EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002472 (Gene tree)
Gene ID: 102227343
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 16149 bases
Position: chr3:28824402-28840550
Accession: 102227343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002475	POP1	PF06978.11	2.8e-37	1	2
ENSXMAP00000002475	POP1	PF06978.11	2.8e-37	2	2
ENSXMAP00000002475	POPLD	PF08170.12	7.3e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000002480	POP1-201	6918	XM_023331030	ENSXMAP00000002475	960 (aa)	XP_023186798	M3ZJT3

Gene Model

Click here to download ENSXMAG00000002472's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG
xma03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002472's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002472	POP1	100	47.303	ENSG00000104356	POP1	100	47.839	Homo_sapiens
ENSXMAG00000002472	POP1	100	72.902	ENSAPOG00000008198	pop1	100	72.902	Acanthochromis_polyacanthus
ENSXMAG00000002472	POP1	100	47.404	ENSAMEG00000000556	POP1	100	47.404	Ailuropoda_melanoleuca
ENSXMAG00000002472	POP1	100	66.835	ENSACIG00000004169	POP1	100	66.532	Amphilophus_citrinellus
ENSXMAG00000002472	POP1	100	72.470	ENSAOCG00000010991	pop1	100	72.470	Amphiprion_ocellaris
ENSXMAG00000002472	POP1	100	66.667	ENSAPEG00000007607	pop1	100	66.265	Amphiprion_percula
ENSXMAG00000002472	POP1	100	68.813	ENSATEG00000024814	POP1	100	69.316	Anabas_testudineus
ENSXMAG00000002472	POP1	94	49.523	ENSAPLG00000014418	POP1	99	49.841	Anas_platyrhynchos
ENSXMAG00000002472	POP1	100	46.109	ENSACAG00000016083	POP1	100	46.206	Anolis_carolinensis
ENSXMAG00000002472	POP1	87	53.636	ENSANAG00000026360	POP1	99	53.636	Aotus_nancymaae
ENSXMAG00000002472	POP1	100	70.091	ENSACLG00000010951	pop1	100	70.493	Astatotilapia_calliptera
ENSXMAG00000002472	POP1	100	55.030	ENSAMXG00000014483	POP1	100	55.030	Astyanax_mexicanus
ENSXMAG00000002472	POP1	100	48.359	ENSBTAG00000012596	POP1	100	48.552	Bos_taurus
ENSXMAG00000002472	POP1	71	30.040	WBGene00015486	C05D11.9	57	31.776	Caenorhabditis_elegans
ENSXMAG00000002472	POP1	100	47.190	ENSCJAG00000015567	POP1	100	47.763	Callithrix_jacchus
ENSXMAG00000002472	POP1	100	48.406	ENSCAFG00000000469	POP1	100	48.406	Canis_familiaris
ENSXMAG00000002472	POP1	100	47.333	ENSCAFG00020026765	POP1	100	47.333	Canis_lupus_dingo
ENSXMAG00000002472	POP1	100	47.133	ENSCHIG00000017066	POP1	100	47.872	Capra_hircus
ENSXMAG00000002472	POP1	100	47.399	ENSTSYG00000003097	POP1	100	47.784	Carlito_syrichta
ENSXMAG00000002472	POP1	100	45.192	ENSCAPG00000007251	POP1	100	45.385	Cavia_aperea
ENSXMAG00000002472	POP1	100	45.946	ENSCPOG00000002901	POP1	100	46.139	Cavia_porcellus
