-	91	56.967	Callithrix_jacchus
ENSXMAG00000001521	smn1	95	51.825	ENSCAFG00000007812	SMN	93	53.025	Canis_familiaris
ENSXMAG00000001521	smn1	95	51.825	ENSCAFG00020019229	-	87	53.025	Canis_lupus_dingo
ENSXMAG00000001521	smn1	95	51.439	ENSCHIG00000015559	-	92	52.313	Capra_hircus
ENSXMAG00000001521	smn1	95	56.148	ENSTSYG00000012058	-	93	56.148	Carlito_syrichta
ENSXMAG00000001521	smn1	73	45.411	ENSCAPG00000011021	-	88	44.330	Cavia_aperea
ENSXMAG00000001521	smn1	94	50.538	ENSCPOG00000012328	-	93	51.930	Cavia_porcellus
ENSXMAG00000001521	smn1	94	51.095	ENSCPOG00000036973	-	92	52.143	Cavia_porcellus
ENSXMAG00000001521	smn1	95	56.557	ENSCCAG00000018127	-	91	56.557	Cebus_capucinus
ENSXMAG00000001521	smn1	94	55.967	ENSCATG00000037002	-	91	55.738	Cercocebus_atys
ENSXMAG00000001521	smn1	94	51.264	ENSCLAG00000000284	-	91	54.365	Chinchilla_lanigera
ENSXMAG00000001521	smn1	95	51.648	ENSCSAG00000015688	-	92	52.920	Chlorocebus_sabaeus
ENSXMAG00000001521	smn1	67	80.000	ENSCHOG00000007346	-	100	49.004	Choloepus_hoffmanni
ENSXMAG00000001521	smn1	95	52.190	ENSCPBG00000010968	-	96	53.200	Chrysemys_picta_bellii
ENSXMAG00000001521	smn1	94	56.379	ENSCANG00000038242	-	94	53.759	Colobus_angolensis_palliatus
ENSXMAG00000001521	smn1	95	51.837	ENSCANG00000033324	-	91	50.820	Colobus_angolensis_palliatus
ENSXMAG00000001521	smn1	95	41.481	ENSCGRG00001016998	-	92	38.989	Cricetulus_griseus_chok1gshd
ENSXMAG00000001521	smn1	95	53.137	ENSCGRG00001017959	-	93	52.158	Cricetulus_griseus_chok1gshd
ENSXMAG00000001521	smn1	95	53.137	ENSCGRG00000007698	Smn1	93	52.158	Cricetulus_griseus_crigri
ENSXMAG00000001521	smn1	97	64.211	ENSCSEG00000015227	smn1	99	64.561	Cynoglossus_semilaevis
ENSXMAG00000001521	smn1	100	89.437	ENSCVAG00000007498	smn1	100	89.437	Cyprinodon_variegatus
ENSXMAG00000001521	smn1	100	65.278	ENSDARG00000018494	smn1	100	63.542	Danio_rerio
ENSXMAG00000001521	smn1	82	47.325	ENSDNOG00000007283	-	97	47.521	Dasypus_novemcinctus
ENSXMAG00000001521	smn1	82	42.489	ENSDNOG00000045949	-	68	51.553	Dasypus_novemcinctus
ENSXMAG00000001521	smn1	92	45.420	ENSDORG00000007082	Smn1	91	45.018	Dipodomys_ordii
ENSXMAG00000001521	smn1	59	51.923	ENSETEG00000001406	-	77	50.000	Echinops_telfairi
ENSXMAG00000001521	smn1	96	39.510	ENSEBUG00000011902	smn1	96	41.901	Eptatretus_burgeri
ENSXMAG00000001521	smn1	89	46.332	ENSEASG00005018000	-	89	47.692	Equus_asinus_asinus
ENSXMAG00000001521	smn1	95	51.087	ENSECAG00000015215	-	93	52.158	Equus_caballus
ENSXMAG00000001521	smn1	88	53.077	ENSEEUG00000015777	-	100	49.421	Erinaceus_europaeus
