EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000001998 (Gene tree)
Gene ID: 102224401
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 6724 bases
Position: chr21:7099203-7105926
Accession: 102224401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002006	GTP_EFTU	PF00009.27	1.2e-53	1	1
ENSXMAP00000002006	MMR_HSR1	PF01926.23	7.1e-08	1	1
ENSXMAP00000002006	GTP_EFTU_D2	PF03144.25	1.3e-12	1	1
ENSXMAP00000002006	GTP_EFTU_D3	PF03143.17	3.5e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000002011	-	1701	XM_005798542	ENSXMAP00000002006	457 (aa)	XP_005798599	M3ZIG4

Gene Model

Click here to download ENSXMAG00000001998's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000001998's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000001998	si:dkey-37o8.1	98	90.625	ENSAPOG00000016459	si:dkey-37o8.1	98	90.625	Acanthochromis_polyacanthus
ENSXMAG00000001998	si:dkey-37o8.1	98	86.755	ENSACIG00000020985	si:dkey-37o8.1	85	86.755	Amphilophus_citrinellus
ENSXMAG00000001998	si:dkey-37o8.1	100	89.934	ENSAOCG00000002663	si:dkey-37o8.1	100	89.934	Amphiprion_ocellaris
ENSXMAG00000001998	si:dkey-37o8.1	100	89.934	ENSAPEG00000012670	si:dkey-37o8.1	100	89.934	Amphiprion_percula
ENSXMAG00000001998	si:dkey-37o8.1	92	90.995	ENSATEG00000002217	si:dkey-37o8.1	99	90.995	Anabas_testudineus
ENSXMAG00000001998	si:dkey-37o8.1	98	89.955	ENSACLG00000003519	si:dkey-37o8.1	98	89.955	Astatotilapia_calliptera
ENSXMAG00000001998	si:dkey-37o8.1	100	84.279	ENSAMXG00000002728	si:dkey-37o8.1	100	84.279	Astyanax_mexicanus
ENSXMAG00000001998	si:dkey-37o8.1	99	71.840	ENSCPBG00000020570	-	89	72.000	Chrysemys_picta_bellii
ENSXMAG00000001998	si:dkey-37o8.1	98	84.956	ENSCSEG00000019807	si:dkey-37o8.1	98	84.245	Cynoglossus_semilaevis
ENSXMAG00000001998	si:dkey-37o8.1	99	93.626	ENSCVAG00000009828	si:dkey-37o8.1	99	93.626	Cyprinodon_variegatus
ENSXMAG00000001998	si:dkey-37o8.1	100	81.441	ENSDARG00000071727	si:dkey-37o8.1	95	81.441	Danio_rerio
ENSXMAG00000001998	si:dkey-37o8.1	100	84.061	ENSELUG00000007495	si:dkey-37o8.1	100	84.061	Esox_lucius
ENSXMAG00000001998	si:dkey-37o8.1	100	94.092	ENSFHEG00000017452	si:dkey-37o8.1	100	94.092	Fundulus_heteroclitus
ENSXMAG00000001998	si:dkey-37o8.1	99	79.956	ENSGMOG00000006122	si:dkey-37o8.1	100	79.956	Gadus_morhua
ENSXMAG00000001998	si:dkey-37o8.1	98	91.071	ENSGAFG00000000367	si:dkey-37o8.1	99	91.071	Gambusia_affinis
ENSXMAG00000001998	si:dkey-37o8.1	100	87.090	ENSGACG00000004505	si:dkey-37o8.1	100	87.090	Gasterosteus_aculeatus
ENSXMAG00000001998	si:dkey-37o8.1	96	73.864	ENSGAGG00000007724	-	93	77.885	Gopherus_agassizii
ENSXMAG00000001998	si:dkey-37o8.1	98	89.732	ENSHBUG00000015515	si:dkey-37o8.1	98	89.732	Haplochromis_burtoni
ENSXMAG00000001998	si:dkey-37o8.1	99	80.266	ENSHCOG00000001215	si:dkey-37o8.1	100	80.266	Hippocampus_comes
ENSXMAG00000001998	si:dkey-37o8.1	100	82.969	ENSIPUG00000004067	si:dkey-37o8.1	100	82.969	Ictalurus_punctatus
ENSXMAG00000001998	si:dkey-37o8.1	100	92.123	ENSKMAG00000015910	si:dkey-37o8.1	100	92.123	Kryptolebias_marmoratus
ENSXMAG00000001998	si:dkey-37o8.1	99	89.800	ENSLBEG00000021334	si:dkey-37o8.1	90	89.800	Labrus_bergylta
ENSXMAG00000001998	si:dkey-37o8.1	99	74.890	ENSLACG00000003948	si:dkey-37o8.1	99	74.890	Latimeria_chalumnae
