EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002227 (Gene tree)
Gene ID: 102233524
Gene Symbol: trnt1
Alias: zgc:86645
Full Name: tRNA nucleotidyl transferase 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 12140 bases
Position: chr20:29984555-29996694
Accession: 102233524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002228	PolyA_pol	PF01743.20	3e-34	1	1
ENSXMAP00000041236	PolyA_pol	PF01743.20	3e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000002233	-	2320	XM_005808484	ENSXMAP00000002228	425 (aa)	XP_005808541	M3ZJ36
ENSXMAT00000021026	-	2244	XM_023353430	ENSXMAP00000041236	425 (aa)	XP_023209198	UPI000293DB71

Gene Model

Click here to download ENSXMAG00000002227's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002227	trnt1	99	67.139	ENSG00000072756	TRNT1	96	67.139	Homo_sapiens
ENSXMAG00000002227	trnt1	99	83.059	ENSAPOG00000013687	trnt1	99	83.059	Acanthochromis_polyacanthus
ENSXMAG00000002227	trnt1	96	67.892	ENSAMEG00000014520	TRNT1	94	67.892	Ailuropoda_melanoleuca
ENSXMAG00000002227	trnt1	99	84.235	ENSACIG00000021706	trnt1	99	84.235	Amphilophus_citrinellus
ENSXMAG00000002227	trnt1	99	84.977	ENSAOCG00000024612	trnt1	99	84.977	Amphiprion_ocellaris
ENSXMAG00000002227	trnt1	96	77.616	ENSAPEG00000022627	trnt1	95	77.616	Amphiprion_percula
ENSXMAG00000002227	trnt1	95	86.600	ENSATEG00000008928	trnt1	99	86.600	Anabas_testudineus
ENSXMAG00000002227	trnt1	90	72.585	ENSAPLG00000004258	TRNT1	95	72.585	Anas_platyrhynchos
ENSXMAG00000002227	trnt1	96	66.993	ENSACAG00000005657	TRNT1	93	66.993	Anolis_carolinensis
ENSXMAG00000002227	trnt1	96	68.473	ENSANAG00000024802	TRNT1	94	68.473	Aotus_nancymaae
ENSXMAG00000002227	trnt1	100	81.967	ENSACLG00000022227	trnt1	100	81.967	Astatotilapia_calliptera
ENSXMAG00000002227	trnt1	99	77.103	ENSAMXG00000003960	trnt1	99	77.103	Astyanax_mexicanus
ENSXMAG00000002227	trnt1	99	65.248	ENSBTAG00000019534	TRNT1	96	65.248	Bos_taurus
ENSXMAG00000002227	trnt1	95	43.133	WBGene00010089	hpo-31	94	43.133	Caenorhabditis_elegans
ENSXMAG00000002227	trnt1	96	68.719	ENSCJAG00000015466	TRNT1	94	68.719	Callithrix_jacchus
ENSXMAG00000002227	trnt1	96	68.473	ENSCAFG00000005985	TRNT1	93	68.473	Canis_familiaris
ENSXMAG00000002227	trnt1	96	68.473	ENSCAFG00020014746	TRNT1	93	68.473	Canis_lupus_dingo
ENSXMAG00000002227	trnt1	99	66.667	ENSCHIG00000007030	TRNT1	95	66.667	Capra_hircus
ENSXMAG00000002227	trnt1	96	69.458	ENSTSYG00000013390	TRNT1	94	69.458	Carlito_syrichta
ENSXMAG00000002227	trnt1	88	54.521	ENSCAPG00000006891	TRNT1	99	54.111	Cavia_aperea
ENSXMAG00000002227	trnt1	99	65.485	ENSCPOG00000007849	TRNT1	96	65.485	Cavia_porcellus
ENSXMAG00000002227	trnt1	96	67.561	ENSCCAG00000002919	TRNT1	98	68.702	Cebus_capucinus