ENSXMAG00000002472	POP1	100	47.801	ENSCCAG00000018939	POP1	100	47.996	Cebus_capucinus
ENSXMAG00000002472	POP1	100	47.233	ENSCATG00000040916	POP1	100	47.233	Cercocebus_atys
ENSXMAG00000002472	POP1	100	45.621	ENSCLAG00000007208	POP1	97	46.035	Chinchilla_lanigera
ENSXMAG00000002472	POP1	91	49.200	ENSCSAG00000012340	POP1	98	49.138	Chlorocebus_sabaeus
ENSXMAG00000002472	POP1	95	45.659	ENSCHOG00000011432	POP1	98	45.641	Choloepus_hoffmanni
ENSXMAG00000002472	POP1	100	49.064	ENSCPBG00000006373	POP1	100	49.460	Chrysemys_picta_bellii
ENSXMAG00000002472	POP1	84	33.585	ENSCING00000008323	-	76	33.585	Ciona_intestinalis
ENSXMAG00000002472	POP1	100	47.318	ENSCANG00000001647	POP1	100	47.318	Colobus_angolensis_palliatus
ENSXMAG00000002472	POP1	100	45.857	ENSCGRG00001017308	Pop1	100	45.998	Cricetulus_griseus_chok1gshd
ENSXMAG00000002472	POP1	100	43.572	ENSCGRG00000010824	Pop1	100	44.008	Cricetulus_griseus_crigri
ENSXMAG00000002472	POP1	100	66.093	ENSCSEG00000008737	POP1	100	66.599	Cynoglossus_semilaevis
ENSXMAG00000002472	POP1	100	77.357	ENSCVAG00000022248	pop1	100	77.357	Cyprinodon_variegatus
ENSXMAG00000002472	POP1	53	53.543	ENSDARG00000102087	pop1	98	53.543	Danio_rerio
ENSXMAG00000002472	POP1	100	44.953	ENSDNOG00000019974	POP1	100	45.047	Dasypus_novemcinctus
ENSXMAG00000002472	POP1	100	41.748	ENSDORG00000015384	Pop1	100	41.739	Dipodomys_ordii
ENSXMAG00000002472	POP1	88	45.983	ENSETEG00000007839	POP1	88	45.983	Echinops_telfairi
ENSXMAG00000002472	POP1	52	42.941	ENSEBUG00000009897	pop1	96	42.353	Eptatretus_burgeri
ENSXMAG00000002472	POP1	100	46.693	ENSEASG00005003189	POP1	98	46.887	Equus_asinus_asinus
ENSXMAG00000002472	POP1	100	46.887	ENSECAG00000024236	POP1	100	47.082	Equus_caballus
ENSXMAG00000002472	POP1	51	70.886	ENSEEUG00000003050	-	54	70.886	Erinaceus_europaeus
ENSXMAG00000002472	POP1	100	60.548	ENSELUG00000003526	pop1	100	60.751	Esox_lucius
ENSXMAG00000002472	POP1	100	47.236	ENSFCAG00000002168	POP1	100	47.236	Felis_catus
ENSXMAG00000002472	POP1	100	46.035	ENSFALG00000005711	POP1	100	46.893	Ficedula_albicollis
ENSXMAG00000002472	POP1	100	45.480	ENSFDAG00000017068	POP1	100	45.910	Fukomys_damarensis
ENSXMAG00000002472	POP1	100	76.994	ENSFHEG00000019518	pop1	100	76.994	Fundulus_heteroclitus
ENSXMAG00000002472	POP1	100	58.524	ENSGMOG00000000659	POP1	100	58.524	Gadus_morhua
ENSXMAG00000002472	POP1	100	92.292	ENSGAFG00000019770	POP1	100	92.292	Gambusia_affinis
ENSXMAG00000002472	POP1	100	63.654	ENSGACG00000003499	pop1	91	70.285	Gasterosteus_aculeatus
ENSXMAG00000002472	POP1	100	48.381	ENSGAGG00000011737	POP1	98	48.970	Gopherus_agassizii
ENSXMAG00000002472	POP1	100	47.409	ENSGGOG00000003176	POP1	100	47.701	Gorilla_gorilla