ENSXMAG00000001521	smn1	97	68.613	ENSELUG00000018067	smn1	100	67.138	Esox_lucius
ENSXMAG00000001521	smn1	94	54.321	ENSFCAG00000028292	SMN	93	54.098	Felis_catus
ENSXMAG00000001521	smn1	95	56.159	ENSFALG00000012320	-	95	52.256	Ficedula_albicollis
ENSXMAG00000001521	smn1	95	47.703	ENSFDAG00000017683	-	93	49.655	Fukomys_damarensis
ENSXMAG00000001521	smn1	97	88.406	ENSFHEG00000018508	smn1	100	88.406	Fundulus_heteroclitus
ENSXMAG00000001521	smn1	100	65.724	ENSGMOG00000017279	smn1	98	64.311	Gadus_morhua
ENSXMAG00000001521	smn1	94	56.667	ENSGALG00000002430	SMN	95	55.556	Gallus_gallus
ENSXMAG00000001521	smn1	100	97.276	ENSGAFG00000009501	smn1	100	97.276	Gambusia_affinis
ENSXMAG00000001521	smn1	100	79.859	ENSGACG00000010584	smn1	97	78.445	Gasterosteus_aculeatus
ENSXMAG00000001521	smn1	97	35.714	ENSGAGG00000013639	-	95	40.541	Gopherus_agassizii
ENSXMAG00000001521	smn1	96	53.069	ENSGAGG00000011374	-	95	56.835	Gopherus_agassizii
ENSXMAG00000001521	smn1	60	59.375	ENSGGOG00000026704	-	75	60.000	Gorilla_gorilla
ENSXMAG00000001521	smn1	91	56.170	ENSGGOG00000003872	-	93	56.170	Gorilla_gorilla
ENSXMAG00000001521	smn1	100	79.505	ENSHBUG00000013987	smn1	100	79.859	Haplochromis_burtoni
ENSXMAG00000001521	smn1	95	50.000	ENSHGLG00000001018	-	93	51.943	Heterocephalus_glaber_female
ENSXMAG00000001521	smn1	95	46.863	ENSHGLG00000001905	-	94	51.095	Heterocephalus_glaber_female
ENSXMAG00000001521	smn1	95	50.000	ENSHGLG00100011252	-	93	51.943	Heterocephalus_glaber_male
ENSXMAG00000001521	smn1	93	46.691	ENSHGLG00100018676	-	96	51.119	Heterocephalus_glaber_male
ENSXMAG00000001521	smn1	94	73.208	ENSHCOG00000017136	smn1	89	72.075	Hippocampus_comes
ENSXMAG00000001521	smn1	100	65.972	ENSIPUG00000012580	smn1	89	65.625	Ictalurus_punctatus
ENSXMAG00000001521	smn1	92	51.119	ENSSTOG00000012288	-	94	52.434	Ictidomys_tridecemlineatus
ENSXMAG00000001521	smn1	56	51.049	ENSJJAG00000014853	-	86	50.000	Jaculus_jaculus
ENSXMAG00000001521	smn1	100	79.371	ENSKMAG00000007239	smn1	100	79.371	Kryptolebias_marmoratus
ENSXMAG00000001521	smn1	100	80.986	ENSLBEG00000022550	smn1	100	80.986	Labrus_bergylta
ENSXMAG00000001521	smn1	95	36.301	ENSLACG00000009808	-	94	36.082	Latimeria_chalumnae
ENSXMAG00000001521	smn1	100	55.474	ENSLOCG00000011339	smn1	100	59.316	Lepisosteus_oculatus
ENSXMAG00000001521	smn1	98	31.293	ENSLOCG00000000801	-	94	31.317	Lepisosteus_oculatus
ENSXMAG00000001521	smn1	95	51.079	ENSLAFG00000003425	-	99	46.000	Loxodonta_africana
ENSXMAG00000001521	smn1	95	48.718	ENSMFAG00000008812	-	92	50.000	Macaca_fascicularis
