EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002140 (Gene tree)
Gene ID: 102220206
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 24507 bases
Position: chr8:24244892-24269398
Accession: 102220206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002151	ResIII	PF04851.15	1.1e-07	1	1
ENSXMAP00000021148	ResIII	PF04851.15	1.2e-07	1	1
ENSXMAP00000031142	ResIII	PF04851.15	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000042145	-	6966	XM_023338457	ENSXMAP00000021148	1405 (aa)	XP_023194225	UPI000C6E69A3
ENSXMAT00000030875	-	7108	-	ENSXMAP00000031142	1433 (aa)	-	-
ENSXMAT00000002156	-	4062	-	ENSXMAP00000002151	1353 (aa)	-	M3ZIV9

Gene Model

Click here to download ENSXMAG00000002140's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002140's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002140	sbno1	99	75.930	ENSG00000139697	SBNO1	99	75.952	Homo_sapiens
ENSXMAG00000002140	sbno1	85	94.696	ENSAPOG00000003196	sbno1	98	94.696	Acanthochromis_polyacanthus
ENSXMAG00000002140	sbno1	99	75.874	ENSAMEG00000015151	SBNO1	99	75.843	Ailuropoda_melanoleuca
ENSXMAG00000002140	sbno1	100	86.742	ENSACIG00000008088	sbno1	99	87.545	Amphilophus_citrinellus
ENSXMAG00000002140	sbno1	100	90.760	ENSAOCG00000014859	sbno1	99	91.258	Amphiprion_ocellaris
ENSXMAG00000002140	sbno1	100	90.689	ENSAPEG00000006069	sbno1	99	91.187	Amphiprion_percula
ENSXMAG00000002140	sbno1	100	91.832	ENSATEG00000006667	sbno1	100	91.761	Anabas_testudineus
ENSXMAG00000002140	sbno1	98	76.758	ENSAPLG00000015674	SBNO1	99	76.782	Anas_platyrhynchos
ENSXMAG00000002140	sbno1	98	75.285	ENSACAG00000015441	SBNO1	88	76.125	Anolis_carolinensis
ENSXMAG00000002140	sbno1	95	83.666	ENSANAG00000029958	-	99	83.154	Aotus_nancymaae
ENSXMAG00000002140	sbno1	99	88.593	ENSACLG00000024913	sbno1	100	88.444	Astatotilapia_calliptera
ENSXMAG00000002140	sbno1	100	81.857	ENSAMXG00000019473	sbno1	100	82.353	Astyanax_mexicanus
ENSXMAG00000002140	sbno1	100	76.101	ENSBTAG00000020505	SBNO1	99	76.844	Bos_taurus
ENSXMAG00000002140	sbno1	99	76.301	ENSCJAG00000016599	SBNO1	99	76.090	Callithrix_jacchus
ENSXMAG00000002140	sbno1	99	76.014	ENSCAFG00000007503	SBNO1	99	76.723	Canis_familiaris
ENSXMAG00000002140	sbno1	95	80.790	ENSCAFG00020015363	SBNO1	99	80.969	Canis_lupus_dingo
ENSXMAG00000002140	sbno1	95	83.154	ENSCHIG00000008382	SBNO1	99	83.154	Capra_hircus
ENSXMAG00000002140	sbno1	99	76.599	ENSTSYG00000012749	SBNO1	99	77.117	Carlito_syrichta
ENSXMAG00000002140	sbno1	91	83.303	ENSCAPG00000000384	SBNO1	99	83.303	Cavia_aperea
