EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000001559 (Gene tree)
Gene ID: 102233334
Gene Symbol: polr2f
Alias: zgc:92790
Full Name: RNA polymerase II subunit F
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 1726 bases
Position: chr16:19588011-19589736
Accession: 102233334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000001581	RNA_pol_Rpb6	PF01192.22	1.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000001584	-	384	XM_005803333	ENSXMAP00000001581	127 (aa)	XP_005803390	M3ZH89

Gene Model

Click here to download ENSXMAG00000001559's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03020	RNA polymerase	KEGG
xma04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000001559's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000001559	polr2f	100	88.189	ENSG00000100142	POLR2F	100	88.189	Homo_sapiens
ENSXMAG00000001559	polr2f	100	97.638	ENSAPOG00000002902	polr2f	100	97.638	Acanthochromis_polyacanthus
ENSXMAG00000001559	polr2f	100	87.402	ENSAMEG00000010331	POLR2F	100	87.402	Ailuropoda_melanoleuca
ENSXMAG00000001559	polr2f	100	97.638	ENSACIG00000000923	polr2f	100	97.638	Amphilophus_citrinellus
ENSXMAG00000001559	polr2f	100	98.425	ENSAOCG00000003182	polr2f	100	98.425	Amphiprion_ocellaris
ENSXMAG00000001559	polr2f	100	98.425	ENSAPEG00000012999	polr2f	100	98.425	Amphiprion_percula
ENSXMAG00000001559	polr2f	100	97.638	ENSATEG00000008929	polr2f	100	97.638	Anabas_testudineus
ENSXMAG00000001559	polr2f	80	89.109	ENSAPLG00000015235	POLR2F	100	84.000	Anas_platyrhynchos
ENSXMAG00000001559	polr2f	100	88.976	ENSACAG00000015288	POLR2F	100	88.976	Anolis_carolinensis
ENSXMAG00000001559	polr2f	100	88.189	ENSANAG00000020840	POLR2F	100	88.189	Aotus_nancymaae
ENSXMAG00000001559	polr2f	100	96.850	ENSACLG00000016129	polr2f	100	96.850	Astatotilapia_calliptera
ENSXMAG00000001559	polr2f	100	96.850	ENSAMXG00000012812	polr2f	100	96.850	Astyanax_mexicanus
ENSXMAG00000001559	polr2f	100	88.189	ENSBTAG00000004820	POLR2F	100	88.189	Bos_taurus
ENSXMAG00000001559	polr2f	63	77.500	WBGene00007355	rpb-6	92	60.630	Caenorhabditis_elegans
ENSXMAG00000001559	polr2f	100	88.189	ENSCJAG00000048241	POLR2F	100	88.189	Callithrix_jacchus
ENSXMAG00000001559	polr2f	100	87.402	ENSCAFG00000001437	POLR2F	100	87.402	Canis_familiaris
ENSXMAG00000001559	polr2f	83	89.623	ENSCHIG00000012907	POLR2F	95	86.777	Capra_hircus
ENSXMAG00000001559	polr2f	100	87.402	ENSTSYG00000008187	POLR2F	100	87.402	Carlito_syrichta
ENSXMAG00000001559	polr2f	83	89.623	ENSCAPG00000013419	POLR2F	94	87.500	Cavia_aperea
ENSXMAG00000001559	polr2f	100	88.189	ENSCPOG00000034094	POLR2F	100	88.189	Cavia_porcellus
ENSXMAG00000001559	polr2f	100	88.189	ENSCCAG00000036489	POLR2F	100	88.189	Cebus_capucinus
