EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000001703 (Gene tree)
Gene ID: 102235710
Gene Symbol: -
Alias: -
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 24137 bases
Position: chr6:1730864-1755000
Accession: 102235710
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000031461	UPF1_Zn_bind	PF09416.10	1e-74	1	1
ENSXMAP00000001707	UPF1_Zn_bind	PF09416.10	1e-74	1	1
ENSXMAP00000031461	ResIII	PF04851.15	4.5e-05	1	1
ENSXMAP00000001707	ResIII	PF04851.15	4.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000030770	-	3252	XM_023335865	ENSXMAP00000031461	1083 (aa)	XP_023191633	-
ENSXMAT00000001711	-	4080	-	ENSXMAP00000001707	1084 (aa)	-	M3ZHL5

Gene Model

Click here to download ENSXMAG00000001703's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000001703's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000001703	-	100	89.821	ENSG00000005007	UPF1	100	89.911	Homo_sapiens
ENSXMAG00000001703	-	100	95.238	ENSAPOG00000023773	upf1	100	95.238	Acanthochromis_polyacanthus
ENSXMAG00000001703	-	100	91.735	ENSAPOG00000010916	-	100	91.735	Acanthochromis_polyacanthus
ENSXMAG00000001703	-	100	89.254	ENSAMEG00000011474	UPF1	100	89.254	Ailuropoda_melanoleuca
ENSXMAG00000001703	-	93	91.699	ENSACIG00000010985	-	100	91.797	Amphilophus_citrinellus
ENSXMAG00000001703	-	100	94.252	ENSACIG00000019949	upf1	100	94.617	Amphilophus_citrinellus
ENSXMAG00000001703	-	100	91.826	ENSAOCG00000006352	-	100	91.826	Amphiprion_ocellaris
ENSXMAG00000001703	-	100	94.940	ENSAOCG00000018519	upf1	100	94.940	Amphiprion_ocellaris
ENSXMAG00000001703	-	100	94.940	ENSAPEG00000016344	upf1	100	94.940	Amphiprion_percula
ENSXMAG00000001703	-	100	91.826	ENSAPEG00000006292	-	100	91.826	Amphiprion_percula
ENSXMAG00000001703	-	100	92.466	ENSATEG00000017867	upf1	100	92.735	Anabas_testudineus
ENSXMAG00000001703	-	100	91.644	ENSATEG00000016606	-	100	91.644	Anabas_testudineus
ENSXMAG00000001703	-	95	91.374	ENSAPLG00000009175	UPF1	100	91.374	Anas_platyrhynchos
ENSXMAG00000001703	-	95	89.067	ENSANAG00000024107	UPF1	96	89.067	Aotus_nancymaae
ENSXMAG00000001703	-	100	93.978	ENSACLG00000007181	upf1	100	94.343	Astatotilapia_calliptera
ENSXMAG00000001703	-	100	91.644	ENSACLG00000022630	-	100	91.735	Astatotilapia_calliptera
ENSXMAG00000001703	-	100	92.734	ENSAMXG00000042187	upf1	100	92.727	Astyanax_mexicanus
ENSXMAG00000001703	-	100	89.273	ENSBTAG00000020922	UPF1	100	89.362	Bos_taurus
ENSXMAG00000001703	-	81	55.227	WBGene00004880	smg-2	81	55.227	Caenorhabditis_elegans
ENSXMAG00000001703	-	100	88.948	ENSCJAG00000019627	UPF1	100	89.036	Callithrix_jacchus
ENSXMAG00000001703	-	100	89.036	ENSCAFG00000014578	UPF1	100	89.125	Canis_familiaris
ENSXMAG00000001703	-	100	89.911	ENSCAFG00020012347	UPF1	100	90.000	Canis_lupus_dingo
ENSXMAG00000001703	-	100	90.152	ENSCHIG00000011018	UPF1	100	90.242	Capra_hircus
ENSXMAG00000001703	-	95	91.160	ENSTSYG00000008877	UPF1	98	91.160	Carlito_syrichta
ENSXMAG00000001703	-	96	90.216	ENSCAPG00000005758	UPF1	96	90.216	Cavia_aperea
