EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000001862 (Gene tree)
Gene ID
102222253
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Plus strand
Length
18385 bases
Position
chr21:6673482-6691866
Accession
102222253
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000024226RRM_1PF00076.225.7e-4512
ENSXMAP00000024226RRM_1PF00076.225.7e-4522
ENSXMAP00000001860RRM_1PF00076.226.8e-4512
ENSXMAP00000001860RRM_1PF00076.226.8e-4522
ENSXMAP00000020779RRM_1PF00076.221.1e-4312
ENSXMAP00000020779RRM_1PF00076.221.1e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000033745-2401XM_005798535ENSXMAP00000020779513 (aa)XP_005798592-
ENSXMAT00000001864-2308XM_005798534ENSXMAP00000001860552 (aa)XP_005798591M3ZI18
ENSXMAT00000026940-2257XM_023325818ENSXMAP00000024226535 (aa)XP_023181586-
Gene Model
Click here to download ENSXMAG00000001862's gene model file
Pathways
Pathway IDPathway NameSource
xma03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000001862's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000001862puf60b10085.988ENSG00000179950PUF6010084.837Homo_sapiens
ENSXMAG00000001862puf60b10097.661ENSAPOG00000001713puf60b10097.338Acanthochromis_polyacanthus
ENSXMAG00000001862puf60b10084.069ENSAMEG00000006406PUF609381.973Ailuropoda_melanoleuca
ENSXMAG00000001862puf60b10077.821ENSACIG00000003263-9977.670Amphilophus_citrinellus
ENSXMAG00000001862puf60b10098.051ENSACIG00000021705puf60b10098.051Amphilophus_citrinellus
ENSXMAG00000001862puf60b10083.658ENSAOCG00000015558-10083.302Amphiprion_ocellaris
ENSXMAG00000001862puf60b10097.661ENSAOCG00000005395puf60b10097.661Amphiprion_ocellaris
ENSXMAG00000001862puf60b10074.419ENSAPEG00000001836-9978.088Amphiprion_percula
ENSXMAG00000001862puf60b10092.008ENSAPEG00000011923puf60b10093.910Amphiprion_percula
ENSXMAG00000001862puf60b10098.441ENSATEG00000001730puf60b10097.719Anabas_testudineus
ENSXMAG00000001862puf60b10082.296ENSATEG00000006303-10081.973Anabas_testudineus
ENSXMAG00000001862puf60b10086.564ENSAPLG00000010150PUF6010084.820Anas_platyrhynchos
ENSXMAG00000001862puf60b10085.496ENSACAG00000001645PUF609784.091Anolis_carolinensis
ENSXMAG00000001862puf60b10085.797ENSANAG00000018626PUF6010084.645Aotus_nancymaae
ENSXMAG00000001862puf60b10098.051ENSACLG00000004462puf60b10098.051Astatotilapia_calliptera
ENSXMAG00000001862puf60b10086.476ENSAMXG00000036570puf60a9887.747Astyanax_mexicanus
ENSXMAG00000001862puf60b10080.835ENSAMXG00000041030puf60b10081.404Astyanax_mexicanus
ENSXMAG00000001862puf60b10086.372ENSBTAG00000037493PUF6010083.738Bos_taurus
ENSXMAG00000001862puf60b8150.667WBGene00004389rnp-68852.961Caenorhabditis_elegans
ENSXMAG00000001862puf60b10085.988ENSCJAG00000021485PUF6010083.364Callithrix_jacchus
ENSXMAG00000001862puf60b10085.797ENSCAFG00000001400PUF609383.871Canis_familiaris
ENSXMAG00000001862puf60b10086.180ENSCAFG00020018754PUF6010083.551Canis_lupus_dingo
ENSXMAG00000001862puf60b10086.372ENSCHIG00000001618PUF608784.440Capra_hircus
ENSXMAG00000001862puf60b10086.180ENSTSYG00000011912PUF6010085.029Carlito_syrichta
ENSXMAG00000001862puf60b10081.333ENSCPOG00000014613PUF609479.473Cavia_porcellus
ENSXMAG00000001862puf60b10086.180ENSCCAG00000007744PUF6010083.551Cebus_capucinus
ENSXMAG00000001862puf60b10085.988ENSCATG00000035405PUF6010083.364Cercocebus_atys
