EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002540 (Gene tree)
Gene ID: 102238036
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 20534 bases
Position: chr9:6676690-6697223
Accession: 102238036
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002552	UPF1_Zn_bind	PF09416.10	1.8e-74	1	1
ENSXMAP00000002552	ResIII	PF04851.15	3.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000002557	-	3300	XM_005800846	ENSXMAP00000002552	1098 (aa)	XP_005800903	M3ZK10

Gene Model

Click here to download ENSXMAG00000002540's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002540	-	100	91.971	ENSG00000005007	UPF1	100	92.061	Homo_sapiens
ENSXMAG00000002540	-	100	98.094	ENSAPOG00000010916	-	100	98.094	Acanthochromis_polyacanthus
ENSXMAG00000002540	-	100	93.110	ENSAPOG00000023773	upf1	100	93.110	Acanthochromis_polyacanthus
ENSXMAG00000002540	-	100	91.474	ENSAMEG00000011474	UPF1	100	91.563	Ailuropoda_melanoleuca
ENSXMAG00000002540	-	100	93.279	ENSACIG00000019949	upf1	100	93.097	Amphilophus_citrinellus
ENSXMAG00000002540	-	93	97.563	ENSACIG00000010985	-	100	97.563	Amphilophus_citrinellus
ENSXMAG00000002540	-	100	98.004	ENSAOCG00000006352	-	100	98.004	Amphiprion_ocellaris
ENSXMAG00000002540	-	100	92.623	ENSAOCG00000018519	upf1	100	92.623	Amphiprion_ocellaris
ENSXMAG00000002540	-	100	92.623	ENSAPEG00000016344	upf1	100	92.623	Amphiprion_percula
ENSXMAG00000002540	-	100	97.913	ENSAPEG00000006292	-	100	97.913	Amphiprion_percula
ENSXMAG00000002540	-	100	97.913	ENSATEG00000016606	-	100	97.913	Anabas_testudineus
ENSXMAG00000002540	-	100	91.347	ENSATEG00000017867	upf1	100	91.868	Anabas_testudineus
ENSXMAG00000002540	-	95	93.460	ENSAPLG00000009175	UPF1	100	93.460	Anas_platyrhynchos
ENSXMAG00000002540	-	95	92.205	ENSANAG00000024107	UPF1	95	92.205	Aotus_nancymaae
ENSXMAG00000002540	-	100	93.188	ENSACLG00000007181	upf1	100	93.006	Astatotilapia_calliptera
ENSXMAG00000002540	-	100	98.004	ENSACLG00000022630	-	100	98.004	Astatotilapia_calliptera
ENSXMAG00000002540	-	100	94.470	ENSAMXG00000042187	upf1	100	94.016	Astyanax_mexicanus
ENSXMAG00000002540	-	100	91.489	ENSBTAG00000020922	UPF1	100	91.578	Bos_taurus
ENSXMAG00000002540	-	97	49.585	WBGene00004880	smg-2	99	49.267	Caenorhabditis_elegans
ENSXMAG00000002540	-	100	91.247	ENSCJAG00000019627	UPF1	100	91.335	Callithrix_jacchus
ENSXMAG00000002540	-	100	91.247	ENSCAFG00000014578	UPF1	100	91.335	Canis_familiaris
ENSXMAG00000002540	-	100	91.971	ENSCAFG00020012347	UPF1	100	92.061	Canis_lupus_dingo
ENSXMAG00000002540	-	100	92.218	ENSCHIG00000011018	UPF1	100	92.308	Capra_hircus
ENSXMAG00000002540	-	95	93.346	ENSTSYG00000008877	UPF1	98	93.346	Carlito_syrichta
ENSXMAG00000002540	-	96	92.669	ENSCAPG00000005758	UPF1	95	92.776	Cavia_aperea
ENSXMAG00000002540	-	100	92.356	ENSCPOG00000025463	UPF1	100	91.906	Cavia_porcellus
ENSXMAG00000002540	-	100	91.971	ENSCCAG00000032175	UPF1	100	92.061	Cebus_capucinus