ENSXMAG00000001703	-	100	90.189	ENSCPOG00000025463	UPF1	100	90.189	Cavia_porcellus
ENSXMAG00000001703	-	100	89.821	ENSCCAG00000032175	UPF1	100	89.911	Cebus_capucinus
ENSXMAG00000001703	-	94	91.317	ENSCATG00000040306	UPF1	98	91.317	Cercocebus_atys
ENSXMAG00000001703	-	95	91.160	ENSCLAG00000004037	UPF1	99	91.160	Chinchilla_lanigera
ENSXMAG00000001703	-	100	89.821	ENSCSAG00000005276	UPF1	100	89.911	Chlorocebus_sabaeus
ENSXMAG00000001703	-	100	90.215	ENSCPBG00000012513	UPF1	100	90.485	Chrysemys_picta_bellii
ENSXMAG00000001703	-	78	79.930	ENSCING00000021399	-	99	79.930	Ciona_intestinalis
ENSXMAG00000001703	-	99	72.975	ENSCSAVG00000006533	-	99	73.297	Ciona_savignyi
ENSXMAG00000001703	-	95	91.065	ENSCANG00000029819	UPF1	97	91.065	Colobus_angolensis_palliatus
ENSXMAG00000001703	-	100	89.865	ENSCGRG00001021067	Upf1	100	89.955	Cricetulus_griseus_chok1gshd
ENSXMAG00000001703	-	95	90.207	ENSCGRG00000013480	Upf1	99	90.207	Cricetulus_griseus_crigri
ENSXMAG00000001703	-	100	91.621	ENSCSEG00000016159	-	100	91.621	Cynoglossus_semilaevis
ENSXMAG00000001703	-	100	89.899	ENSCSEG00000017239	upf1	100	89.899	Cynoglossus_semilaevis
ENSXMAG00000001703	-	100	91.099	ENSCVAG00000010561	upf1	100	91.190	Cyprinodon_variegatus
ENSXMAG00000001703	-	100	92.916	ENSDARG00000016302	upf1	100	92.909	Danio_rerio
ENSXMAG00000001703	-	95	88.699	ENSDORG00000009984	Upf1	95	88.699	Dipodomys_ordii
ENSXMAG00000001703	-	86	72.679	FBgn0030354	Upf1	81	71.547	Drosophila_melanogaster
ENSXMAG00000001703	-	55	86.921	ENSEBUG00000010069	upf1	96	86.921	Eptatretus_burgeri
ENSXMAG00000001703	-	100	90.152	ENSEASG00005006549	UPF1	100	90.242	Equus_asinus_asinus
ENSXMAG00000001703	-	100	90.152	ENSECAG00000010639	UPF1	100	90.242	Equus_caballus
ENSXMAG00000001703	-	100	91.848	ENSELUG00000020917	upf1	100	92.308	Esox_lucius
ENSXMAG00000001703	-	100	91.328	ENSELUG00000012916	-	100	91.418	Esox_lucius
ENSXMAG00000001703	-	100	89.036	ENSFCAG00000009757	UPF1	100	89.125	Felis_catus
ENSXMAG00000001703	-	95	91.889	ENSFALG00000009312	UPF1	96	91.889	Ficedula_albicollis
ENSXMAG00000001703	-	95	91.065	ENSFDAG00000014816	UPF1	99	91.065	Fukomys_damarensis
ENSXMAG00000001703	-	86	93.017	ENSFHEG00000016276	-	96	93.017	Fundulus_heteroclitus
ENSXMAG00000001703	-	100	92.613	ENSFHEG00000006428	upf1	100	92.613	Fundulus_heteroclitus
ENSXMAG00000001703	-	100	90.884	ENSGMOG00000007541	upf1	100	90.975	Gadus_morhua
ENSXMAG00000001703	-	100	90.072	ENSGALG00000003220	UPF1	100	90.340	Gallus_gallus
ENSXMAG00000001703	-	100	91.613	ENSGAFG00000004831	upf1	100	91.705	Gambusia_affinis
ENSXMAG00000001703	-	64	97.695	ENSGAFG00000015443	-	85	97.695	Gambusia_affinis
ENSXMAG00000001703	-	100	90.712	ENSGAGG00000022217	UPF1	100	91.073	Gopherus_agassizii
ENSXMAG00000001703	-	95	92.027	ENSGGOG00000002608	UPF1	99	92.027	Gorilla_gorilla
ENSXMAG00000001703	-	90	92.308	ENSHBUG00000014694	upf1	100	92.308	Haplochromis_burtoni
ENSXMAG00000001703	-	88	94.858	ENSHBUG00000008939	upf1	96	94.858	Haplochromis_burtoni