ENSXMAG00000002472	POP1	100	70.393	ENSHBUG00000021583	pop1	100	70.695	Haplochromis_burtoni
ENSXMAG00000002472	POP1	100	45.954	ENSHGLG00000006029	POP1	100	46.146	Heterocephalus_glaber_female
ENSXMAG00000002472	POP1	100	45.954	ENSHGLG00100016879	POP1	100	46.146	Heterocephalus_glaber_male
ENSXMAG00000002472	POP1	100	60.944	ENSHCOG00000013888	pop1	100	60.843	Hippocampus_comes
ENSXMAG00000002472	POP1	100	54.810	ENSIPUG00000018336	pop1	100	54.810	Ictalurus_punctatus
ENSXMAG00000002472	POP1	100	46.525	ENSSTOG00000011455	POP1	97	46.525	Ictidomys_tridecemlineatus
ENSXMAG00000002472	POP1	100	46.351	ENSJJAG00000013325	Pop1	100	46.351	Jaculus_jaculus
ENSXMAG00000002472	POP1	100	73.608	ENSKMAG00000001346	POP1	100	73.608	Kryptolebias_marmoratus
ENSXMAG00000002472	POP1	100	63.701	ENSLBEG00000024457	POP1	100	63.292	Labrus_bergylta
ENSXMAG00000002472	POP1	92	51.212	ENSLACG00000012498	POP1	97	51.528	Latimeria_chalumnae
ENSXMAG00000002472	POP1	100	55.929	ENSLOCG00000009817	POP1	100	56.004	Lepisosteus_oculatus
ENSXMAG00000002472	POP1	100	46.974	ENSLAFG00000010770	POP1	100	47.683	Loxodonta_africana
ENSXMAG00000002472	POP1	100	46.800	ENSMFAG00000000347	POP1	100	46.800	Macaca_fascicularis
ENSXMAG00000002472	POP1	100	46.756	ENSMNEG00000036870	POP1	100	46.947	Macaca_nemestrina
ENSXMAG00000002472	POP1	100	47.137	ENSMLEG00000034986	POP1	100	47.137	Mandrillus_leucophaeus
ENSXMAG00000002472	POP1	100	69.363	ENSMAMG00000004040	pop1	100	69.363	Mastacembelus_armatus
ENSXMAG00000002472	POP1	100	70.091	ENSMZEG00005025448	pop1	100	70.393	Maylandia_zebra
ENSXMAG00000002472	POP1	100	46.711	ENSMGAG00000012167	POP1	100	46.800	Meleagris_gallopavo
ENSXMAG00000002472	POP1	100	46.473	ENSMAUG00000017537	Pop1	100	46.473	Mesocricetus_auratus
ENSXMAG00000002472	POP1	100	45.857	ENSMICG00000004361	POP1	100	45.998	Microcebus_murinus
ENSXMAG00000002472	POP1	100	46.469	ENSMOCG00000006356	Pop1	100	46.463	Microtus_ochrogaster
ENSXMAG00000002472	POP1	100	63.142	ENSMMOG00000018242	pop1	100	62.898	Mola_mola
ENSXMAG00000002472	POP1	100	45.437	ENSMODG00000006561	POP1	100	45.629	Monodelphis_domestica
ENSXMAG00000002472	POP1	100	68.379	ENSMALG00000012621	POP1	100	68.379	Monopterus_albus
ENSXMAG00000002472	POP1	100	44.423	MGP_CAROLIEiJ_G0019726	Pop1	100	44.923	Mus_caroli
ENSXMAG00000002472	POP1	100	44.286	ENSMUSG00000022325	Pop1	100	44.689	Mus_musculus
ENSXMAG00000002472	POP1	100	44.073	MGP_PahariEiJ_G0019735	Pop1	100	44.573	Mus_pahari
ENSXMAG00000002472	POP1	100	45.000	MGP_SPRETEiJ_G0020622	Pop1	100	45.096	Mus_spretus
ENSXMAG00000002472	POP1	100	47.541	ENSMPUG00000015250	POP1	100	47.541	Mustela_putorius_furo