ENSXMAG00000001521	smn1	94	56.790	ENSMFAG00000031523	SMN1	91	56.557	Macaca_fascicularis
ENSXMAG00000001521	smn1	95	47.985	ENSMMUG00000030594	-	92	49.281	Macaca_mulatta
ENSXMAG00000001521	smn1	94	56.790	ENSMMUG00000020214	SMN1	91	56.557	Macaca_mulatta
ENSXMAG00000001521	smn1	76	39.367	ENSMNEG00000036423	-	81	40.930	Macaca_nemestrina
ENSXMAG00000001521	smn1	94	56.790	ENSMNEG00000035094	-	91	56.557	Macaca_nemestrina
ENSXMAG00000001521	smn1	94	56.790	ENSMLEG00000041902	-	92	56.557	Mandrillus_leucophaeus
ENSXMAG00000001521	smn1	100	79.577	ENSMAMG00000011034	smn1	100	79.577	Mastacembelus_armatus
ENSXMAG00000001521	smn1	100	79.859	ENSMZEG00005013634	smn1	100	80.212	Maylandia_zebra
ENSXMAG00000001521	smn1	69	50.505	ENSMGAG00000008889	-	94	49.171	Meleagris_gallopavo
ENSXMAG00000001521	smn1	95	52.899	ENSMAUG00000010262	Smn1	93	52.143	Mesocricetus_auratus
ENSXMAG00000001521	smn1	60	60.000	ENSMICG00000034708	-	72	60.000	Microcebus_murinus
ENSXMAG00000001521	smn1	95	53.114	ENSMOCG00000017833	Smn1	93	52.920	Microtus_ochrogaster
ENSXMAG00000001521	smn1	96	71.103	ENSMMOG00000005504	smn1	97	74.330	Mola_mola
ENSXMAG00000001521	smn1	95	53.025	ENSMODG00000001436	-	92	56.364	Monodelphis_domestica
ENSXMAG00000001521	smn1	100	80.986	ENSMALG00000008025	smn1	100	80.986	Monopterus_albus
ENSXMAG00000001521	smn1	95	50.896	MGP_CAROLIEiJ_G0018836	Smn1	93	51.971	Mus_caroli
ENSXMAG00000001521	smn1	95	50.538	ENSMUSG00000021645	Smn1	93	51.636	Mus_musculus
ENSXMAG00000001521	smn1	95	52.574	MGP_PahariEiJ_G0015911	Smn1	93	54.182	Mus_pahari
ENSXMAG00000001521	smn1	95	51.254	MGP_SPRETEiJ_G0019718	Smn1	93	51.273	Mus_spretus
ENSXMAG00000001521	smn1	93	52.555	ENSMPUG00000014470	-	94	53.480	Mustela_putorius_furo
ENSXMAG00000001521	smn1	95	51.786	ENSMLUG00000010603	-	89	51.056	Myotis_lucifugus
ENSXMAG00000001521	smn1	95	51.460	ENSNGAG00000019833	Smn1	93	52.500	Nannospalax_galili
ENSXMAG00000001521	smn1	100	81.272	ENSNBRG00000023000	smn1	100	81.272	Neolamprologus_brichardi
ENSXMAG00000001521	smn1	95	56.148	ENSNLEG00000004454	-	91	56.148	Nomascus_leucogenys
ENSXMAG00000001521	smn1	80	47.619	ENSMEUG00000011393	-	100	45.259	Notamacropus_eugenii
ENSXMAG00000001521	smn1	88	47.328	ENSOPRG00000002015	-	100	53.053	Ochotona_princeps
ENSXMAG00000001521	smn1	90	51.538	ENSODEG00000015976	-	91	51.154	Octodon_degus
ENSXMAG00000001521	smn1	100	81.625	ENSONIG00000011799	smn1	100	81.625	Oreochromis_niloticus
ENSXMAG00000001521	smn1	94	47.445	ENSOANG00000001626	-	95	53.261	Ornithorhynchus_anatinus