ENSXMAG00000002227	trnt1	96	69.458	ENSCATG00000031985	TRNT1	92	69.458	Cercocebus_atys
ENSXMAG00000002227	trnt1	96	67.892	ENSCLAG00000005186	TRNT1	84	78.771	Chinchilla_lanigera
ENSXMAG00000002227	trnt1	96	69.458	ENSCSAG00000011052	TRNT1	94	69.458	Chlorocebus_sabaeus
ENSXMAG00000002227	trnt1	80	78.409	ENSCHOG00000005712	TRNT1	78	78.409	Choloepus_hoffmanni
ENSXMAG00000002227	trnt1	96	70.343	ENSCPBG00000017636	TRNT1	93	70.343	Chrysemys_picta_bellii
ENSXMAG00000002227	trnt1	95	40.247	ENSCING00000007069	-	99	40.247	Ciona_intestinalis
ENSXMAG00000002227	trnt1	95	41.379	ENSCSAVG00000007494	-	95	41.379	Ciona_savignyi
ENSXMAG00000002227	trnt1	96	69.704	ENSCANG00000039030	TRNT1	94	69.704	Colobus_angolensis_palliatus
ENSXMAG00000002227	trnt1	96	68.873	ENSCGRG00001009998	Trnt1	94	68.873	Cricetulus_griseus_chok1gshd
ENSXMAG00000002227	trnt1	96	68.873	ENSCGRG00000013410	Trnt1	86	78.571	Cricetulus_griseus_crigri
ENSXMAG00000002227	trnt1	100	79.812	ENSCSEG00000008157	trnt1	100	79.812	Cynoglossus_semilaevis
ENSXMAG00000002227	trnt1	99	87.972	ENSCVAG00000019770	trnt1	99	87.972	Cyprinodon_variegatus
ENSXMAG00000002227	trnt1	99	77.934	ENSDARG00000075297	trnt1	99	77.934	Danio_rerio
ENSXMAG00000002227	trnt1	96	69.853	ENSDNOG00000008837	TRNT1	94	69.853	Dasypus_novemcinctus
ENSXMAG00000002227	trnt1	96	68.382	ENSDORG00000014035	Trnt1	94	68.382	Dipodomys_ordii
ENSXMAG00000002227	trnt1	94	49.257	FBgn0037369	CG2100	83	49.257	Drosophila_melanogaster
ENSXMAG00000002227	trnt1	57	74.274	ENSETEG00000018177	TRNT1	97	74.274	Echinops_telfairi
ENSXMAG00000002227	trnt1	99	61.466	ENSEBUG00000012779	-	99	61.466	Eptatretus_burgeri
ENSXMAG00000002227	trnt1	96	69.704	ENSEASG00005003577	TRNT1	94	69.704	Equus_asinus_asinus
ENSXMAG00000002227	trnt1	96	69.951	ENSECAG00000014420	TRNT1	94	69.951	Equus_caballus
ENSXMAG00000002227	trnt1	99	67.139	ENSEEUG00000009567	TRNT1	97	67.139	Erinaceus_europaeus
ENSXMAG00000002227	trnt1	99	79.157	ENSELUG00000003802	trnt1	99	79.157	Esox_lucius
ENSXMAG00000002227	trnt1	96	68.473	ENSFCAG00000026805	TRNT1	93	68.473	Felis_catus
ENSXMAG00000002227	trnt1	90	72.063	ENSFALG00000013539	TRNT1	99	72.063	Ficedula_albicollis
ENSXMAG00000002227	trnt1	99	65.721	ENSFDAG00000018412	TRNT1	96	65.721	Fukomys_damarensis
ENSXMAG00000002227	trnt1	99	88.443	ENSFHEG00000019294	trnt1	99	88.443	Fundulus_heteroclitus
ENSXMAG00000002227	trnt1	99	78.638	ENSGMOG00000007460	trnt1	100	78.638	Gadus_morhua
ENSXMAG00000002227	trnt1	99	67.299	ENSGALG00000017368	TRNT1	97	67.299	Gallus_gallus
ENSXMAG00000002227	trnt1	100	96.941	ENSGAFG00000008647	trnt1	100	96.941	Gambusia_affinis
ENSXMAG00000002227	trnt1	99	82.160	ENSGACG00000011903	trnt1	99	82.160	Gasterosteus_aculeatus
ENSXMAG00000002227	trnt1	96	71.324	ENSGAGG00000020942	TRNT1	93	71.324	Gopherus_agassizii