ENSXMAG00000002472	POP1	100	45.789	ENSMLUG00000010204	POP1	100	45.789	Myotis_lucifugus
ENSXMAG00000002472	POP1	100	45.837	ENSNGAG00000001582	Pop1	100	46.538	Nannospalax_galili
ENSXMAG00000002472	POP1	100	65.486	ENSNBRG00000002356	pop1	100	65.385	Neolamprologus_brichardi
ENSXMAG00000002472	POP1	100	47.510	ENSNLEG00000002541	POP1	100	47.510	Nomascus_leucogenys
ENSXMAG00000002472	POP1	87	54.706	ENSMEUG00000003118	POP1	90	54.706	Notamacropus_eugenii
ENSXMAG00000002472	POP1	100	46.771	ENSOPRG00000007667	POP1	100	46.771	Ochotona_princeps
ENSXMAG00000002472	POP1	100	46.169	ENSODEG00000003984	POP1	100	46.169	Octodon_degus
ENSXMAG00000002472	POP1	100	70.594	ENSONIG00000016445	pop1	100	70.997	Oreochromis_niloticus
ENSXMAG00000002472	POP1	61	44.533	ENSOANG00000001278	-	94	44.135	Ornithorhynchus_anatinus
ENSXMAG00000002472	POP1	100	46.058	ENSOCUG00000017400	POP1	100	46.250	Oryctolagus_cuniculus
ENSXMAG00000002472	POP1	100	69.650	ENSORLG00000002839	pop1	100	69.650	Oryzias_latipes
ENSXMAG00000002472	POP1	100	64.393	ENSORLG00020022450	POP1	100	63.691	Oryzias_latipes_hni
ENSXMAG00000002472	POP1	100	69.672	ENSORLG00015012746	POP1	100	69.672	Oryzias_latipes_hsok
ENSXMAG00000002472	POP1	100	68.983	ENSOMEG00000006915	pop1	99	69.223	Oryzias_melastigma
ENSXMAG00000002472	POP1	100	46.213	ENSOGAG00000001466	POP1	100	46.724	Otolemur_garnettii
ENSXMAG00000002472	POP1	100	47.399	ENSPPAG00000018410	POP1	100	47.935	Pan_paniscus
ENSXMAG00000002472	POP1	100	46.996	ENSPPRG00000005002	POP1	100	47.338	Panthera_pardus
ENSXMAG00000002472	POP1	100	47.190	ENSPTIG00000016527	POP1	100	47.190	Panthera_tigris_altaica
ENSXMAG00000002472	POP1	100	47.303	ENSPTRG00000020458	POP1	100	47.839	Pan_troglodytes
ENSXMAG00000002472	POP1	100	47.233	ENSPANG00000009704	POP1	100	47.233	Papio_anubis
ENSXMAG00000002472	POP1	100	58.571	ENSPKIG00000016325	POP1	100	58.571	Paramormyrops_kingsleyae
ENSXMAG00000002472	POP1	100	47.642	ENSPSIG00000012343	POP1	100	47.931	Pelodiscus_sinensis
ENSXMAG00000002472	POP1	100	61.900	ENSPMGG00000022253	POP1	100	61.615	Periophthalmus_magnuspinnatus
ENSXMAG00000002472	POP1	99	45.186	ENSPEMG00000023633	Pop1	100	45.186	Peromyscus_maniculatus_bairdii
ENSXMAG00000002472	POP1	91	43.547	ENSPMAG00000003209	POP1	99	43.810	Petromyzon_marinus
ENSXMAG00000002472	POP1	100	45.472	ENSPCIG00000012216	POP1	100	45.472	Phascolarctos_cinereus
ENSXMAG00000002472	POP1	100	91.354	ENSPFOG00000012490	POP1	100	91.354	Poecilia_formosa
ENSXMAG00000002472	POP1	100	91.354	ENSPLAG00000004646	POP1	100	91.354	Poecilia_latipinna
ENSXMAG00000002472	POP1	100	91.458	ENSPMEG00000019592	POP1	100	91.458	Poecilia_mexicana
