EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002316 (Gene tree)
Gene ID: 102236575
Gene Symbol: GAR1
Alias: NOLA1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 2877 bases
Position: chr23:1860461-1863337
Accession: 102236575
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002316	Gar1	PF04410.14	8.5e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000002321	GAR1-201	959	XM_023328997	ENSXMAP00000002316	236 (aa)	XP_023184765	M3ZJC4

Gene Model

Click here to download ENSXMAG00000002316's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002316's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002316	GAR1	60	54.930	WBGene00022046	Y66H1A.4	57	54.930	Caenorhabditis_elegans
ENSXMAG00000002316	GAR1	67	81.356	ENSCHIG00000011049	-	54	80.374	Capra_hircus
ENSXMAG00000002316	GAR1	52	91.803	ENSCGRG00001003919	Gar1	58	87.597	Cricetulus_griseus_chok1gshd
ENSXMAG00000002316	GAR1	90	94.366	ENSCVAG00000002103	gar1	52	98.148	Cyprinodon_variegatus
ENSXMAG00000002316	GAR1	89	95.349	ENSGAFG00000016833	gar1	90	95.349	Gambusia_affinis
ENSXMAG00000002316	GAR1	51	86.667	ENSLACG00000003306	GAR1	64	87.736	Latimeria_chalumnae
ENSXMAG00000002316	GAR1	52	91.803	ENSMAUG00000016788	Gar1	70	96.364	Mesocricetus_auratus
ENSXMAG00000002316	GAR1	65	90.984	MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	Mus_caroli
ENSXMAG00000002316	GAR1	65	89.600	ENSMUSG00000028010	Gar1	70	96.364	Mus_musculus
ENSXMAG00000002316	GAR1	53	89.600	MGP_PahariEiJ_G0027076	Gar1	70	96.364	Mus_pahari
ENSXMAG00000002316	GAR1	65	89.600	MGP_SPRETEiJ_G0026580	Gar1	70	96.364	Mus_spretus
ENSXMAG00000002316	GAR1	66	84.615	ENSNLEG00000016578	GAR1	50	94.393	Nomascus_leucogenys
ENSXMAG00000002316	GAR1	67	69.427	ENSOPRG00000012089	GAR1	53	80.303	Ochotona_princeps
ENSXMAG00000002316	GAR1	90	96.714	ENSPMEG00000009320	gar1	100	96.714	Poecilia_mexicana
ENSXMAG00000002316	GAR1	89	96.698	ENSPREG00000010377	gar1	90	96.698	Poecilia_reticulata
ENSXMAG00000002316	GAR1	60	84.507	ENSVVUG00000017612	GAR1	55	93.458	Vulpes_vulpes
ENSXMAG00000002316	GAR1	89	99.526	ENSXCOG00000014843	GAR1	90	99.526	Xiphophorus_couchianus