ENSXMAG00000001862puf60b10086.180ENSCLAG00000009154PUF609384.250Chinchilla_lanigera
ENSXMAG00000001862puf60b10085.988ENSCSAG00000008878PUF6010084.837Chlorocebus_sabaeus
ENSXMAG00000001862puf60b10085.605ENSCPBG00000005595PUF609983.804Chrysemys_picta_bellii
ENSXMAG00000001862puf60b9848.444ENSCING00000008436-9947.538Ciona_intestinalis
ENSXMAG00000001862puf60b6358.876ENSCING00000002156-8762.579Ciona_intestinalis
ENSXMAG00000001862puf60b9748.400ENSCSAVG00000004765-9748.571Ciona_savignyi
ENSXMAG00000001862puf60b9754.286ENSCSAVG00000001385-9954.143Ciona_savignyi
ENSXMAG00000001862puf60b8185.545ENSCANG00000041843PUF6010084.123Colobus_angolensis_palliatus
ENSXMAG00000001862puf60b10086.372ENSCGRG00001017442Puf609384.440Cricetulus_griseus_chok1gshd
ENSXMAG00000001862puf60b10086.372ENSCGRG00000003717Puf609384.440Cricetulus_griseus_crigri
ENSXMAG00000001862puf60b10098.051ENSCSEG00000019887puf60b9496.970Cynoglossus_semilaevis
ENSXMAG00000001862puf60b10076.686ENSCSEG00000014845-9178.947Cynoglossus_semilaevis
ENSXMAG00000001862puf60b10099.025ENSCVAG00000009386puf60b10099.025Cyprinodon_variegatus
ENSXMAG00000001862puf60b9181.838ENSCVAG00000001560-9881.197Cyprinodon_variegatus
ENSXMAG00000001862puf60b10087.283ENSDARG00000032175puf60a9991.925Danio_rerio
ENSXMAG00000001862puf60b10081.784ENSDARG00000001241puf60b9998.413Danio_rerio
ENSXMAG00000001862puf60b9971.595ENSDNOG00000043278PUF609071.206Dasypus_novemcinctus
ENSXMAG00000001862puf60b10086.372ENSDORG00000004585Puf609584.440Dipodomys_ordii
ENSXMAG00000001862puf60b8563.103FBgn0028577hfp7267.843Drosophila_melanogaster
ENSXMAG00000001862puf60b9770.120ENSEBUG00000005470-9468.859Eptatretus_burgeri
ENSXMAG00000001862puf60b10059.459ENSEBUG00000014291puf60b8462.587Eptatretus_burgeri
ENSXMAG00000001862puf60b10086.180ENSEASG00005009695PUF6010083.551Equus_asinus_asinus
ENSXMAG00000001862puf60b10086.180ENSECAG00000024681PUF609884.121Equus_caballus
ENSXMAG00000001862puf60b10087.977ENSELUG00000006507puf60b10085.278Esox_lucius
ENSXMAG00000001862puf60b10088.588ENSELUG00000018443-10087.925Esox_lucius
ENSXMAG00000001862puf60b10086.180ENSFCAG00000001045PUF6010085.029Felis_catus
ENSXMAG00000001862puf60b10077.351ENSFALG00000001136PUF609876.281Ficedula_albicollis
ENSXMAG00000001862puf60b10085.988ENSFDAG00000017177PUF609384.250Fukomys_damarensis
ENSXMAG00000001862puf60b10099.805ENSFHEG00000020046puf60b10099.810Fundulus_heteroclitus
ENSXMAG00000001862puf60b9682.485ENSFHEG00000021687PUF6010083.402Fundulus_heteroclitus
ENSXMAG00000001862puf60b10083.012ENSGMOG00000006392puf60b10082.061Gadus_morhua
ENSXMAG00000001862puf60b6689.504ENSGALG00000039901PUF609390.533Gallus_gallus
ENSXMAG00000001862puf60b10099.805ENSGAFG00000021040puf60b10099.805Gambusia_affinis
ENSXMAG00000001862puf60b10080.583ENSGAFG00000004334-9980.903Gambusia_affinis
ENSXMAG00000001862puf60b10073.152ENSGACG00000001484-10072.179Gasterosteus_aculeatus
ENSXMAG00000001862puf60b10084.211ENSGACG00000004717puf60b9884.393Gasterosteus_aculeatus
ENSXMAG00000001862puf60b10085.605ENSGAGG00000013289PUF609383.396Gopherus_agassizii
ENSXMAG00000001862puf60b10085.988ENSGGOG00000004646PUF6010083.364Gorilla_gorilla
ENSXMAG00000001862puf60b10083.463ENSHBUG00000009634-10083.300Haplochromis_burtoni
