EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000002555 (Gene tree)
Gene ID
102221478
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
6012 bases
Position
chr3:29360592-29366603
Accession
102221478
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000002568PABPPF00658.186.1e-3211
ENSXMAP00000033371PABPPF00658.186.9e-3211
ENSXMAP00000002568RRM_5PF13893.64.7e-0812
ENSXMAP00000002568RRM_5PF13893.64.7e-0822
ENSXMAP00000033371RRM_5PF13893.65.8e-0811
ENSXMAP00000002568RRM_1PF00076.227.3e-9314
ENSXMAP00000002568RRM_1PF00076.227.3e-9324
ENSXMAP00000002568RRM_1PF00076.227.3e-9334
ENSXMAP00000002568RRM_1PF00076.227.3e-9344
ENSXMAP00000033371RRM_1PF00076.229.2e-9314
ENSXMAP00000033371RRM_1PF00076.229.2e-9324
ENSXMAP00000033371RRM_1PF00076.229.2e-9334
ENSXMAP00000033371RRM_1PF00076.229.2e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000033271-2611XM_005803454ENSXMAP00000033371635 (aa)XP_005803511UPI0002939694
ENSXMAT00000002573-1824-ENSXMAP00000002568607 (aa)-M3ZK26
Gene Model
Click here to download ENSXMAG00000002555's gene model file
Pathways
Pathway IDPathway NameSource
xma03013RNA transportKEGG
xma03015mRNA surveillance pathwayKEGG
xma03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002555's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000002555pabpc1a6080.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSXMAG00000002555pabpc1a6080.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSXMAG00000002555pabpc1a10097.953ENSAPOG00000015105pabpc1a10097.953Acanthochromis_polyacanthus
ENSXMAG00000002555pabpc1a10090.752ENSAPOG00000017776pabpc1b10090.439Acanthochromis_polyacanthus
ENSXMAG00000002555pabpc1a6080.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSXMAG00000002555pabpc1a10087.801ENSACIG00000018366pabpc1b10087.640Amphilophus_citrinellus
ENSXMAG00000002555pabpc1a10097.795ENSACIG00000004685pabpc1a10097.795Amphilophus_citrinellus
ENSXMAG00000002555pabpc1a10098.110ENSAOCG00000011656pabpc1a10098.110Amphiprion_ocellaris
ENSXMAG00000002555pabpc1a10090.439ENSAOCG00000019839pabpc1b10090.125Amphiprion_ocellaris
ENSXMAG00000002555pabpc1a10098.110ENSAPEG00000006963pabpc1a10098.110Amphiprion_percula
ENSXMAG00000002555pabpc1a10090.439ENSAPEG00000010435pabpc1b10090.125Amphiprion_percula
ENSXMAG00000002555pabpc1a10089.515ENSATEG00000012917pabpc1b10089.515Anabas_testudineus
ENSXMAG00000002555pabpc1a10098.268ENSATEG00000024852pabpc1a10098.268Anabas_testudineus
ENSXMAG00000002555pabpc1a6080.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSXMAG00000002555pabpc1a6080.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSXMAG00000002555pabpc1a10097.480ENSACLG00000009399pabpc1a10097.480Astatotilapia_calliptera
ENSXMAG00000002555pabpc1a10089.028ENSACLG00000014335pabpc1b10088.871Astatotilapia_calliptera
ENSXMAG00000002555pabpc1a10090.439ENSAMXG00000008599pabpc1b10090.282Astyanax_mexicanus
ENSXMAG00000002555pabpc1a6277.033ENSBTAG00000052491-9877.033Bos_taurus
ENSXMAG00000002555pabpc1a6279.024ENSBTAG00000050902-9879.024Bos_taurus
ENSXMAG00000002555pabpc1a6080.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSXMAG00000002555pabpc1a6279.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSXMAG00000002555pabpc1a6080.102ENSCHIG00000011138-9880.102Capra_hircus
ENSXMAG00000002555pabpc1a6080.102ENSCHIG00000006283-9880.102Capra_hircus
ENSXMAG00000002555pabpc1a6080.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSXMAG00000002555pabpc1a6080.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSXMAG00000002555pabpc1a6080.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSXMAG00000002555pabpc1a6080.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSXMAG00000002555pabpc1a6080.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSXMAG00000002555pabpc1a6078.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSXMAG00000002555pabpc1a6078.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSXMAG00000002555pabpc1a6080.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSXMAG00000002555pabpc1a6079.670ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSXMAG00000002555pabpc1a10088.871ENSCSEG00000015241-10088.871Cynoglossus_semilaevis