ENSXMAG00000002140	sbno1	95	83.303	ENSCPOG00000008109	SBNO1	99	83.303	Cavia_porcellus
ENSXMAG00000002140	sbno1	99	72.012	ENSCCAG00000035316	SBNO1	99	72.389	Cebus_capucinus
ENSXMAG00000002140	sbno1	92	83.483	ENSCATG00000008239	SBNO1	99	83.483	Cercocebus_atys
ENSXMAG00000002140	sbno1	95	83.303	ENSCLAG00000008995	SBNO1	99	83.303	Chinchilla_lanigera
ENSXMAG00000002140	sbno1	85	82.036	ENSCSAG00000002064	SBNO1	99	82.100	Chlorocebus_sabaeus
ENSXMAG00000002140	sbno1	96	73.414	ENSCHOG00000008814	SBNO1	96	73.521	Choloepus_hoffmanni
ENSXMAG00000002140	sbno1	98	76.509	ENSCPBG00000025968	SBNO1	98	77.199	Chrysemys_picta_bellii
ENSXMAG00000002140	sbno1	99	72.390	ENSCANG00000042688	-	99	72.273	Colobus_angolensis_palliatus
ENSXMAG00000002140	sbno1	95	82.079	ENSCGRG00001017470	Sbno1	99	82.079	Cricetulus_griseus_chok1gshd
ENSXMAG00000002140	sbno1	95	82.079	ENSCGRG00000004756	Sbno1	99	82.079	Cricetulus_griseus_crigri
ENSXMAG00000002140	sbno1	100	88.131	ENSCSEG00000011919	sbno1	100	88.060	Cynoglossus_semilaevis
ENSXMAG00000002140	sbno1	100	95.235	ENSCVAG00000007038	sbno1	100	95.021	Cyprinodon_variegatus
ENSXMAG00000002140	sbno1	99	82.206	ENSDARG00000099080	sbno1	99	82.374	Danio_rerio
ENSXMAG00000002140	sbno1	99	78.327	ENSDNOG00000017147	SBNO1	96	78.327	Dasypus_novemcinctus
ENSXMAG00000002140	sbno1	99	71.198	ENSDORG00000015261	Sbno1	99	80.828	Dipodomys_ordii
ENSXMAG00000002140	sbno1	93	72.013	ENSETEG00000005620	SBNO1	93	72.013	Echinops_telfairi
ENSXMAG00000002140	sbno1	74	64.575	ENSEBUG00000013823	sbno1	93	63.046	Eptatretus_burgeri
ENSXMAG00000002140	sbno1	51	73.177	ENSEASG00005012595	-	92	75.882	Equus_asinus_asinus
ENSXMAG00000002140	sbno1	99	76.120	ENSECAG00000006127	SBNO1	99	76.834	Equus_caballus
ENSXMAG00000002140	sbno1	81	76.940	ENSEEUG00000003793	SBNO1	82	76.760	Erinaceus_europaeus
ENSXMAG00000002140	sbno1	100	83.215	ENSELUG00000002886	sbno1	99	83.003	Esox_lucius
ENSXMAG00000002140	sbno1	99	76.120	ENSFCAG00000015331	SBNO1	99	75.882	Felis_catus
ENSXMAG00000002140	sbno1	98	76.901	ENSFALG00000009273	SBNO1	99	76.782	Ficedula_albicollis
ENSXMAG00000002140	sbno1	95	80.797	ENSFDAG00000014232	SBNO1	99	80.251	Fukomys_damarensis
ENSXMAG00000002140	sbno1	100	95.235	ENSFHEG00000007360	sbno1	100	95.021	Fundulus_heteroclitus
ENSXMAG00000002140	sbno1	96	84.195	ENSGMOG00000018229	sbno1	99	85.188	Gadus_morhua
ENSXMAG00000002140	sbno1	88	76.850	ENSGALG00000003392	SBNO1	99	76.874	Gallus_gallus
ENSXMAG00000002140	sbno1	100	98.363	ENSGAFG00000003960	sbno1	100	98.363	Gambusia_affinis
ENSXMAG00000002140	sbno1	95	89.422	ENSGACG00000015633	sbno1	100	89.272	Gasterosteus_aculeatus