ENSXMAG00000002227	trnt1	96	69.212	ENSGGOG00000015286	TRNT1	94	69.212	Gorilla_gorilla
ENSXMAG00000002227	trnt1	100	82.201	ENSHBUG00000002797	trnt1	100	82.201	Haplochromis_burtoni
ENSXMAG00000002227	trnt1	99	61.557	ENSHGLG00000000221	-	96	61.557	Heterocephalus_glaber_female
ENSXMAG00000002227	trnt1	96	67.647	ENSHGLG00000003649	TRNT1	94	67.647	Heterocephalus_glaber_female
ENSXMAG00000002227	trnt1	96	66.667	ENSHGLG00100016421	TRNT1	94	66.667	Heterocephalus_glaber_male
ENSXMAG00000002227	trnt1	99	76.761	ENSHCOG00000010618	trnt1	99	76.761	Hippocampus_comes
ENSXMAG00000002227	trnt1	99	76.402	ENSIPUG00000000971	trnt1	99	76.402	Ictalurus_punctatus
ENSXMAG00000002227	trnt1	96	69.608	ENSSTOG00000000150	TRNT1	86	78.771	Ictidomys_tridecemlineatus
ENSXMAG00000002227	trnt1	96	68.873	ENSJJAG00000018561	Trnt1	94	68.873	Jaculus_jaculus
ENSXMAG00000002227	trnt1	100	84.038	ENSKMAG00000011307	trnt1	100	84.038	Kryptolebias_marmoratus
ENSXMAG00000002227	trnt1	96	76.886	ENSLBEG00000019457	trnt1	97	76.886	Labrus_bergylta
ENSXMAG00000002227	trnt1	98	71.084	ENSLACG00000013227	TRNT1	96	71.084	Latimeria_chalumnae
ENSXMAG00000002227	trnt1	99	73.193	ENSLOCG00000011105	trnt1	98	73.193	Lepisosteus_oculatus
ENSXMAG00000002227	trnt1	96	68.966	ENSLAFG00000023191	TRNT1	94	68.966	Loxodonta_africana
ENSXMAG00000002227	trnt1	96	69.458	ENSMFAG00000045113	TRNT1	92	69.458	Macaca_fascicularis
ENSXMAG00000002227	trnt1	96	69.458	ENSMMUG00000017983	TRNT1	92	69.458	Macaca_mulatta
ENSXMAG00000002227	trnt1	96	69.458	ENSMNEG00000037805	TRNT1	92	69.458	Macaca_nemestrina
ENSXMAG00000002227	trnt1	90	70.157	ENSMLEG00000033671	TRNT1	99	70.157	Mandrillus_leucophaeus
ENSXMAG00000002227	trnt1	99	83.099	ENSMAMG00000023401	trnt1	99	83.099	Mastacembelus_armatus
ENSXMAG00000002227	trnt1	100	81.967	ENSMZEG00005009141	trnt1	100	81.967	Maylandia_zebra
ENSXMAG00000002227	trnt1	75	67.398	ENSMGAG00000009971	TRNT1	99	67.398	Meleagris_gallopavo
ENSXMAG00000002227	trnt1	96	68.627	ENSMAUG00000020707	Trnt1	94	68.627	Mesocricetus_auratus
ENSXMAG00000002227	trnt1	96	69.118	ENSMICG00000016615	TRNT1	94	69.118	Microcebus_murinus
ENSXMAG00000002227	trnt1	96	68.382	ENSMOCG00000004539	Trnt1	94	68.382	Microtus_ochrogaster
ENSXMAG00000002227	trnt1	99	80.189	ENSMMOG00000010742	trnt1	99	80.189	Mola_mola
ENSXMAG00000002227	trnt1	96	68.137	ENSMODG00000004368	TRNT1	94	68.137	Monodelphis_domestica
ENSXMAG00000002227	trnt1	99	80.516	ENSMALG00000008376	trnt1	99	80.516	Monopterus_albus
ENSXMAG00000002227	trnt1	96	68.137	MGP_CAROLIEiJ_G0028698	Trnt1	90	73.770	Mus_caroli
ENSXMAG00000002227	trnt1	96	67.892	ENSMUSG00000013736	Trnt1	83	79.888	Mus_musculus
ENSXMAG00000002227	trnt1	96	69.363	MGP_PahariEiJ_G0022449	Trnt1	88	81.006	Mus_pahari