ENSXMAG00000002540	-	94	93.792	ENSCATG00000040306	UPF1	97	93.792	Cercocebus_atys
ENSXMAG00000002540	-	95	93.536	ENSCLAG00000004037	UPF1	99	93.061	Chinchilla_lanigera
ENSXMAG00000002540	-	100	91.971	ENSCSAG00000005276	UPF1	100	92.061	Chlorocebus_sabaeus
ENSXMAG00000002540	-	100	92.197	ENSCPBG00000012513	UPF1	100	92.197	Chrysemys_picta_bellii
ENSXMAG00000002540	-	77	79.415	ENSCING00000021399	-	99	78.337	Ciona_intestinalis
ENSXMAG00000002540	-	99	73.063	ENSCSAVG00000006533	-	99	73.063	Ciona_savignyi
ENSXMAG00000002540	-	95	93.536	ENSCANG00000029819	UPF1	97	93.536	Colobus_angolensis_palliatus
ENSXMAG00000002540	-	100	91.756	ENSCGRG00001021067	Upf1	100	91.398	Cricetulus_griseus_chok1gshd
ENSXMAG00000002540	-	95	92.871	ENSCGRG00000013480	Upf1	98	92.395	Cricetulus_griseus_crigri
ENSXMAG00000002540	-	100	88.091	ENSCSEG00000017239	upf1	100	88.113	Cynoglossus_semilaevis
ENSXMAG00000002540	-	100	97.545	ENSCSEG00000016159	-	100	97.545	Cynoglossus_semilaevis
ENSXMAG00000002540	-	100	99.093	ENSCVAG00000010561	upf1	100	99.093	Cyprinodon_variegatus
ENSXMAG00000002540	-	100	94.107	ENSDARG00000016302	upf1	100	94.379	Danio_rerio
ENSXMAG00000002540	-	95	90.970	ENSDORG00000009984	Upf1	95	90.494	Dipodomys_ordii
ENSXMAG00000002540	-	86	71.429	FBgn0030354	Upf1	81	70.881	Drosophila_melanogaster
ENSXMAG00000002540	-	55	85.974	ENSEBUG00000010069	upf1	96	86.304	Eptatretus_burgeri
ENSXMAG00000002540	-	100	92.129	ENSEASG00005006549	UPF1	100	92.218	Equus_asinus_asinus
ENSXMAG00000002540	-	100	92.129	ENSECAG00000010639	UPF1	100	92.218	Equus_caballus
ENSXMAG00000002540	-	100	94.500	ENSELUG00000012916	-	100	94.500	Esox_lucius
ENSXMAG00000002540	-	100	92.690	ENSELUG00000020917	upf1	100	92.148	Esox_lucius
ENSXMAG00000002540	-	100	91.158	ENSFCAG00000009757	UPF1	100	91.247	Felis_catus
ENSXMAG00000002540	-	95	93.905	ENSFALG00000009312	UPF1	96	93.804	Ficedula_albicollis
ENSXMAG00000002540	-	95	93.441	ENSFDAG00000014816	UPF1	99	92.966	Fukomys_damarensis
ENSXMAG00000002540	-	86	98.548	ENSFHEG00000016276	-	96	98.548	Fundulus_heteroclitus
ENSXMAG00000002540	-	100	89.177	ENSFHEG00000006428	upf1	100	88.998	Fundulus_heteroclitus
ENSXMAG00000002540	-	100	94.590	ENSGMOG00000007541	upf1	100	94.775	Gadus_morhua
ENSXMAG00000002540	-	100	91.957	ENSGALG00000003220	UPF1	100	91.868	Gallus_gallus
ENSXMAG00000002540	-	63	94.388	ENSGAFG00000015443	-	85	94.388	Gambusia_affinis
ENSXMAG00000002540	-	100	99.818	ENSGAFG00000004831	upf1	100	99.818	Gambusia_affinis
ENSXMAG00000002540	-	100	92.523	ENSGAGG00000022217	UPF1	100	92.613	Gopherus_agassizii
ENSXMAG00000002540	-	95	94.338	ENSGGOG00000002608	UPF1	99	94.338	Gorilla_gorilla
ENSXMAG00000002540	-	91	81.588	ENSHBUG00000014694	upf1	100	89.157	Haplochromis_burtoni
ENSXMAG00000002540	-	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSXMAG00000002540	-	100	90.981	ENSHGLG00000010900	UPF1	100	91.070	Heterocephalus_glaber_female