ENSXMAG00000002140	sbno1	97	77.021	ENSGAGG00000001065	SBNO1	99	83.039	Gopherus_agassizii
ENSXMAG00000002140	sbno1	95	83.303	ENSGGOG00000015000	SBNO1	99	83.303	Gorilla_gorilla
ENSXMAG00000002140	sbno1	99	82.262	ENSHBUG00000011910	sbno1	100	81.919	Haplochromis_burtoni
ENSXMAG00000002140	sbno1	95	84.029	ENSHGLG00000014165	-	99	83.633	Heterocephalus_glaber_female
ENSXMAG00000002140	sbno1	91	92.079	ENSHCOG00000003246	sbno1	95	92.079	Hippocampus_comes
ENSXMAG00000002140	sbno1	100	81.825	ENSIPUG00000015830	Sbno1	98	82.644	Ictalurus_punctatus
ENSXMAG00000002140	sbno1	95	83.303	ENSSTOG00000023221	SBNO1	99	83.303	Ictidomys_tridecemlineatus
ENSXMAG00000002140	sbno1	99	75.874	ENSJJAG00000001741	Sbno1	99	79.533	Jaculus_jaculus
ENSXMAG00000002140	sbno1	99	93.581	ENSKMAG00000009696	sbno1	99	93.581	Kryptolebias_marmoratus
ENSXMAG00000002140	sbno1	100	89.227	ENSLBEG00000007623	sbno1	100	89.298	Labrus_bergylta
ENSXMAG00000002140	sbno1	100	72.676	ENSLACG00000017227	SBNO1	99	75.219	Latimeria_chalumnae
ENSXMAG00000002140	sbno1	100	81.844	ENSLOCG00000005725	sbno1	97	81.492	Lepisosteus_oculatus
ENSXMAG00000002140	sbno1	99	75.436	ENSLAFG00000002135	SBNO1	99	75.651	Loxodonta_africana
ENSXMAG00000002140	sbno1	95	80.107	ENSMFAG00000031429	SBNO1	99	80.107	Macaca_fascicularis
ENSXMAG00000002140	sbno1	95	80.107	ENSMMUG00000011496	SBNO1	99	80.107	Macaca_mulatta
ENSXMAG00000002140	sbno1	95	83.303	ENSMLEG00000033260	SBNO1	99	83.303	Mandrillus_leucophaeus
ENSXMAG00000002140	sbno1	100	91.388	ENSMAMG00000005473	sbno1	100	91.174	Mastacembelus_armatus
ENSXMAG00000002140	sbno1	98	76.962	ENSMGAG00000003274	SBNO1	99	76.820	Meleagris_gallopavo
ENSXMAG00000002140	sbno1	50	74.574	ENSMAUG00000004834	-	98	76.947	Mesocricetus_auratus
ENSXMAG00000002140	sbno1	95	80.762	ENSMICG00000006573	-	99	80.287	Microcebus_murinus
ENSXMAG00000002140	sbno1	95	82.796	ENSMOCG00000009390	Sbno1	99	82.796	Microtus_ochrogaster
ENSXMAG00000002140	sbno1	100	84.149	ENSMMOG00000008691	sbno1	99	84.599	Mola_mola
ENSXMAG00000002140	sbno1	99	76.053	ENSMODG00000012470	SBNO1	98	76.076	Monodelphis_domestica
ENSXMAG00000002140	sbno1	100	90.270	ENSMALG00000001056	sbno1	100	90.270	Monopterus_albus
ENSXMAG00000002140	sbno1	99	75.630	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.667	Mus_caroli
ENSXMAG00000002140	sbno1	99	75.717	ENSMUSG00000038095	Sbno1	94	91.667	Mus_musculus
ENSXMAG00000002140	sbno1	99	76.412	MGP_PahariEiJ_G0024329	Sbno1	95	91.667	Mus_pahari
ENSXMAG00000002140	sbno1	99	75.647	MGP_SPRETEiJ_G0028747	Sbno1	95	91.667	Mus_spretus