ENSXMAG00000002227	trnt1	96	68.137	MGP_SPRETEiJ_G0029726	Trnt1	83	79.888	Mus_spretus
ENSXMAG00000002227	trnt1	96	68.227	ENSMPUG00000017017	TRNT1	93	68.227	Mustela_putorius_furo
ENSXMAG00000002227	trnt1	90	69.531	ENSMLUG00000011864	TRNT1	99	69.531	Myotis_lucifugus
ENSXMAG00000002227	trnt1	96	67.647	ENSNGAG00000000537	Trnt1	94	67.647	Nannospalax_galili
ENSXMAG00000002227	trnt1	81	82.370	ENSNBRG00000023606	trnt1	99	82.370	Neolamprologus_brichardi
ENSXMAG00000002227	trnt1	96	69.458	ENSNLEG00000003226	TRNT1	94	69.458	Nomascus_leucogenys
ENSXMAG00000002227	trnt1	96	67.892	ENSMEUG00000004684	TRNT1	94	67.892	Notamacropus_eugenii
ENSXMAG00000002227	trnt1	90	66.230	ENSOPRG00000015067	TRNT1	99	66.230	Ochotona_princeps
ENSXMAG00000002227	trnt1	99	66.430	ENSODEG00000007597	TRNT1	96	66.430	Octodon_degus
ENSXMAG00000002227	trnt1	99	83.099	ENSONIG00000020273	trnt1	98	83.099	Oreochromis_niloticus
ENSXMAG00000002227	trnt1	99	63.232	ENSOANG00000007514	TRNT1	99	63.232	Ornithorhynchus_anatinus
ENSXMAG00000002227	trnt1	98	66.507	ENSOCUG00000008580	TRNT1	97	66.507	Oryctolagus_cuniculus
ENSXMAG00000002227	trnt1	100	79.254	ENSORLG00000003165	trnt1	100	79.254	Oryzias_latipes
ENSXMAG00000002227	trnt1	100	79.720	ENSORLG00020022060	trnt1	100	79.720	Oryzias_latipes_hni
ENSXMAG00000002227	trnt1	100	79.487	ENSORLG00015018915	trnt1	99	79.487	Oryzias_latipes_hsok
ENSXMAG00000002227	trnt1	100	76.941	ENSOMEG00000003331	trnt1	100	76.941	Oryzias_melastigma
ENSXMAG00000002227	trnt1	99	66.667	ENSOARG00000008631	TRNT1	95	66.667	Ovis_aries
ENSXMAG00000002227	trnt1	96	68.966	ENSPPAG00000043566	TRNT1	94	68.966	Pan_paniscus
ENSXMAG00000002227	trnt1	96	68.227	ENSPPRG00000001327	TRNT1	93	68.227	Panthera_pardus
ENSXMAG00000002227	trnt1	96	68.227	ENSPTIG00000011448	TRNT1	93	68.227	Panthera_tigris_altaica
ENSXMAG00000002227	trnt1	96	68.966	ENSPTRG00000014564	TRNT1	94	68.966	Pan_troglodytes
ENSXMAG00000002227	trnt1	96	69.458	ENSPANG00000025944	TRNT1	92	69.458	Papio_anubis
ENSXMAG00000002227	trnt1	99	75.234	ENSPKIG00000020015	trnt1	99	75.234	Paramormyrops_kingsleyae
ENSXMAG00000002227	trnt1	93	70.886	ENSPSIG00000017356	TRNT1	99	71.111	Pelodiscus_sinensis
ENSXMAG00000002227	trnt1	99	78.638	ENSPMGG00000008888	trnt1	98	78.638	Periophthalmus_magnuspinnatus
ENSXMAG00000002227	trnt1	96	68.627	ENSPEMG00000019845	Trnt1	94	68.627	Peromyscus_maniculatus_bairdii
ENSXMAG00000002227	trnt1	96	68.627	ENSPCIG00000030436	TRNT1	94	68.627	Phascolarctos_cinereus
ENSXMAG00000002227	trnt1	99	96.682	ENSPFOG00000006194	trnt1	99	96.682	Poecilia_formosa
ENSXMAG00000002227	trnt1	99	96.445	ENSPLAG00000015623	trnt1	100	96.535	Poecilia_latipinna
ENSXMAG00000002227	trnt1	100	96.471	ENSPMEG00000012216	trnt1	100	96.471	Poecilia_mexicana