ENSXMAG00000002540	-	95	91.635	ENSHGLG00100005904	UPF1	96	91.635	Heterocephalus_glaber_male
ENSXMAG00000002540	-	100	97.457	ENSHCOG00000008918	upf1	100	97.457	Hippocampus_comes
ENSXMAG00000002540	-	100	94.470	ENSIPUG00000005108	UPF1	100	94.016	Ictalurus_punctatus
ENSXMAG00000002540	-	100	91.971	ENSSTOG00000009196	UPF1	100	91.615	Ictidomys_tridecemlineatus
ENSXMAG00000002540	-	100	91.281	ENSJJAG00000023151	Upf1	100	90.925	Jaculus_jaculus
ENSXMAG00000002540	-	100	98.548	ENSKMAG00000004962	upf1	100	98.548	Kryptolebias_marmoratus
ENSXMAG00000002540	-	100	91.226	ENSLBEG00000014862	upf1	100	91.674	Labrus_bergylta
ENSXMAG00000002540	-	100	97.550	ENSLBEG00000027848	-	100	97.550	Labrus_bergylta
ENSXMAG00000002540	-	63	94.269	ENSLACG00000008482	UPF1	100	94.269	Latimeria_chalumnae
ENSXMAG00000002540	-	100	94.918	ENSLOCG00000002072	upf1	100	94.918	Lepisosteus_oculatus
ENSXMAG00000002540	-	100	90.788	ENSLAFG00000014963	UPF1	100	90.877	Loxodonta_africana
ENSXMAG00000002540	-	100	91.897	ENSMFAG00000037748	UPF1	100	91.986	Macaca_fascicularis
ENSXMAG00000002540	-	100	91.652	ENSMMUG00000023286	UPF1	100	91.741	Macaca_mulatta
ENSXMAG00000002540	-	100	91.897	ENSMNEG00000000046	UPF1	100	91.986	Macaca_nemestrina
ENSXMAG00000002540	-	95	93.536	ENSMLEG00000028404	UPF1	99	93.536	Mandrillus_leucophaeus
ENSXMAG00000002540	-	100	97.550	ENSMAMG00000006231	-	100	97.550	Mastacembelus_armatus
ENSXMAG00000002540	-	100	91.689	ENSMAMG00000006229	upf1	100	92.315	Mastacembelus_armatus
ENSXMAG00000002540	-	100	91.943	ENSMZEG00005003489	upf1	100	92.280	Maylandia_zebra
ENSXMAG00000002540	-	100	98.004	ENSMZEG00005016386	-	100	98.004	Maylandia_zebra
ENSXMAG00000002540	-	95	93.067	ENSMGAG00000004745	UPF1	100	93.067	Meleagris_gallopavo
ENSXMAG00000002540	-	95	92.871	ENSMAUG00000011398	Upf1	95	92.395	Mesocricetus_auratus
ENSXMAG00000002540	-	100	91.882	ENSMICG00000001659	UPF1	100	91.971	Microcebus_murinus
ENSXMAG00000002540	-	100	91.030	ENSMOCG00000005699	Upf1	100	90.764	Microtus_ochrogaster
ENSXMAG00000002540	-	100	92.350	ENSMMOG00000007881	upf1	100	92.630	Mola_mola
ENSXMAG00000002540	-	95	95.602	ENSMMOG00000007537	-	99	95.602	Mola_mola
ENSXMAG00000002540	-	100	91.005	ENSMODG00000003689	UPF1	100	91.182	Monodelphis_domestica
ENSXMAG00000002540	-	100	95.750	ENSMALG00000018100	-	100	95.750	Monopterus_albus
ENSXMAG00000002540	-	100	92.623	ENSMALG00000000144	upf1	100	92.623	Monopterus_albus
ENSXMAG00000002540	-	100	91.667	MGP_CAROLIEiJ_G0031142	Upf1	100	91.308	Mus_caroli
ENSXMAG00000002540	-	100	91.667	ENSMUSG00000058301	Upf1	100	91.308	Mus_musculus
ENSXMAG00000002540	-	100	91.667	MGP_PahariEiJ_G0021607	Upf1	100	91.308	Mus_pahari
ENSXMAG00000002540	-	100	91.667	MGP_SPRETEiJ_G0032260	Upf1	100	91.308	Mus_spretus
ENSXMAG00000002540	-	100	91.971	ENSMPUG00000015516	UPF1	100	92.061	Mustela_putorius_furo
ENSXMAG00000002540	-	99	91.764	ENSMLUG00000012122	UPF1	99	91.853	Myotis_lucifugus