ENSXMAG00000001703	-	100	89.125	ENSHGLG00000010900	UPF1	100	89.213	Heterocephalus_glaber_female
ENSXMAG00000001703	-	95	89.544	ENSHGLG00100005904	UPF1	96	89.544	Heterocephalus_glaber_male
ENSXMAG00000001703	-	100	91.727	ENSHCOG00000008918	upf1	100	91.909	Hippocampus_comes
ENSXMAG00000001703	-	100	92.916	ENSIPUG00000005108	UPF1	100	92.909	Ictalurus_punctatus
ENSXMAG00000001703	-	100	89.821	ENSSTOG00000009196	UPF1	100	89.911	Ictidomys_tridecemlineatus
ENSXMAG00000001703	-	100	88.958	ENSJJAG00000023151	Upf1	100	89.136	Jaculus_jaculus
ENSXMAG00000001703	-	100	91.371	ENSKMAG00000004962	upf1	100	91.371	Kryptolebias_marmoratus
ENSXMAG00000001703	-	100	92.363	ENSLBEG00000014862	upf1	100	92.722	Labrus_bergylta
ENSXMAG00000001703	-	100	91.289	ENSLBEG00000027848	-	100	91.379	Labrus_bergylta
ENSXMAG00000001703	-	63	91.679	ENSLACG00000008482	UPF1	100	91.679	Latimeria_chalumnae
ENSXMAG00000001703	-	100	92.371	ENSLOCG00000002072	upf1	100	92.371	Lepisosteus_oculatus
ENSXMAG00000001703	-	100	88.840	ENSLAFG00000014963	UPF1	100	88.928	Loxodonta_africana
ENSXMAG00000001703	-	100	89.581	ENSMFAG00000037748	UPF1	100	89.671	Macaca_fascicularis
ENSXMAG00000001703	-	100	89.343	ENSMMUG00000023286	UPF1	100	89.432	Macaca_mulatta
ENSXMAG00000001703	-	100	89.581	ENSMNEG00000000046	UPF1	100	89.671	Macaca_nemestrina
ENSXMAG00000001703	-	95	91.065	ENSMLEG00000028404	UPF1	99	91.065	Mandrillus_leucophaeus
ENSXMAG00000001703	-	100	91.652	ENSMAMG00000006231	-	100	91.652	Mastacembelus_armatus
ENSXMAG00000001703	-	100	92.466	ENSMAMG00000006229	upf1	100	92.825	Mastacembelus_armatus
ENSXMAG00000001703	-	100	91.644	ENSMZEG00005016386	-	100	91.735	Maylandia_zebra
ENSXMAG00000001703	-	100	93.237	ENSMZEG00005003489	upf1	100	93.237	Maylandia_zebra
ENSXMAG00000001703	-	95	90.978	ENSMGAG00000004745	UPF1	100	90.978	Meleagris_gallopavo
ENSXMAG00000001703	-	96	89.449	ENSMAUG00000011398	Upf1	97	89.449	Mesocricetus_auratus
ENSXMAG00000001703	-	100	89.911	ENSMICG00000001659	UPF1	100	90.000	Microcebus_murinus
ENSXMAG00000001703	-	100	88.988	ENSMOCG00000005699	Upf1	100	88.988	Microtus_ochrogaster
ENSXMAG00000001703	-	95	89.187	ENSMMOG00000007537	-	99	89.187	Mola_mola
ENSXMAG00000001703	-	100	93.951	ENSMMOG00000007881	upf1	100	93.951	Mola_mola
ENSXMAG00000001703	-	100	88.977	ENSMODG00000003689	UPF1	100	89.065	Monodelphis_domestica
ENSXMAG00000001703	-	100	94.557	ENSMALG00000000144	upf1	100	94.664	Monopterus_albus
ENSXMAG00000001703	-	100	90.136	ENSMALG00000018100	-	100	90.136	Monopterus_albus
ENSXMAG00000001703	-	100	89.677	MGP_CAROLIEiJ_G0031142	Upf1	100	89.767	Mus_caroli
ENSXMAG00000001703	-	100	89.677	ENSMUSG00000058301	Upf1	100	89.767	Mus_musculus
ENSXMAG00000001703	-	100	89.677	MGP_PahariEiJ_G0021607	Upf1	100	89.767	Mus_pahari
ENSXMAG00000001703	-	100	89.677	MGP_SPRETEiJ_G0032260	Upf1	100	89.767	Mus_spretus
ENSXMAG00000001703	-	100	89.911	ENSMPUG00000015516	UPF1	100	90.000	Mustela_putorius_furo