ENSXMAG00000002227	trnt1	100	95.765	ENSPREG00000021470	trnt1	100	95.765	Poecilia_reticulata
ENSXMAG00000002227	trnt1	96	68.627	ENSPPYG00000013702	TRNT1	94	68.627	Pongo_abelii
ENSXMAG00000002227	trnt1	90	70.157	ENSPCAG00000001951	TRNT1	99	70.157	Procavia_capensis
ENSXMAG00000002227	trnt1	96	68.966	ENSPCOG00000022228	TRNT1	94	68.966	Propithecus_coquereli
ENSXMAG00000002227	trnt1	90	68.848	ENSPVAG00000008784	TRNT1	99	68.848	Pteropus_vampyrus
ENSXMAG00000002227	trnt1	100	81.733	ENSPNYG00000003120	trnt1	100	81.733	Pundamilia_nyererei
ENSXMAG00000002227	trnt1	99	77.570	ENSPNAG00000000565	trnt1	99	77.570	Pygocentrus_nattereri
ENSXMAG00000002227	trnt1	96	69.118	ENSRNOG00000006432	Trnt1	94	69.118	Rattus_norvegicus
ENSXMAG00000002227	trnt1	96	68.473	ENSRBIG00000042632	TRNT1	93	68.473	Rhinopithecus_bieti
ENSXMAG00000002227	trnt1	96	69.458	ENSRROG00000036866	TRNT1	94	69.458	Rhinopithecus_roxellana
ENSXMAG00000002227	trnt1	96	68.719	ENSSBOG00000021208	TRNT1	94	68.719	Saimiri_boliviensis_boliviensis
ENSXMAG00000002227	trnt1	96	67.488	ENSSHAG00000018861	TRNT1	94	67.488	Sarcophilus_harrisii
ENSXMAG00000002227	trnt1	99	75.058	ENSSFOG00015020844	trnt1	99	75.058	Scleropages_formosus
ENSXMAG00000002227	trnt1	99	83.333	ENSSMAG00000015432	trnt1	98	83.333	Scophthalmus_maximus
ENSXMAG00000002227	trnt1	99	84.038	ENSSDUG00000012320	trnt1	100	84.038	Seriola_dumerili
ENSXMAG00000002227	trnt1	99	83.803	ENSSLDG00000009325	trnt1	100	83.803	Seriola_lalandi_dorsalis
ENSXMAG00000002227	trnt1	57	81.743	ENSSLDG00000016463	-	91	82.008	Seriola_lalandi_dorsalis
ENSXMAG00000002227	trnt1	90	70.942	ENSSPUG00000014153	TRNT1	99	70.942	Sphenodon_punctatus
ENSXMAG00000002227	trnt1	99	82.629	ENSSPAG00000021005	trnt1	99	82.629	Stegastes_partitus
ENSXMAG00000002227	trnt1	96	68.049	ENSSSCG00000011529	TRNT1	96	66.667	Sus_scrofa
ENSXMAG00000002227	trnt1	95	71.040	ENSTGUG00000010192	TRNT1	99	71.040	Taeniopygia_guttata
ENSXMAG00000002227	trnt1	99	79.577	ENSTRUG00000001088	trnt1	99	79.577	Takifugu_rubripes
ENSXMAG00000002227	trnt1	99	79.577	ENSTNIG00000007363	trnt1	98	79.577	Tetraodon_nigroviridis
ENSXMAG00000002227	trnt1	57	61.411	ENSTBEG00000006367	TRNT1	80	61.411	Tupaia_belangeri
ENSXMAG00000002227	trnt1	99	65.957	ENSTTRG00000007803	TRNT1	96	65.957	Tursiops_truncatus
ENSXMAG00000002227	trnt1	96	68.473	ENSUAMG00000022574	TRNT1	93	68.473	Ursus_americanus
ENSXMAG00000002227	trnt1	96	68.227	ENSUMAG00000024092	TRNT1	93	68.227	Ursus_maritimus
ENSXMAG00000002227	trnt1	96	68.473	ENSVVUG00000012810	TRNT1	93	68.473	Vulpes_vulpes
ENSXMAG00000002227	trnt1	96	61.858	ENSXETG00000025091	trnt1	99	61.940	Xenopus_tropicalis
ENSXMAG00000002227	trnt1	100	99.059	ENSXCOG00000010150	trnt1	100	99.059	Xiphophorus_couchianus