ENSXMAG00000001862puf60b10098.051ENSHBUG00000015118puf60b10098.051Haplochromis_burtoni
ENSXMAG00000001862puf60b10085.988ENSHGLG00000006111PUF609384.250Heterocephalus_glaber_female
ENSXMAG00000001862puf60b10085.988ENSHGLG00100012362PUF609384.250Heterocephalus_glaber_male
ENSXMAG00000001862puf60b10092.481ENSHCOG00000015541puf60b10093.071Hippocampus_comes
ENSXMAG00000001862puf60b9867.451ENSHCOG00000000378-9966.163Hippocampus_comes
ENSXMAG00000001862puf60b10082.197ENSIPUG00000004660puf60b9981.818Ictalurus_punctatus
ENSXMAG00000001862puf60b10085.029ENSIPUG00000002453puf60a9984.645Ictalurus_punctatus
ENSXMAG00000001862puf60b10086.180ENSSTOG00000025037PUF609484.250Ictidomys_tridecemlineatus
ENSXMAG00000001862puf60b10086.372ENSJJAG00000001076Puf609384.440Jaculus_jaculus
ENSXMAG00000001862puf60b10077.927ENSKMAG00000010106-10078.352Kryptolebias_marmoratus
ENSXMAG00000001862puf60b10099.415ENSKMAG00000016745puf60b10099.415Kryptolebias_marmoratus
ENSXMAG00000001862puf60b10093.957ENSLBEG00000012505puf60b10094.027Labrus_bergylta
ENSXMAG00000001862puf60b7080.163ENSLACG00000005456PUF6010078.016Latimeria_chalumnae
ENSXMAG00000001862puf60b10089.126ENSLOCG00000010106puf60b10088.636Lepisosteus_oculatus
ENSXMAG00000001862puf60b10085.029ENSLAFG00000022929PUF609483.302Loxodonta_africana
ENSXMAG00000001862puf60b10085.988ENSMFAG00000043373PUF6010083.364Macaca_fascicularis
ENSXMAG00000001862puf60b10085.988ENSMMUG00000013558PUF6010083.364Macaca_mulatta
ENSXMAG00000001862puf60b10085.988ENSMNEG00000031099PUF6010083.364Macaca_nemestrina
ENSXMAG00000001862puf60b10085.988ENSMLEG00000040009PUF6010084.837Mandrillus_leucophaeus
ENSXMAG00000001862puf60b10083.495ENSMAMG00000019476-10082.955Mastacembelus_armatus
ENSXMAG00000001862puf60b10096.296ENSMAMG00000010394puf60b10093.738Mastacembelus_armatus
ENSXMAG00000001862puf60b10083.463ENSMZEG00005019425-10082.353Maylandia_zebra
ENSXMAG00000001862puf60b10098.051ENSMZEG00005018515puf60b10098.051Maylandia_zebra
ENSXMAG00000001862puf60b10086.564ENSMGAG00000013070PUF609390.855Meleagris_gallopavo
ENSXMAG00000001862puf60b9668.849ENSMAUG00000018549-9570.287Mesocricetus_auratus
ENSXMAG00000001862puf60b6990.278ENSMAUG00000014267-9087.432Mesocricetus_auratus
ENSXMAG00000001862puf60b10086.180ENSMICG00000012226PUF6010083.551Microcebus_murinus
ENSXMAG00000001862puf60b10086.372ENSMOCG00000018780Puf609384.440Microtus_ochrogaster
ENSXMAG00000001862puf60b10073.786ENSMMOG00000018059-9976.376Mola_mola
ENSXMAG00000001862puf60b10098.246ENSMMOG00000004217puf60b10098.246Mola_mola
ENSXMAG00000001862puf60b10085.797ENSMODG00000009161PUF609483.871Monodelphis_domestica
ENSXMAG00000001862puf60b10090.058ENSMALG00000006797puf60b10089.544Monopterus_albus
ENSXMAG00000001862puf60b10082.296ENSMALG00000000200-10081.214Monopterus_albus
ENSXMAG00000001862puf60b10086.564MGP_CAROLIEiJ_G0019910Puf609384.820Mus_caroli
ENSXMAG00000001862puf60b10086.564ENSMUSG00000002524Puf609384.820Mus_musculus
ENSXMAG00000001862puf60b10086.564MGP_PahariEiJ_G0019920Puf609384.820Mus_pahari
ENSXMAG00000001862puf60b10086.564MGP_SPRETEiJ_G0020812Puf609384.820Mus_spretus
ENSXMAG00000001862puf60b10085.988ENSMPUG00000008137PUF609284.061Mustela_putorius_furo
ENSXMAG00000001862puf60b10079.655ENSMLUG00000013032-9880.196Myotis_lucifugus
ENSXMAG00000001862puf60b10085.605ENSMLUG00000000238-9383.681Myotis_lucifugus