ENSXMAG00000001521	smn1	95	52.158	ENSOCUG00000026649	-	93	49.455	Oryctolagus_cuniculus
ENSXMAG00000001521	smn1	95	52.381	ENSOCUG00000017097	-	92	50.000	Oryctolagus_cuniculus
ENSXMAG00000001521	smn1	95	41.637	ENSOCUG00000025183	-	93	42.657	Oryctolagus_cuniculus
ENSXMAG00000001521	smn1	100	79.859	ENSORLG00000010552	smn1	100	79.859	Oryzias_latipes
ENSXMAG00000001521	smn1	100	81.081	ENSORLG00020007936	smn1	100	81.081	Oryzias_latipes_hni
ENSXMAG00000001521	smn1	100	79.859	ENSORLG00015022425	smn1	100	79.859	Oryzias_latipes_hsok
ENSXMAG00000001521	smn1	100	80.212	ENSOMEG00000007824	smn1	100	80.212	Oryzias_melastigma
ENSXMAG00000001521	smn1	92	48.148	ENSOGAG00000031414	-	92	47.101	Otolemur_garnettii
ENSXMAG00000001521	smn1	94	50.182	ENSOARG00000005425	-	97	51.449	Ovis_aries
ENSXMAG00000001521	smn1	94	55.556	ENSPPAG00000036640	-	91	55.328	Pan_paniscus
ENSXMAG00000001521	smn1	95	54.508	ENSPPRG00000005575	-	93	54.508	Panthera_pardus
ENSXMAG00000001521	smn1	95	54.508	ENSPTIG00000007745	-	93	54.508	Panthera_tigris_altaica
ENSXMAG00000001521	smn1	94	55.967	ENSPTRG00000016955	-	91	55.738	Pan_troglodytes
ENSXMAG00000001521	smn1	95	49.270	ENSPANG00000000253	-	92	51.004	Papio_anubis
ENSXMAG00000001521	smn1	95	56.557	ENSPANG00000013601	-	91	56.557	Papio_anubis
ENSXMAG00000001521	smn1	100	60.153	ENSPKIG00000011096	smn1	100	59.770	Paramormyrops_kingsleyae
ENSXMAG00000001521	smn1	92	52.015	ENSPSIG00000014787	-	83	55.378	Pelodiscus_sinensis
ENSXMAG00000001521	smn1	100	66.431	ENSPMGG00000012285	smn1	100	67.138	Periophthalmus_magnuspinnatus
ENSXMAG00000001521	smn1	92	40.659	ENSPMAG00000005004	smn1	89	40.377	Petromyzon_marinus
ENSXMAG00000001521	smn1	95	52.313	ENSPCIG00000025764	-	94	54.909	Phascolarctos_cinereus
ENSXMAG00000001521	smn1	100	96.820	ENSPFOG00000007786	smn1	100	96.820	Poecilia_formosa
ENSXMAG00000001521	smn1	100	97.276	ENSPLAG00000012071	smn1	100	97.276	Poecilia_latipinna
ENSXMAG00000001521	smn1	100	96.887	ENSPMEG00000017085	smn1	100	96.887	Poecilia_mexicana
ENSXMAG00000001521	smn1	100	96.887	ENSPREG00000005824	smn1	100	96.887	Poecilia_reticulata
ENSXMAG00000001521	smn1	92	50.000	ENSPPYG00000015533	-	95	51.515	Pongo_abelii
ENSXMAG00000001521	smn1	88	40.562	ENSPPYG00000019189	-	99	40.359	Pongo_abelii
ENSXMAG00000001521	smn1	91	51.866	ENSPCAG00000004187	-	97	51.111	Procavia_capensis
ENSXMAG00000001521	smn1	70	50.829	ENSPCOG00000022307	-	65	59.028	Propithecus_coquereli
ENSXMAG00000001521	smn1	95	53.818	ENSPVAG00000005977	-	92	54.480	Pteropus_vampyrus