ENSXMAG00000001703	-	99	89.785	ENSMLUG00000012122	UPF1	99	89.875	Myotis_lucifugus
ENSXMAG00000001703	-	100	88.663	ENSNGAG00000024107	Upf1	100	88.751	Nannospalax_galili
ENSXMAG00000001703	-	100	91.880	ENSNBRG00000000670	upf1	100	92.245	Neolamprologus_brichardi
ENSXMAG00000001703	-	100	88.266	ENSNBRG00000022069	-	100	91.254	Neolamprologus_brichardi
ENSXMAG00000001703	-	95	85.361	ENSNLEG00000006062	UPF1	99	85.361	Nomascus_leucogenys
ENSXMAG00000001703	-	83	85.519	ENSMEUG00000014146	-	83	85.323	Notamacropus_eugenii
ENSXMAG00000001703	-	95	85.441	ENSOPRG00000014018	UPF1	99	85.441	Ochotona_princeps
ENSXMAG00000001703	-	100	90.099	ENSODEG00000012426	UPF1	100	90.099	Octodon_degus
ENSXMAG00000001703	-	100	91.644	ENSONIG00000012729	-	100	91.735	Oreochromis_niloticus
ENSXMAG00000001703	-	100	93.417	ENSONIG00000010452	upf1	100	93.417	Oreochromis_niloticus
ENSXMAG00000001703	-	100	89.618	ENSOANG00000004568	UPF1	100	89.707	Ornithorhynchus_anatinus
ENSXMAG00000001703	-	100	91.190	ENSORLG00000008453	upf1	100	91.190	Oryzias_latipes
ENSXMAG00000001703	-	100	91.107	ENSORLG00020014758	upf1	100	91.107	Oryzias_latipes_hni
ENSXMAG00000001703	-	100	91.107	ENSORLG00015010165	upf1	100	91.107	Oryzias_latipes_hsok
ENSXMAG00000001703	-	100	91.462	ENSOMEG00000003665	upf1	100	91.462	Oryzias_melastigma
ENSXMAG00000001703	-	100	89.911	ENSOGAG00000012866	UPF1	100	90.000	Otolemur_garnettii
ENSXMAG00000001703	-	98	88.198	ENSOARG00000010739	UPF1	100	88.040	Ovis_aries
ENSXMAG00000001703	-	95	91.065	ENSPPAG00000043884	UPF1	96	91.065	Pan_paniscus
ENSXMAG00000001703	-	100	89.036	ENSPPRG00000023470	UPF1	100	89.125	Panthera_pardus
ENSXMAG00000001703	-	95	89.933	ENSPTIG00000010159	UPF1	99	89.933	Panthera_tigris_altaica
ENSXMAG00000001703	-	100	89.581	ENSPTRG00000010721	UPF1	100	89.671	Pan_troglodytes
ENSXMAG00000001703	-	100	89.581	ENSPANG00000008847	UPF1	100	89.671	Papio_anubis
ENSXMAG00000001703	-	93	93.843	ENSPKIG00000006069	upf1	97	93.843	Paramormyrops_kingsleyae
ENSXMAG00000001703	-	69	90.731	ENSPSIG00000009491	UPF1	100	90.731	Pelodiscus_sinensis
ENSXMAG00000001703	-	100	91.735	ENSPMGG00000017327	upf1	100	91.916	Periophthalmus_magnuspinnatus
ENSXMAG00000001703	-	100	88.988	ENSPEMG00000001085	Upf1	100	89.076	Peromyscus_maniculatus_bairdii
ENSXMAG00000001703	-	100	86.980	ENSPMAG00000001206	upf1	100	86.980	Petromyzon_marinus
ENSXMAG00000001703	-	100	90.259	ENSPCIG00000006156	UPF1	100	90.349	Phascolarctos_cinereus
ENSXMAG00000001703	-	100	91.613	ENSPLAG00000016232	-	100	91.705	Poecilia_latipinna
ENSXMAG00000001703	-	100	95.574	ENSPLAG00000018155	-	100	95.574	Poecilia_latipinna
ENSXMAG00000001703	-	100	96.709	ENSPMEG00000011443	-	100	96.709	Poecilia_mexicana
ENSXMAG00000001703	-	100	91.530	ENSPMEG00000016319	-	100	91.621	Poecilia_mexicana
ENSXMAG00000001703	-	100	91.522	ENSPREG00000011247	-	100	91.705	Poecilia_reticulata
ENSXMAG00000001703	-	100	95.491	ENSPREG00000009940	upf1	100	95.491	Poecilia_reticulata