ENSXMAG00000001559	polr2f	100	88.189	ENSCATG00000041014	POLR2F	100	88.189	Cercocebus_atys
ENSXMAG00000001559	polr2f	100	88.189	ENSCLAG00000017167	POLR2F	100	88.189	Chinchilla_lanigera
ENSXMAG00000001559	polr2f	100	88.189	ENSCSAG00000006862	POLR2F	100	88.189	Chlorocebus_sabaeus
ENSXMAG00000001559	polr2f	83	90.566	ENSCPBG00000023030	POLR2F	62	87.603	Chrysemys_picta_bellii
ENSXMAG00000001559	polr2f	81	75.962	ENSCING00000019359	-	90	69.531	Ciona_intestinalis
ENSXMAG00000001559	polr2f	100	88.189	ENSCANG00000041884	POLR2F	100	88.189	Colobus_angolensis_palliatus
ENSXMAG00000001559	polr2f	100	88.189	ENSCGRG00001023541	POLR2F	100	88.189	Cricetulus_griseus_chok1gshd
ENSXMAG00000001559	polr2f	100	88.189	ENSCGRG00000011921	POLR2F	100	88.189	Cricetulus_griseus_crigri
ENSXMAG00000001559	polr2f	95	97.521	ENSCSEG00000006848	polr2f	95	97.521	Cynoglossus_semilaevis
ENSXMAG00000001559	polr2f	100	100.000	ENSCVAG00000010437	polr2f	100	100.000	Cyprinodon_variegatus
ENSXMAG00000001559	polr2f	100	94.488	ENSDARG00000036625	polr2f	100	94.488	Danio_rerio
ENSXMAG00000001559	polr2f	100	88.189	ENSDNOG00000005884	POLR2F	100	88.189	Dasypus_novemcinctus
ENSXMAG00000001559	polr2f	100	88.189	ENSDORG00000024789	Polr2f	100	88.189	Dipodomys_ordii
ENSXMAG00000001559	polr2f	78	70.588	FBgn0003275	RpII18	98	64.062	Drosophila_melanogaster
ENSXMAG00000001559	polr2f	54	85.294	ENSEBUG00000008509	polr2f	70	85.294	Eptatretus_burgeri
ENSXMAG00000001559	polr2f	77	68.367	ENSEBUG00000002842	-	90	65.385	Eptatretus_burgeri
ENSXMAG00000001559	polr2f	60	88.158	ENSEASG00005018802	-	82	84.615	Equus_asinus_asinus
ENSXMAG00000001559	polr2f	100	85.827	ENSEEUG00000011014	POLR2F	100	85.827	Erinaceus_europaeus
ENSXMAG00000001559	polr2f	100	94.488	ENSELUG00000000319	polr2f	100	94.488	Esox_lucius
ENSXMAG00000001559	polr2f	100	87.402	ENSFCAG00000002806	POLR2F	100	87.402	Felis_catus
ENSXMAG00000001559	polr2f	100	88.189	ENSFDAG00000009926	POLR2F	100	88.189	Fukomys_damarensis
ENSXMAG00000001559	polr2f	100	97.638	ENSFHEG00000005448	polr2f	100	97.638	Fundulus_heteroclitus
ENSXMAG00000001559	polr2f	100	88.189	ENSGMOG00000009967	polr2f	100	88.189	Gadus_morhua
ENSXMAG00000001559	polr2f	100	88.976	ENSGALG00000012291	POLR2F	100	88.976	Gallus_gallus
ENSXMAG00000001559	polr2f	100	99.213	ENSGAFG00000017573	polr2f	100	99.213	Gambusia_affinis
ENSXMAG00000001559	polr2f	100	92.126	ENSGACG00000007322	polr2f	100	92.126	Gasterosteus_aculeatus
ENSXMAG00000001559	polr2f	100	88.976	ENSGAGG00000021757	POLR2F	100	88.976	Gopherus_agassizii
ENSXMAG00000001559	polr2f	100	88.189	ENSGGOG00000005213	POLR2F	100	88.189	Gorilla_gorilla
ENSXMAG00000001559	polr2f	100	96.850	ENSHBUG00000022089	polr2f	100	96.850	Haplochromis_burtoni