ENSXMAG00000002140	sbno1	99	76.140	ENSMPUG00000001658	SBNO1	99	76.023	Mustela_putorius_furo
ENSXMAG00000002140	sbno1	99	75.896	ENSMLUG00000017159	SBNO1	99	75.721	Myotis_lucifugus
ENSXMAG00000002140	sbno1	92	84.375	ENSNGAG00000012620	Sbno1	98	84.375	Nannospalax_galili
ENSXMAG00000002140	sbno1	99	87.555	ENSNBRG00000019189	sbno1	100	87.261	Neolamprologus_brichardi
ENSXMAG00000002140	sbno1	99	73.440	ENSNLEG00000001502	SBNO1	99	75.583	Nomascus_leucogenys
ENSXMAG00000002140	sbno1	62	72.956	ENSMEUG00000008768	-	93	73.585	Notamacropus_eugenii
ENSXMAG00000002140	sbno1	99	75.369	ENSOPRG00000011054	SBNO1	99	75.369	Ochotona_princeps
ENSXMAG00000002140	sbno1	95	83.483	ENSODEG00000009997	SBNO1	99	83.483	Octodon_degus
ENSXMAG00000002140	sbno1	100	90.341	ENSONIG00000015348	sbno1	100	90.412	Oreochromis_niloticus
ENSXMAG00000002140	sbno1	98	75.391	ENSOCUG00000002441	SBNO1	95	75.233	Oryctolagus_cuniculus
ENSXMAG00000002140	sbno1	100	89.631	ENSORLG00000001593	sbno1	100	89.631	Oryzias_latipes
ENSXMAG00000002140	sbno1	100	89.908	ENSORLG00020015216	sbno1	100	89.979	Oryzias_latipes_hni
ENSXMAG00000002140	sbno1	100	89.908	ENSORLG00015002726	sbno1	100	89.979	Oryzias_latipes_hsok
ENSXMAG00000002140	sbno1	100	89.118	ENSOMEG00000019313	sbno1	100	89.118	Oryzias_melastigma
ENSXMAG00000002140	sbno1	50	72.301	ENSOGAG00000010781	-	98	77.039	Otolemur_garnettii
ENSXMAG00000002140	sbno1	100	75.700	ENSOARG00000004404	SBNO1	99	76.003	Ovis_aries
ENSXMAG00000002140	sbno1	95	83.303	ENSPPAG00000024635	SBNO1	99	83.303	Pan_paniscus
ENSXMAG00000002140	sbno1	99	76.120	ENSPPRG00000022092	SBNO1	99	75.882	Panthera_pardus
ENSXMAG00000002140	sbno1	99	76.104	ENSPTIG00000017803	SBNO1	99	75.901	Panthera_tigris_altaica
ENSXMAG00000002140	sbno1	95	83.303	ENSPTRG00000005597	SBNO1	99	83.303	Pan_troglodytes
ENSXMAG00000002140	sbno1	95	83.303	ENSPANG00000011640	SBNO1	99	83.303	Papio_anubis
ENSXMAG00000002140	sbno1	100	81.201	ENSPKIG00000001441	sbno1	100	80.946	Paramormyrops_kingsleyae
ENSXMAG00000002140	sbno1	98	76.378	ENSPSIG00000009572	-	99	77.093	Pelodiscus_sinensis
ENSXMAG00000002140	sbno1	92	73.592	ENSPSIG00000009256	-	99	73.511	Pelodiscus_sinensis
ENSXMAG00000002140	sbno1	95	82.616	ENSPEMG00000016087	Sbno1	99	82.616	Peromyscus_maniculatus_bairdii
ENSXMAG00000002140	sbno1	99	76.518	ENSPCIG00000010985	SBNO1	99	76.518	Phascolarctos_cinereus
ENSXMAG00000002140	sbno1	100	98.434	ENSPFOG00000005069	sbno1	100	98.434	Poecilia_formosa
ENSXMAG00000002140	sbno1	100	98.505	ENSPLAG00000015015	sbno1	100	98.505	Poecilia_latipinna