ENSXMAG00000001703	-	100	84.309	ENSPPYG00000009752	UPF1	100	84.397	Pongo_abelii
ENSXMAG00000001703	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSXMAG00000001703	-	100	89.511	ENSPCOG00000023813	UPF1	100	89.600	Propithecus_coquereli
ENSXMAG00000001703	-	69	94.872	ENSPVAG00000003183	UPF1	69	94.872	Pteropus_vampyrus
ENSXMAG00000001703	-	100	93.237	ENSPNYG00000003694	upf1	100	93.237	Pundamilia_nyererei
ENSXMAG00000001703	-	100	91.644	ENSPNYG00000016731	-	100	91.735	Pundamilia_nyererei
ENSXMAG00000001703	-	100	92.825	ENSPNAG00000025614	upf1	100	92.818	Pygocentrus_nattereri
ENSXMAG00000001703	-	100	89.776	ENSRNOG00000020134	Upf1	100	89.865	Rattus_norvegicus
ENSXMAG00000001703	-	95	88.783	ENSRBIG00000013894	UPF1	98	92.232	Rhinopithecus_bieti
ENSXMAG00000001703	-	95	91.065	ENSRROG00000040935	UPF1	98	92.232	Rhinopithecus_roxellana
ENSXMAG00000001703	-	75	56.916	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSXMAG00000001703	-	94	91.317	ENSSBOG00000023632	UPF1	96	91.317	Saimiri_boliviensis_boliviensis
ENSXMAG00000001703	-	95	91.271	ENSSHAG00000010499	UPF1	100	91.271	Sarcophilus_harrisii
ENSXMAG00000001703	-	100	92.098	ENSSFOG00015021095	upf1	100	92.377	Scleropages_formosus
ENSXMAG00000001703	-	100	91.554	ENSSMAG00000005055	upf1	100	91.824	Scophthalmus_maximus
ENSXMAG00000001703	-	100	91.924	ENSSMAG00000021018	-	100	91.924	Scophthalmus_maximus
ENSXMAG00000001703	-	100	92.735	ENSSDUG00000013320	upf1	100	93.094	Seriola_dumerili
ENSXMAG00000001703	-	100	91.652	ENSSDUG00000009629	-	100	91.652	Seriola_dumerili
ENSXMAG00000001703	-	100	91.652	ENSSLDG00000006878	-	100	91.652	Seriola_lalandi_dorsalis
ENSXMAG00000001703	-	100	93.575	ENSSLDG00000020868	upf1	100	93.937	Seriola_lalandi_dorsalis
ENSXMAG00000001703	-	100	90.541	ENSSPUG00000010538	UPF1	100	90.991	Sphenodon_punctatus
ENSXMAG00000001703	-	100	91.727	ENSSPAG00000011521	-	100	91.727	Stegastes_partitus
ENSXMAG00000001703	-	100	92.153	ENSSPAG00000000003	upf1	100	92.336	Stegastes_partitus
ENSXMAG00000001703	-	100	90.063	ENSSSCG00000039301	UPF1	99	91.946	Sus_scrofa
ENSXMAG00000001703	-	83	85.851	ENSTGUG00000001057	UPF1	100	89.941	Taeniopygia_guttata
ENSXMAG00000001703	-	100	90.827	ENSTRUG00000005131	-	100	90.992	Takifugu_rubripes
ENSXMAG00000001703	-	100	94.557	ENSTRUG00000000150	upf1	100	94.557	Takifugu_rubripes
ENSXMAG00000001703	-	100	86.482	ENSTTRG00000011544	UPF1	100	86.482	Tursiops_truncatus
ENSXMAG00000001703	-	100	89.911	ENSUAMG00000007093	UPF1	100	90.000	Ursus_americanus
ENSXMAG00000001703	-	95	92.042	ENSUMAG00000006652	UPF1	99	92.850	Ursus_maritimus
ENSXMAG00000001703	-	100	89.911	ENSVVUG00000007797	UPF1	100	90.000	Vulpes_vulpes
ENSXMAG00000001703	-	100	77.621	ENSXETG00000013602	upf1	100	77.621	Xenopus_tropicalis
ENSXMAG00000001703	-	94	92.210	ENSXCOG00000005764	-	99	92.308	Xiphophorus_couchianus
ENSXMAG00000001703	-	97	99.522	ENSXCOG00000015275	-	96	99.522	Xiphophorus_couchianus
ENSXMAG00000001703	-	100	91.530	ENSXMAG00000002540	-	100	91.621	Xiphophorus_maculatus