ENSXMAG00000001862puf60b10086.372ENSNGAG00000000712Puf6010085.221Nannospalax_galili
ENSXMAG00000001862puf60b10083.463ENSNBRG00000017223-10082.353Neolamprologus_brichardi
ENSXMAG00000001862puf60b8395.413ENSNBRG00000013047puf60b9797.362Neolamprologus_brichardi
ENSXMAG00000001862puf60b10085.988ENSNLEG00000002156PUF6010082.819Nomascus_leucogenys
ENSXMAG00000001862puf60b7293.863ENSOPRG00000002147PUF607293.863Ochotona_princeps
ENSXMAG00000001862puf60b9863.690ENSODEG00000015513-9762.089Octodon_degus
ENSXMAG00000001862puf60b7190.294ENSODEG00000014024-8990.294Octodon_degus
ENSXMAG00000001862puf60b10098.051ENSONIG00000006247puf60b9898.073Oreochromis_niloticus
ENSXMAG00000001862puf60b10083.268ENSONIG00000014030-10082.008Oreochromis_niloticus
ENSXMAG00000001862puf60b9772.200ENSOANG00000006962PUF609870.099Ornithorhynchus_anatinus
ENSXMAG00000001862puf60b9982.081ENSORLG00000028655-9981.888Oryzias_latipes
ENSXMAG00000001862puf60b10098.441ENSORLG00000012279puf60b10098.441Oryzias_latipes
ENSXMAG00000001862puf60b9982.718ENSORLG00020018144-9981.818Oryzias_latipes_hni
ENSXMAG00000001862puf60b10098.441ENSORLG00020007333puf6010098.441Oryzias_latipes_hni
ENSXMAG00000001862puf60b10098.058ENSORLG00015007718puf60b10098.058Oryzias_latipes_hsok
ENSXMAG00000001862puf60b9982.718ENSORLG00015016833-9981.629Oryzias_latipes_hsok
ENSXMAG00000001862puf60b9982.685ENSOMEG00000022185-9981.784Oryzias_melastigma
ENSXMAG00000001862puf60b10095.992ENSOMEG00000001643puf60b10095.717Oryzias_melastigma
ENSXMAG00000001862puf60b10086.180ENSOGAG00000006259PUF609384.250Otolemur_garnettii
ENSXMAG00000001862puf60b10084.556ENSOARG00000016235PUF609882.634Ovis_aries
ENSXMAG00000001862puf60b10085.988ENSPPAG00000029933PUF6010083.364Pan_paniscus
ENSXMAG00000001862puf60b10086.180ENSPPRG00000003257PUF6010085.029Panthera_pardus
ENSXMAG00000001862puf60b10083.877ENSPTIG00000009795PUF609981.973Panthera_tigris_altaica
ENSXMAG00000001862puf60b10085.988ENSPTRG00000043963-9884.061Pan_troglodytes
ENSXMAG00000001862puf60b10085.988ENSPTRG00000020670PUF6010083.364Pan_troglodytes
ENSXMAG00000001862puf60b10085.988ENSPANG00000021936PUF6010083.364Papio_anubis
ENSXMAG00000001862puf60b10089.168ENSPKIG00000004295puf60a9991.940Paramormyrops_kingsleyae
ENSXMAG00000001862puf60b10090.253ENSPKIG00000012204puf60b10091.033Paramormyrops_kingsleyae
ENSXMAG00000001862puf60b10085.988ENSPSIG00000004679PUF609984.250Pelodiscus_sinensis
ENSXMAG00000001862puf60b10095.930ENSPMGG00000013444puf60b10095.560Periophthalmus_magnuspinnatus
ENSXMAG00000001862puf60b10086.372ENSPEMG00000008820Puf609384.440Peromyscus_maniculatus_bairdii
ENSXMAG00000001862puf60b10086.180ENSPCIG00000020270PUF609885.029Phascolarctos_cinereus
ENSXMAG00000001862puf60b10081.942ENSPFOG00000011118-10081.250Poecilia_formosa
ENSXMAG00000001862puf60b100100.000ENSPFOG00000019217puf60b10099.457Poecilia_formosa
ENSXMAG00000001862puf60b10082.330ENSPLAG00000017025-9281.250Poecilia_latipinna
ENSXMAG00000001862puf60b100100.000ENSPLAG00000010754puf60b100100.000Poecilia_latipinna
ENSXMAG00000001862puf60b100100.000ENSPMEG00000000838puf60b100100.000Poecilia_mexicana
ENSXMAG00000001862puf60b10082.136ENSPMEG00000009767-9281.439Poecilia_mexicana
ENSXMAG00000001862puf60b10097.343ENSPREG00000005440puf60b10097.984Poecilia_reticulata