ENSXMAG00000001559	polr2f	100	88.189	ENSHGLG00000018942	POLR2F	100	88.189	Heterocephalus_glaber_female
ENSXMAG00000001559	polr2f	100	88.189	ENSHGLG00100012851	POLR2F	100	88.189	Heterocephalus_glaber_male
ENSXMAG00000001559	polr2f	100	92.913	ENSHCOG00000006149	polr2f	100	92.913	Hippocampus_comes
ENSXMAG00000001559	polr2f	76	97.938	ENSIPUG00000000814	polr2f	100	97.938	Ictalurus_punctatus
ENSXMAG00000001559	polr2f	100	88.189	ENSSTOG00000025722	POLR2F	100	88.189	Ictidomys_tridecemlineatus
ENSXMAG00000001559	polr2f	100	88.189	ENSJJAG00000008097	Polr2f	100	88.189	Jaculus_jaculus
ENSXMAG00000001559	polr2f	100	96.063	ENSKMAG00000014230	polr2f	100	96.063	Kryptolebias_marmoratus
ENSXMAG00000001559	polr2f	83	95.283	ENSLBEG00000008383	polr2f	100	94.167	Labrus_bergylta
ENSXMAG00000001559	polr2f	100	90.551	ENSLACG00000003931	POLR2F	100	90.551	Latimeria_chalumnae
ENSXMAG00000001559	polr2f	100	94.615	ENSLOCG00000011827	polr2f	100	94.615	Lepisosteus_oculatus
ENSXMAG00000001559	polr2f	100	88.189	ENSLAFG00000012632	POLR2F	100	88.189	Loxodonta_africana
ENSXMAG00000001559	polr2f	100	88.189	ENSMFAG00000033687	POLR2F	100	88.189	Macaca_fascicularis
ENSXMAG00000001559	polr2f	83	89.623	ENSMMUG00000038231	POLR2F	99	86.777	Macaca_mulatta
ENSXMAG00000001559	polr2f	100	88.189	ENSMNEG00000044365	POLR2F	100	88.189	Macaca_nemestrina
ENSXMAG00000001559	polr2f	100	88.189	ENSMLEG00000033077	POLR2F	100	88.189	Mandrillus_leucophaeus
ENSXMAG00000001559	polr2f	100	96.850	ENSMAMG00000008056	polr2f	100	96.850	Mastacembelus_armatus
ENSXMAG00000001559	polr2f	100	96.850	ENSMZEG00005005705	polr2f	100	96.850	Maylandia_zebra
ENSXMAG00000001559	polr2f	100	88.976	ENSMGAG00000012504	POLR2F	100	88.976	Meleagris_gallopavo
ENSXMAG00000001559	polr2f	100	88.189	ENSMAUG00000018586	Polr2f	100	88.189	Mesocricetus_auratus
ENSXMAG00000001559	polr2f	100	88.189	ENSMICG00000013128	POLR2F	100	88.189	Microcebus_murinus
ENSXMAG00000001559	polr2f	100	88.189	ENSMOCG00000000237	Polr2f	100	88.189	Microtus_ochrogaster
ENSXMAG00000001559	polr2f	100	98.425	ENSMMOG00000005106	polr2f	100	98.425	Mola_mola
ENSXMAG00000001559	polr2f	100	88.189	ENSMODG00000019063	POLR2F	100	88.189	Monodelphis_domestica
ENSXMAG00000001559	polr2f	100	97.638	ENSMALG00000001444	polr2f	100	97.638	Monopterus_albus
ENSXMAG00000001559	polr2f	100	87.402	MGP_CAROLIEiJ_G0020006	Polr2f	100	87.402	Mus_caroli
ENSXMAG00000001559	polr2f	100	87.402	ENSMUSG00000033020	Polr2f	100	87.755	Mus_musculus
ENSXMAG00000001559	polr2f	100	87.402	MGP_PahariEiJ_G0020008	Polr2f	100	87.402	Mus_pahari
ENSXMAG00000001559	polr2f	100	87.402	MGP_SPRETEiJ_G0020904	Polr2f	100	87.402	Mus_spretus