ENSXMAG00000002555pabpc1a9997.627ENSCSEG00000013324pabpc1a10097.627Cynoglossus_semilaevis
ENSXMAG00000002555pabpc1a10098.583ENSCVAG00000021872pabpc1a10098.583Cyprinodon_variegatus
ENSXMAG00000002555pabpc1a10087.637ENSCVAG00000005489pabpc1b10087.480Cyprinodon_variegatus
ENSXMAG00000002555pabpc1a10089.185ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSXMAG00000002555pabpc1a10091.536ENSDARG00000017219pabpc1a10091.536Danio_rerio
ENSXMAG00000002555pabpc1a6080.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSXMAG00000002555pabpc1a6077.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSXMAG00000002555pabpc1a6278.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSXMAG00000002555pabpc1a6278.641ENSECAG00000002620-9878.641Equus_caballus
ENSXMAG00000002555pabpc1a6276.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSXMAG00000002555pabpc1a9994.182ENSELUG00000003614pabpc1a10094.182Esox_lucius
ENSXMAG00000002555pabpc1a6258.621ENSELUG00000005389-9758.621Esox_lucius
ENSXMAG00000002555pabpc1a10088.594ENSELUG00000015062-10088.281Esox_lucius
ENSXMAG00000002555pabpc1a6080.102ENSFCAG00000039701-9880.102Felis_catus
ENSXMAG00000002555pabpc1a6080.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSXMAG00000002555pabpc1a10089.342ENSFHEG00000008186pabpc1b10089.498Fundulus_heteroclitus
ENSXMAG00000002555pabpc1a10098.268ENSFHEG00000018979pabpc1a10098.268Fundulus_heteroclitus
ENSXMAG00000002555pabpc1a10080.930ENSGMOG00000002448-10080.310Gadus_morhua
ENSXMAG00000002555pabpc1a9994.127ENSGMOG00000013448pabpc1a9993.818Gadus_morhua
ENSXMAG00000002555pabpc1a10098.740ENSGAFG00000019750pabpc1a10098.740Gambusia_affinis
ENSXMAG00000002555pabpc1a10090.125ENSGAFG00000010193pabpc1b10090.125Gambusia_affinis
ENSXMAG00000002555pabpc1a10097.795ENSGACG00000003572pabpc1a10097.795Gasterosteus_aculeatus
ENSXMAG00000002555pabpc1a10088.527ENSGACG00000003771pabpc1b10088.527Gasterosteus_aculeatus
ENSXMAG00000002555pabpc1a6080.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSXMAG00000002555pabpc1a6080.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSXMAG00000002555pabpc1a10089.028ENSHBUG00000002075pabpc1b10088.871Haplochromis_burtoni
ENSXMAG00000002555pabpc1a10097.480ENSHBUG00000020487pabpc1a10097.480Haplochromis_burtoni
ENSXMAG00000002555pabpc1a6079.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSXMAG00000002555pabpc1a6079.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSXMAG00000002555pabpc1a6079.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSXMAG00000002555pabpc1a10097.795ENSHCOG00000013502pabpc1a10097.795Hippocampus_comes
ENSXMAG00000002555pabpc1a8681.720ENSHCOG00000003175pabpc1b9981.720Hippocampus_comes
ENSXMAG00000002555pabpc1a10090.551ENSIPUG00000008848pabpc1a10090.394Ictalurus_punctatus
ENSXMAG00000002555pabpc1a8158.209ENSIPUG00000018724-7658.209Ictalurus_punctatus
ENSXMAG00000002555pabpc1a10088.998ENSIPUG00000010791-10088.725Ictalurus_punctatus
ENSXMAG00000002555pabpc1a7555.509ENSIPUG00000021244-6555.301Ictalurus_punctatus
ENSXMAG00000002555pabpc1a6079.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSXMAG00000002555pabpc1a6079.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSXMAG00000002555pabpc1a6078.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSXMAG00000002555pabpc1a10088.365ENSKMAG00000008049pabpc1b10088.522Kryptolebias_marmoratus
ENSXMAG00000002555pabpc1a10098.110ENSKMAG00000000605pabpc1a10098.110Kryptolebias_marmoratus
ENSXMAG00000002555pabpc1a10089.342ENSLBEG00000026845pabpc1b10089.028Labrus_bergylta
ENSXMAG00000002555pabpc1a10097.953ENSLBEG00000024002-10097.953Labrus_bergylta