ENSXMAG00000002140	sbno1	100	98.577	ENSPMEG00000021212	sbno1	100	98.577	Poecilia_mexicana
ENSXMAG00000002140	sbno1	100	97.722	ENSPREG00000017746	sbno1	100	97.722	Poecilia_reticulata
ENSXMAG00000002140	sbno1	99	75.913	ENSPPYG00000005084	SBNO1	99	76.006	Pongo_abelii
ENSXMAG00000002140	sbno1	89	69.444	ENSPCAG00000008634	SBNO1	88	69.149	Procavia_capensis
ENSXMAG00000002140	sbno1	95	83.607	ENSPCOG00000024277	SBNO1	99	83.607	Propithecus_coquereli
ENSXMAG00000002140	sbno1	87	83.698	ENSPVAG00000015304	SBNO1	87	83.698	Pteropus_vampyrus
ENSXMAG00000002140	sbno1	100	90.270	ENSPNYG00000004291	sbno1	100	90.341	Pundamilia_nyererei
ENSXMAG00000002140	sbno1	100	82.082	ENSPNAG00000015622	sbno1	100	81.799	Pygocentrus_nattereri
ENSXMAG00000002140	sbno1	95	82.796	ENSRNOG00000001064	Sbno1	99	82.944	Rattus_norvegicus
ENSXMAG00000002140	sbno1	95	83.303	ENSRROG00000034230	SBNO1	99	83.303	Rhinopithecus_roxellana
ENSXMAG00000002140	sbno1	97	75.684	ENSSBOG00000015422	SBNO1	98	75.532	Saimiri_boliviensis_boliviensis
ENSXMAG00000002140	sbno1	100	81.921	ENSSFOG00015019025	sbno1	100	81.685	Scleropages_formosus
ENSXMAG00000002140	sbno1	100	90.612	ENSSMAG00000013640	sbno1	100	90.541	Scophthalmus_maximus
ENSXMAG00000002140	sbno1	100	92.045	ENSSDUG00000023480	sbno1	100	91.974	Seriola_dumerili
ENSXMAG00000002140	sbno1	100	91.761	ENSSLDG00000007928	sbno1	100	91.690	Seriola_lalandi_dorsalis
ENSXMAG00000002140	sbno1	89	81.290	ENSSARG00000002594	SBNO1	89	81.129	Sorex_araneus
ENSXMAG00000002140	sbno1	98	76.208	ENSSPUG00000012640	SBNO1	99	76.557	Sphenodon_punctatus
ENSXMAG00000002140	sbno1	100	91.690	ENSSPAG00000016244	sbno1	100	91.690	Stegastes_partitus
ENSXMAG00000002140	sbno1	99	76.471	ENSSSCG00000009776	SBNO1	99	76.754	Sus_scrofa
ENSXMAG00000002140	sbno1	98	76.707	ENSTGUG00000005380	SBNO1	99	76.641	Taeniopygia_guttata
ENSXMAG00000002140	sbno1	99	86.558	ENSTRUG00000018490	sbno1	99	86.700	Takifugu_rubripes
ENSXMAG00000002140	sbno1	57	83.292	ENSTNIG00000013506	sbno1	99	83.333	Tetraodon_nigroviridis
ENSXMAG00000002140	sbno1	99	76.120	ENSUAMG00000019671	SBNO1	99	75.882	Ursus_americanus
ENSXMAG00000002140	sbno1	99	76.120	ENSUMAG00000004002	SBNO1	99	75.882	Ursus_maritimus
ENSXMAG00000002140	sbno1	95	71.125	ENSVPAG00000007024	SBNO1	95	71.111	Vicugna_pacos
ENSXMAG00000002140	sbno1	99	76.120	ENSVVUG00000027807	SBNO1	99	76.003	Vulpes_vulpes
ENSXMAG00000002140	sbno1	99	72.816	ENSXETG00000031930	SBNO1	92	80.592	Xenopus_tropicalis
ENSXMAG00000002140	sbno1	89	95.516	ENSXCOG00000011607	sbno1	99	95.390	Xiphophorus_couchianus