ENSXMAG00000001559	polr2f	100	87.402	ENSMPUG00000012997	POLR2F	100	87.402	Mustela_putorius_furo
ENSXMAG00000001559	polr2f	100	86.047	ENSMLUG00000014315	-	100	86.047	Myotis_lucifugus
ENSXMAG00000001559	polr2f	98	82.400	ENSMLUG00000029612	-	99	82.400	Myotis_lucifugus
ENSXMAG00000001559	polr2f	100	88.189	ENSNGAG00000020682	Polr2f	100	88.189	Nannospalax_galili
ENSXMAG00000001559	polr2f	100	97.638	ENSNBRG00000002492	polr2f	100	97.638	Neolamprologus_brichardi
ENSXMAG00000001559	polr2f	100	88.189	ENSNLEG00000014987	-	100	88.189	Nomascus_leucogenys
ENSXMAG00000001559	polr2f	100	88.189	ENSODEG00000014123	POLR2F	100	88.189	Octodon_degus
ENSXMAG00000001559	polr2f	100	97.638	ENSONIG00000008394	polr2f	100	97.638	Oreochromis_niloticus
ENSXMAG00000001559	polr2f	100	88.976	ENSOANG00000014684	POLR2F	100	88.976	Ornithorhynchus_anatinus
ENSXMAG00000001559	polr2f	100	88.189	ENSOCUG00000012064	POLR2F	100	88.189	Oryctolagus_cuniculus
ENSXMAG00000001559	polr2f	100	96.063	ENSORLG00000014580	polr2f	100	96.063	Oryzias_latipes
ENSXMAG00000001559	polr2f	100	96.850	ENSORLG00020006910	polr2f	100	96.850	Oryzias_latipes_hni
ENSXMAG00000001559	polr2f	90	95.614	ENSORLG00015015332	polr2f	77	95.614	Oryzias_latipes_hsok
ENSXMAG00000001559	polr2f	80	95.098	ENSOMEG00000006530	polr2f	65	89.091	Oryzias_melastigma
ENSXMAG00000001559	polr2f	100	88.189	ENSOGAG00000025463	POLR2F	100	88.189	Otolemur_garnettii
ENSXMAG00000001559	polr2f	100	88.189	ENSOARG00000014692	POLR2F	100	88.189	Ovis_aries
ENSXMAG00000001559	polr2f	100	88.189	ENSPPAG00000024276	POLR2F	100	88.189	Pan_paniscus
ENSXMAG00000001559	polr2f	100	87.402	ENSPPRG00000013030	POLR2F	100	87.402	Panthera_pardus
ENSXMAG00000001559	polr2f	82	88.462	ENSPTIG00000000632	POLR2F	99	85.124	Panthera_tigris_altaica
ENSXMAG00000001559	polr2f	100	88.189	ENSPTRG00000014356	POLR2F	100	88.189	Pan_troglodytes
ENSXMAG00000001559	polr2f	100	88.189	ENSPANG00000023979	POLR2F	100	88.189	Papio_anubis
ENSXMAG00000001559	polr2f	100	96.850	ENSPKIG00000002464	polr2f	100	96.850	Paramormyrops_kingsleyae
ENSXMAG00000001559	polr2f	56	94.366	ENSPSIG00000013913	POLR2F	100	94.366	Pelodiscus_sinensis
ENSXMAG00000001559	polr2f	100	98.425	ENSPMGG00000009619	polr2f	100	98.425	Periophthalmus_magnuspinnatus
ENSXMAG00000001559	polr2f	100	88.189	ENSPEMG00000008322	Polr2f	100	88.189	Peromyscus_maniculatus_bairdii
ENSXMAG00000001559	polr2f	100	88.189	ENSPCIG00000012000	-	100	88.189	Phascolarctos_cinereus
ENSXMAG00000001559	polr2f	100	100.000	ENSPFOG00000000139	polr2f	100	100.000	Poecilia_formosa
ENSXMAG00000001559	polr2f	100	100.000	ENSPLAG00000000988	polr2f	100	100.000	Poecilia_latipinna
ENSXMAG00000001559	polr2f	100	100.000	ENSPMEG00000019063	polr2f	100	100.000	Poecilia_mexicana