ENSXMAG00000002472	POP1	100	91.060	ENSPREG00000020951	POP1	100	91.060	Poecilia_reticulata
ENSXMAG00000002472	POP1	100	47.358	ENSPPYG00000018777	POP1	100	47.454	Pongo_abelii
ENSXMAG00000002472	POP1	100	44.744	ENSPCAG00000016662	POP1	100	44.744	Procavia_capensis
ENSXMAG00000002472	POP1	100	46.429	ENSPCOG00000019420	POP1	100	46.570	Propithecus_coquereli
ENSXMAG00000002472	POP1	100	46.911	ENSPVAG00000014468	POP1	100	47.303	Pteropus_vampyrus
ENSXMAG00000002472	POP1	100	66.327	ENSPNYG00000004476	pop1	100	65.749	Pundamilia_nyererei
ENSXMAG00000002472	POP1	100	54.244	ENSPNAG00000000265	pop1	100	54.244	Pygocentrus_nattereri
ENSXMAG00000002472	POP1	100	45.802	ENSRNOG00000005243	Pop1	100	45.992	Rattus_norvegicus
ENSXMAG00000002472	POP1	100	47.464	ENSRBIG00000007996	POP1	100	47.464	Rhinopithecus_bieti
ENSXMAG00000002472	POP1	100	47.464	ENSRROG00000012334	POP1	100	47.464	Rhinopithecus_roxellana
ENSXMAG00000002472	POP1	99	47.220	ENSSBOG00000020830	POP1	100	47.415	Saimiri_boliviensis_boliviensis
ENSXMAG00000002472	POP1	100	45.350	ENSSHAG00000000296	POP1	100	45.350	Sarcophilus_harrisii
ENSXMAG00000002472	POP1	100	58.410	ENSSFOG00015007429	pop1	99	58.410	Scleropages_formosus
ENSXMAG00000002472	POP1	100	67.554	ENSSMAG00000010467	POP1	100	68.270	Scophthalmus_maximus
ENSXMAG00000002472	POP1	100	70.838	ENSSDUG00000007817	POP1	100	70.838	Seriola_dumerili
ENSXMAG00000002472	POP1	100	70.825	ENSSLDG00000012565	POP1	100	70.825	Seriola_lalandi_dorsalis
ENSXMAG00000002472	POP1	100	44.844	ENSSPUG00000003550	-	100	45.393	Sphenodon_punctatus
ENSXMAG00000002472	POP1	100	69.645	ENSSPAG00000014955	pop1	100	69.239	Stegastes_partitus
ENSXMAG00000002472	POP1	100	47.353	ENSSSCG00000006078	POP1	100	47.353	Sus_scrofa
ENSXMAG00000002472	POP1	94	44.549	ENSTGUG00000012011	-	100	44.759	Taeniopygia_guttata
ENSXMAG00000002472	POP1	100	66.290	ENSTRUG00000010856	pop1	100	65.776	Takifugu_rubripes
ENSXMAG00000002472	POP1	93	67.628	ENSTNIG00000013297	pop1	98	67.628	Tetraodon_nigroviridis
ENSXMAG00000002472	POP1	95	46.027	ENSTBEG00000014214	POP1	97	46.392	Tupaia_belangeri
ENSXMAG00000002472	POP1	100	45.490	ENSTTRG00000016071	POP1	100	45.490	Tursiops_truncatus
ENSXMAG00000002472	POP1	99	47.921	ENSUAMG00000017309	POP1	100	47.921	Ursus_americanus
ENSXMAG00000002472	POP1	100	47.132	ENSUMAG00000016952	POP1	100	51.527	Ursus_maritimus
ENSXMAG00000002472	POP1	85	52.555	ENSVPAG00000008278	POP1	77	52.555	Vicugna_pacos
ENSXMAG00000002472	POP1	100	46.893	ENSVVUG00000010994	POP1	100	47.139	Vulpes_vulpes
ENSXMAG00000002472	POP1	100	86.035	ENSXCOG00000017043	POP1	100	86.035	Xiphophorus_couchianus