ENSXMAG00000002540	-	100	90.700	ENSNGAG00000024107	Upf1	100	90.345	Nannospalax_galili
ENSXMAG00000002540	-	100	94.401	ENSNBRG00000022069	-	100	96.896	Neolamprologus_brichardi
ENSXMAG00000002540	-	100	91.371	ENSNBRG00000000670	upf1	100	91.190	Neolamprologus_brichardi
ENSXMAG00000002540	-	95	87.738	ENSNLEG00000006062	UPF1	99	87.738	Nomascus_leucogenys
ENSXMAG00000002540	-	83	88.650	ENSMEUG00000014146	-	83	88.650	Notamacropus_eugenii
ENSXMAG00000002540	-	95	87.140	ENSOPRG00000014018	UPF1	99	87.140	Ochotona_princeps
ENSXMAG00000002540	-	100	92.529	ENSODEG00000012426	UPF1	100	92.079	Octodon_degus
ENSXMAG00000002540	-	100	92.122	ENSONIG00000010452	upf1	100	92.460	Oreochromis_niloticus
ENSXMAG00000002540	-	100	98.004	ENSONIG00000012729	-	100	98.004	Oreochromis_niloticus
ENSXMAG00000002540	-	100	91.312	ENSOANG00000004568	UPF1	100	91.223	Ornithorhynchus_anatinus
ENSXMAG00000002540	-	100	97.187	ENSORLG00000008453	upf1	100	97.187	Oryzias_latipes
ENSXMAG00000002540	-	100	97.099	ENSORLG00020014758	upf1	100	97.099	Oryzias_latipes_hni
ENSXMAG00000002540	-	100	97.099	ENSORLG00015010165	upf1	100	97.099	Oryzias_latipes_hsok
ENSXMAG00000002540	-	100	97.641	ENSOMEG00000003665	upf1	100	97.641	Oryzias_melastigma
ENSXMAG00000002540	-	100	92.061	ENSOGAG00000012866	UPF1	100	92.150	Otolemur_garnettii
ENSXMAG00000002540	-	96	90.432	ENSOARG00000010739	UPF1	100	90.248	Ovis_aries
ENSXMAG00000002540	-	95	93.371	ENSPPAG00000043884	UPF1	96	93.371	Pan_paniscus
ENSXMAG00000002540	-	100	91.158	ENSPPRG00000023470	UPF1	100	91.247	Panthera_pardus
ENSXMAG00000002540	-	95	91.954	ENSPTIG00000010159	UPF1	99	91.954	Panthera_tigris_altaica
ENSXMAG00000002540	-	100	91.897	ENSPTRG00000010721	UPF1	100	91.986	Pan_troglodytes
ENSXMAG00000002540	-	100	91.897	ENSPANG00000008847	UPF1	100	91.986	Papio_anubis
ENSXMAG00000002540	-	92	94.940	ENSPKIG00000006069	upf1	95	95.871	Paramormyrops_kingsleyae
ENSXMAG00000002540	-	69	93.211	ENSPSIG00000009491	UPF1	100	93.211	Pelodiscus_sinensis
ENSXMAG00000002540	-	100	90.687	ENSPMGG00000017327	upf1	100	90.868	Periophthalmus_magnuspinnatus
ENSXMAG00000002540	-	100	91.030	ENSPEMG00000001085	Upf1	100	90.675	Peromyscus_maniculatus_bairdii
ENSXMAG00000002540	-	100	87.805	ENSPMAG00000001206	upf1	100	87.805	Petromyzon_marinus
ENSXMAG00000002540	-	100	92.232	ENSPCIG00000006156	UPF1	100	92.321	Phascolarctos_cinereus
ENSXMAG00000002540	-	100	91.007	ENSPLAG00000018155	-	100	90.378	Poecilia_latipinna
ENSXMAG00000002540	-	100	99.727	ENSPLAG00000016232	-	100	99.727	Poecilia_latipinna
ENSXMAG00000002540	-	100	99.818	ENSPMEG00000016319	-	100	99.818	Poecilia_mexicana
ENSXMAG00000002540	-	100	91.576	ENSPMEG00000011443	-	100	91.447	Poecilia_mexicana
ENSXMAG00000002540	-	100	99.454	ENSPREG00000011247	-	100	99.454	Poecilia_reticulata
ENSXMAG00000002540	-	100	91.113	ENSPREG00000009940	upf1	100	90.754	Poecilia_reticulata
ENSXMAG00000002540	-	100	86.384	ENSPPYG00000009752	UPF1	100	86.372	Pongo_abelii