ENSXMAG00000001998	si:dkey-37o8.1	100	80.174	ENSLOCG00000011245	si:dkey-37o8.1	100	80.174	Lepisosteus_oculatus
ENSXMAG00000001998	si:dkey-37o8.1	99	74.558	ENSMAMG00000009907	si:dkey-37o8.1	95	74.558	Mastacembelus_armatus
ENSXMAG00000001998	si:dkey-37o8.1	98	89.955	ENSMZEG00005018358	si:dkey-37o8.1	98	89.955	Maylandia_zebra
ENSXMAG00000001998	si:dkey-37o8.1	98	89.062	ENSMMOG00000004111	si:dkey-37o8.1	98	89.062	Mola_mola
ENSXMAG00000001998	si:dkey-37o8.1	96	80.365	ENSMALG00000017152	si:dkey-37o8.1	99	80.365	Monopterus_albus
ENSXMAG00000001998	si:dkey-37o8.1	98	89.509	ENSNBRG00000013552	si:dkey-37o8.1	98	89.509	Neolamprologus_brichardi
ENSXMAG00000001998	si:dkey-37o8.1	98	89.955	ENSONIG00000006165	si:dkey-37o8.1	98	89.955	Oreochromis_niloticus
ENSXMAG00000001998	si:dkey-37o8.1	100	90.591	ENSORLG00000019066	si:dkey-37o8.1	100	90.591	Oryzias_latipes
ENSXMAG00000001998	si:dkey-37o8.1	100	90.591	ENSORLG00020008094	si:dkey-37o8.1	100	90.591	Oryzias_latipes_hni
ENSXMAG00000001998	si:dkey-37o8.1	100	90.810	ENSORLG00015008410	si:dkey-37o8.1	100	90.810	Oryzias_latipes_hsok
ENSXMAG00000001998	si:dkey-37o8.1	100	90.810	ENSOMEG00000001868	si:dkey-37o8.1	100	90.810	Oryzias_melastigma
ENSXMAG00000001998	si:dkey-37o8.1	100	82.353	ENSPKIG00000017246	si:dkey-37o8.1	100	82.353	Paramormyrops_kingsleyae
ENSXMAG00000001998	si:dkey-37o8.1	59	66.788	ENSPSIG00000008080	-	96	66.788	Pelodiscus_sinensis
ENSXMAG00000001998	si:dkey-37o8.1	100	96.937	ENSPFOG00000013173	si:dkey-37o8.1	100	96.937	Poecilia_formosa
ENSXMAG00000001998	si:dkey-37o8.1	100	95.405	ENSPLAG00000010405	si:dkey-37o8.1	100	95.405	Poecilia_latipinna
ENSXMAG00000001998	si:dkey-37o8.1	100	96.937	ENSPMEG00000015233	si:dkey-37o8.1	100	96.937	Poecilia_mexicana
ENSXMAG00000001998	si:dkey-37o8.1	99	96.696	ENSPREG00000006280	si:dkey-37o8.1	100	96.696	Poecilia_reticulata
ENSXMAG00000001998	si:dkey-37o8.1	98	89.286	ENSPNYG00000002059	si:dkey-37o8.1	98	89.286	Pundamilia_nyererei
ENSXMAG00000001998	si:dkey-37o8.1	100	84.061	ENSPNAG00000009990	si:dkey-37o8.1	100	84.061	Pygocentrus_nattereri
ENSXMAG00000001998	si:dkey-37o8.1	99	81.678	ENSSFOG00015019070	si:dkey-37o8.1	99	81.678	Scleropages_formosus
ENSXMAG00000001998	si:dkey-37o8.1	99	90.687	ENSSMAG00000016143	si:dkey-37o8.1	99	90.687	Scophthalmus_maximus
ENSXMAG00000001998	si:dkey-37o8.1	100	91.028	ENSSDUG00000009163	si:dkey-37o8.1	100	91.028	Seriola_dumerili
ENSXMAG00000001998	si:dkey-37o8.1	100	90.810	ENSSLDG00000023761	si:dkey-37o8.1	100	90.810	Seriola_lalandi_dorsalis
ENSXMAG00000001998	si:dkey-37o8.1	99	70.861	ENSSPUG00000007467	-	99	70.861	Sphenodon_punctatus
ENSXMAG00000001998	si:dkey-37o8.1	99	90.708	ENSSPAG00000013856	si:dkey-37o8.1	99	90.708	Stegastes_partitus
ENSXMAG00000001998	si:dkey-37o8.1	97	89.888	ENSTRUG00000009006	si:dkey-37o8.1	99	89.888	Takifugu_rubripes
ENSXMAG00000001998	si:dkey-37o8.1	98	89.732	ENSTNIG00000017138	si:dkey-37o8.1	97	89.732	Tetraodon_nigroviridis
ENSXMAG00000001998	si:dkey-37o8.1	96	75.626	ENSXETG00000017744	42Sp50	97	74.279	Xenopus_tropicalis
ENSXMAG00000001998	si:dkey-37o8.1	99	99.119	ENSXCOG00000012296	si:dkey-37o8.1	100	100.000	Xiphophorus_couchianus