ENSXMAG00000001862puf60b8183.886ENSPPYG00000018951-9582.464Pongo_abelii
ENSXMAG00000001862puf60b8185.545ENSPCAG00000014837PUF6010084.123Procavia_capensis
ENSXMAG00000001862puf60b10085.988ENSPCOG00000027981PUF6010083.364Propithecus_coquereli
ENSXMAG00000001862puf60b10096.203ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSXMAG00000001862puf60b10083.463ENSPNYG00000004273-10082.353Pundamilia_nyererei
ENSXMAG00000001862puf60b10098.051ENSPNYG00000002556puf60b10098.051Pundamilia_nyererei
ENSXMAG00000001862puf60b10084.720ENSPNAG00000019909puf60a9987.723Pygocentrus_nattereri
ENSXMAG00000001862puf60b10080.117ENSPNAG00000019415puf60b9280.777Pygocentrus_nattereri
ENSXMAG00000001862puf60b10086.564ENSRNOG00000009960Puf609384.820Rattus_norvegicus
ENSXMAG00000001862puf60b10085.988ENSRBIG00000035274PUF6010083.364Rhinopithecus_bieti
ENSXMAG00000001862puf60b10085.988ENSRROG00000029360PUF6010083.364Rhinopithecus_roxellana
ENSXMAG00000001862puf60b10084.645ENSSBOG00000027089PUF609982.176Saimiri_boliviensis_boliviensis
ENSXMAG00000001862puf60b9085.714ENSSHAG00000006668PUF609083.579Sarcophilus_harrisii
ENSXMAG00000001862puf60b9589.817ENSSFOG00015019371puf60a9889.817Scleropages_formosus
ENSXMAG00000001862puf60b10083.044ENSSFOG00015019619puf60b9985.772Scleropages_formosus
ENSXMAG00000001862puf60b7698.976ENSSMAG00000016381puf60b7898.366Scophthalmus_maximus
ENSXMAG00000001862puf60b9783.735ENSSDUG00000007048-9783.789Seriola_dumerili
ENSXMAG00000001862puf60b10096.374ENSSDUG00000009935puf60b9996.415Seriola_dumerili
ENSXMAG00000001862puf60b10081.538ENSSLDG00000007366-9981.766Seriola_lalandi_dorsalis
ENSXMAG00000001862puf60b10098.441ENSSLDG00000024011puf60b10095.825Seriola_lalandi_dorsalis
ENSXMAG00000001862puf60b6578.171ENSSPUG00000013518PUF609278.788Sphenodon_punctatus
ENSXMAG00000001862puf60b10083.333ENSSPAG00000020285-10083.721Stegastes_partitus
ENSXMAG00000001862puf60b10095.446ENSSPAG00000012144puf60b10095.446Stegastes_partitus
ENSXMAG00000001862puf60b10086.180ENSSSCG00000038800PUF6010083.012Sus_scrofa
ENSXMAG00000001862puf60b10083.716ENSTGUG00000012797-10082.510Taeniopygia_guttata
ENSXMAG00000001862puf60b10097.466ENSTRUG00000005420puf60b10094.877Takifugu_rubripes
ENSXMAG00000001862puf60b10078.988ENSTRUG00000008843-10081.087Takifugu_rubripes
ENSXMAG00000001862puf60b10079.727ENSTNIG00000003069-9979.922Tetraodon_nigroviridis
ENSXMAG00000001862puf60b10097.271ENSTNIG00000013675puf60b9997.303Tetraodon_nigroviridis
ENSXMAG00000001862puf60b7766.382ENSTBEG00000001899-10067.236Tupaia_belangeri
ENSXMAG00000001862puf60b5586.254ENSTBEG00000002751-9785.911Tupaia_belangeri
ENSXMAG00000001862puf60b10084.837ENSTTRG00000017088PUF6010084.069Tursiops_truncatus
ENSXMAG00000001862puf60b10086.180ENSUAMG00000024917PUF6010083.551Ursus_americanus
ENSXMAG00000001862puf60b10081.190ENSUMAG00000000272PUF609379.127Ursus_maritimus
ENSXMAG00000001862puf60b10086.180ENSVVUG00000022527PUF6010085.029Vulpes_vulpes
ENSXMAG00000001862puf60b10083.877ENSXETG00000012469puf609981.890Xenopus_tropicalis
ENSXMAG00000001862puf60b10096.686ENSXCOG00000012355puf60b100100.000Xiphophorus_couchianus
ENSXMAG00000001862puf60b10079.029ENSXMAG00000010507-9981.151Xiphophorus_maculatus

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