ENSXMAG00000001559	polr2f	77	100.000	ENSPREG00000016749	polr2f	100	100.000	Poecilia_reticulata
ENSXMAG00000001559	polr2f	100	88.189	ENSPPYG00000011809	POLR2F	100	88.189	Pongo_abelii
ENSXMAG00000001559	polr2f	100	88.189	ENSPCOG00000025716	POLR2F	100	88.189	Propithecus_coquereli
ENSXMAG00000001559	polr2f	79	86.000	ENSPVAG00000010107	POLR2F	64	86.000	Pteropus_vampyrus
ENSXMAG00000001559	polr2f	100	96.850	ENSPNYG00000019790	polr2f	100	96.850	Pundamilia_nyererei
ENSXMAG00000001559	polr2f	100	97.638	ENSPNAG00000009017	polr2f	100	97.638	Pygocentrus_nattereri
ENSXMAG00000001559	polr2f	100	87.402	ENSRNOG00000011214	Polr2f	100	87.402	Rattus_norvegicus
ENSXMAG00000001559	polr2f	100	88.189	ENSRBIG00000044878	POLR2F	100	88.189	Rhinopithecus_bieti
ENSXMAG00000001559	polr2f	100	88.189	ENSRROG00000019586	POLR2F	100	88.189	Rhinopithecus_roxellana
ENSXMAG00000001559	polr2f	98	50.980	YPR187W	RPO26	99	50.980	Saccharomyces_cerevisiae
ENSXMAG00000001559	polr2f	100	88.189	ENSSBOG00000023340	POLR2F	100	88.189	Saimiri_boliviensis_boliviensis
ENSXMAG00000001559	polr2f	100	88.189	ENSSHAG00000008502	POLR2F	100	88.189	Sarcophilus_harrisii
ENSXMAG00000001559	polr2f	100	96.063	ENSSFOG00015012810	polr2f	100	96.063	Scleropages_formosus
ENSXMAG00000001559	polr2f	100	97.638	ENSSMAG00000005354	polr2f	100	97.638	Scophthalmus_maximus
ENSXMAG00000001559	polr2f	100	98.425	ENSSDUG00000016273	polr2f	100	98.425	Seriola_dumerili
ENSXMAG00000001559	polr2f	100	98.425	ENSSLDG00000024895	polr2f	100	98.425	Seriola_lalandi_dorsalis
ENSXMAG00000001559	polr2f	100	88.976	ENSSPUG00000011343	POLR2F	100	88.976	Sphenodon_punctatus
ENSXMAG00000001559	polr2f	100	96.850	ENSSPAG00000019646	polr2f	100	96.850	Stegastes_partitus
ENSXMAG00000001559	polr2f	100	87.402	ENSSSCG00000000116	POLR2F	100	87.402	Sus_scrofa
ENSXMAG00000001559	polr2f	57	90.278	ENSTGUG00000016504	-	99	88.506	Taeniopygia_guttata
ENSXMAG00000001559	polr2f	80	90.099	ENSTGUG00000010476	POLR2F	93	88.189	Taeniopygia_guttata
ENSXMAG00000001559	polr2f	100	97.638	ENSTRUG00000021130	polr2f	71	97.638	Takifugu_rubripes
ENSXMAG00000001559	polr2f	100	97.638	ENSTNIG00000010827	polr2f	100	97.638	Tetraodon_nigroviridis
ENSXMAG00000001559	polr2f	79	86.000	ENSTTRG00000004817	POLR2F	64	86.000	Tursiops_truncatus
ENSXMAG00000001559	polr2f	100	87.402	ENSUAMG00000020504	POLR2F	100	87.402	Ursus_americanus
ENSXMAG00000001559	polr2f	100	87.402	ENSUMAG00000015052	POLR2F	100	87.402	Ursus_maritimus
ENSXMAG00000001559	polr2f	83	88.679	ENSVVUG00000024021	POLR2F	92	85.950	Vulpes_vulpes
ENSXMAG00000001559	polr2f	100	89.764	ENSXETG00000006346	polr2f	100	89.764	Xenopus_tropicalis
ENSXMAG00000001559	polr2f	100	100.000	ENSXCOG00000015983	polr2f	100	100.000	Xiphophorus_couchianus