ENSXMAG00000001521	smn1	100	81.272	ENSPNYG00000014148	smn1	100	81.272	Pundamilia_nyererei
ENSXMAG00000001521	smn1	100	64.561	ENSPNAG00000014007	smn1	87	65.965	Pygocentrus_nattereri
ENSXMAG00000001521	smn1	96	51.246	ENSRNOG00000018067	Smn1	94	52.347	Rattus_norvegicus
ENSXMAG00000001521	smn1	94	56.379	ENSRBIG00000037052	-	91	56.148	Rhinopithecus_bieti
ENSXMAG00000001521	smn1	92	49.808	ENSRBIG00000036775	-	89	50.612	Rhinopithecus_bieti
ENSXMAG00000001521	smn1	95	50.781	ENSRROG00000031088	-	91	50.638	Rhinopithecus_roxellana
ENSXMAG00000001521	smn1	94	56.379	ENSRROG00000039399	-	91	56.148	Rhinopithecus_roxellana
ENSXMAG00000001521	smn1	94	57.613	ENSSBOG00000011665	-	91	57.377	Saimiri_boliviensis_boliviensis
ENSXMAG00000001521	smn1	56	58.000	ENSSBOG00000020112	-	87	46.800	Saimiri_boliviensis_boliviensis
ENSXMAG00000001521	smn1	95	53.025	ENSSHAG00000001499	-	98	53.114	Sarcophilus_harrisii
ENSXMAG00000001521	smn1	100	60.687	ENSSFOG00015015507	smn1	100	60.687	Scleropages_formosus
ENSXMAG00000001521	smn1	100	78.092	ENSSMAG00000007922	smn1	100	78.092	Scophthalmus_maximus
ENSXMAG00000001521	smn1	100	84.859	ENSSDUG00000018533	smn1	100	84.859	Seriola_dumerili
ENSXMAG00000001521	smn1	100	85.211	ENSSLDG00000021135	smn1	100	85.211	Seriola_lalandi_dorsalis
ENSXMAG00000001521	smn1	96	55.160	ENSSPUG00000000373	-	98	54.015	Sphenodon_punctatus
ENSXMAG00000001521	smn1	100	80.919	ENSSPAG00000004345	smn1	100	80.919	Stegastes_partitus
ENSXMAG00000001521	smn1	95	52.174	ENSSSCG00000016970	-	92	53.004	Sus_scrofa
ENSXMAG00000001521	smn1	95	42.023	ENSSSCG00000029127	-	92	45.082	Sus_scrofa
ENSXMAG00000001521	smn1	92	51.636	ENSTGUG00000001548	-	96	48.519	Taeniopygia_guttata
ENSXMAG00000001521	smn1	100	65.371	ENSTRUG00000000736	smn	100	67.845	Takifugu_rubripes
ENSXMAG00000001521	smn1	100	65.517	ENSTNIG00000009892	smn1	100	67.241	Tetraodon_nigroviridis
ENSXMAG00000001521	smn1	60	61.006	ENSTBEG00000002399	-	77	61.635	Tupaia_belangeri
ENSXMAG00000001521	smn1	59	59.615	ENSTTRG00000005080	-	91	53.986	Tursiops_truncatus
ENSXMAG00000001521	smn1	60	60.759	ENSUAMG00000024947	-	58	61.392	Ursus_americanus
ENSXMAG00000001521	smn1	95	53.047	ENSUMAG00000007842	-	70	53.763	Ursus_maritimus
ENSXMAG00000001521	smn1	61	77.778	ENSVPAG00000009887	-	56	82.609	Vicugna_pacos
ENSXMAG00000001521	smn1	95	51.825	ENSVVUG00000006934	-	93	53.025	Vulpes_vulpes
ENSXMAG00000001521	smn1	51	40.000	ENSXETG00000004912	-	78	62.069	Xenopus_tropicalis
ENSXMAG00000001521	smn1	95	56.318	ENSXETG00000018189	smn2	95	53.986	Xenopus_tropicalis