ENSXMAG00000002540	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSXMAG00000002540	-	100	91.644	ENSPCOG00000023813	UPF1	100	91.733	Propithecus_coquereli
ENSXMAG00000002540	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSXMAG00000002540	-	100	91.943	ENSPNYG00000003694	upf1	100	92.280	Pundamilia_nyererei
ENSXMAG00000002540	-	100	98.004	ENSPNYG00000016731	-	100	98.004	Pundamilia_nyererei
ENSXMAG00000002540	-	100	94.198	ENSPNAG00000025614	upf1	100	93.744	Pygocentrus_nattereri
ENSXMAG00000002540	-	100	91.667	ENSRNOG00000020134	Upf1	100	91.308	Rattus_norvegicus
ENSXMAG00000002540	-	95	91.160	ENSRBIG00000013894	UPF1	98	94.317	Rhinopithecus_bieti
ENSXMAG00000002540	-	95	93.536	ENSRROG00000040935	UPF1	98	94.317	Rhinopithecus_roxellana
ENSXMAG00000002540	-	73	57.822	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSXMAG00000002540	-	94	93.792	ENSSBOG00000023632	UPF1	96	93.792	Saimiri_boliviensis_boliviensis
ENSXMAG00000002540	-	95	93.454	ENSSHAG00000010499	UPF1	100	93.454	Sarcophilus_harrisii
ENSXMAG00000002540	-	100	95.100	ENSSFOG00015021095	upf1	100	95.100	Scleropages_formosus
ENSXMAG00000002540	-	100	91.137	ENSSMAG00000005055	upf1	100	91.764	Scophthalmus_maximus
ENSXMAG00000002540	-	100	97.913	ENSSMAG00000021018	-	100	97.913	Scophthalmus_maximus
ENSXMAG00000002540	-	100	91.510	ENSSDUG00000013320	upf1	100	92.404	Seriola_dumerili
ENSXMAG00000002540	-	100	98.094	ENSSDUG00000009629	-	100	98.094	Seriola_dumerili
ENSXMAG00000002540	-	100	92.335	ENSSLDG00000020868	upf1	100	92.876	Seriola_lalandi_dorsalis
ENSXMAG00000002540	-	100	98.094	ENSSLDG00000006878	-	100	98.094	Seriola_lalandi_dorsalis
ENSXMAG00000002540	-	100	92.356	ENSSPUG00000010538	UPF1	100	92.446	Sphenodon_punctatus
ENSXMAG00000002540	-	100	98.002	ENSSPAG00000011521	-	100	98.002	Stegastes_partitus
ENSXMAG00000002540	-	100	90.636	ENSSPAG00000000003	upf1	100	90.909	Stegastes_partitus
ENSXMAG00000002540	-	100	92.129	ENSSSCG00000039301	UPF1	99	94.061	Sus_scrofa
ENSXMAG00000002540	-	83	86.489	ENSTGUG00000001057	UPF1	100	90.533	Taeniopygia_guttata
ENSXMAG00000002540	-	100	92.539	ENSTRUG00000000150	upf1	100	92.539	Takifugu_rubripes
ENSXMAG00000002540	-	100	96.636	ENSTRUG00000005131	-	100	96.636	Takifugu_rubripes
ENSXMAG00000002540	-	100	88.640	ENSTTRG00000011544	UPF1	100	88.640	Tursiops_truncatus
ENSXMAG00000002540	-	100	91.882	ENSUAMG00000007093	UPF1	100	91.971	Ursus_americanus
ENSXMAG00000002540	-	95	94.061	ENSUMAG00000006652	UPF1	99	94.824	Ursus_maritimus
ENSXMAG00000002540	-	100	91.971	ENSVVUG00000007797	UPF1	100	92.061	Vulpes_vulpes
ENSXMAG00000002540	-	100	79.648	ENSXETG00000013602	upf1	100	79.648	Xenopus_tropicalis
ENSXMAG00000002540	-	94	99.903	ENSXCOG00000005764	-	100	99.903	Xiphophorus_couchianus
ENSXMAG00000002540	-	97	91.423	ENSXCOG00000015275	-	96	91.329	Xiphophorus_couchianus
ENSXMAG00000002540	-	100	91.621	ENSXMAG00000001703	-	100	91.530	Xiphophorus_maculatus