ENSXMAG00000002555pabpc1a6078.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSXMAG00000002555pabpc1a6079.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSXMAG00000002555pabpc1a6080.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSXMAG00000002555pabpc1a6080.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSXMAG00000002555pabpc1a6080.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSXMAG00000002555pabpc1a6080.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSXMAG00000002555pabpc1a6080.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSXMAG00000002555pabpc1a10089.498ENSMAMG00000014610pabpc1b10089.655Mastacembelus_armatus
ENSXMAG00000002555pabpc1a10098.425ENSMAMG00000004502-10098.425Mastacembelus_armatus
ENSXMAG00000002555pabpc1a10089.028ENSMZEG00005026745pabpc1b10088.871Maylandia_zebra
ENSXMAG00000002555pabpc1a10097.480ENSMZEG00005025416pabpc1a10097.480Maylandia_zebra
ENSXMAG00000002555pabpc1a6080.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSXMAG00000002555pabpc1a10088.013ENSMMOG00000018009pabpc1b10087.849Mola_mola
ENSXMAG00000002555pabpc1a10095.938ENSMMOG00000018044pabpc1a10095.938Mola_mola
ENSXMAG00000002555pabpc1a9966.354ENSMODG00000015024-9965.831Monodelphis_domestica
ENSXMAG00000002555pabpc1a9872.204ENSMODG00000013156-9872.524Monodelphis_domestica
ENSXMAG00000002555pabpc1a10085.550ENSMALG00000006066pabpc1b10085.243Monopterus_albus
ENSXMAG00000002555pabpc1a10097.795ENSMALG00000013020-10097.795Monopterus_albus
ENSXMAG00000002555pabpc1a6081.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSXMAG00000002555pabpc1a10097.323ENSNBRG00000003068-10097.323Neolamprologus_brichardi
ENSXMAG00000002555pabpc1a10089.028ENSNBRG00000013737pabpc1b10088.871Neolamprologus_brichardi
ENSXMAG00000002555pabpc1a6080.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSXMAG00000002555pabpc1a6079.592ENSODEG00000018540-9879.592Octodon_degus
ENSXMAG00000002555pabpc1a10089.342ENSONIG00000002717pabpc1b10089.185Oreochromis_niloticus
ENSXMAG00000002555pabpc1a10097.008ENSONIG00000006871-10097.008Oreochromis_niloticus
ENSXMAG00000002555pabpc1a6080.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSXMAG00000002555pabpc1a10096.850ENSORLG00000002691pabpc1a10096.850Oryzias_latipes
ENSXMAG00000002555pabpc1a10084.301ENSORLG00000003008-10083.987Oryzias_latipes
ENSXMAG00000002555pabpc1a10084.301ENSORLG00020022259-10083.987Oryzias_latipes_hni
ENSXMAG00000002555pabpc1a10097.008ENSORLG00020022398pabpc1a10097.008Oryzias_latipes_hni
ENSXMAG00000002555pabpc1a10084.615ENSORLG00015010932-10084.301Oryzias_latipes_hsok
ENSXMAG00000002555pabpc1a10096.850ENSORLG00015013633pabpc110096.850Oryzias_latipes_hsok
ENSXMAG00000002555pabpc1a10097.795ENSOMEG00000020219pabpc1a10097.795Oryzias_melastigma
ENSXMAG00000002555pabpc1a9481.465ENSOMEG00000013627pabpc1b10081.465Oryzias_melastigma
ENSXMAG00000002555pabpc1a6080.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSXMAG00000002555pabpc1a6080.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSXMAG00000002555pabpc1a6080.102ENSOARG00000005943-9880.102Ovis_aries
ENSXMAG00000002555pabpc1a6080.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSXMAG00000002555pabpc1a6080.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSXMAG00000002555pabpc1a6080.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSXMAG00000002555pabpc1a6080.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSXMAG00000002555pabpc1a6080.102ENSPANG00000011549-9880.102Papio_anubis
ENSXMAG00000002555pabpc1a10089.969ENSPKIG00000005676pabpc1b10089.969Paramormyrops_kingsleyae
ENSXMAG00000002555pabpc1a7490.728ENSPMGG00000023134-9890.728Periophthalmus_magnuspinnatus
ENSXMAG00000002555pabpc1a7793.390ENSPMGG00000022487pabpc1a9297.753Periophthalmus_magnuspinnatus
ENSXMAG00000002555pabpc1a9971.474ENSPCIG00000016995-5571.429Phascolarctos_cinereus
ENSXMAG00000002555pabpc1a10097.063ENSPFOG00000010815pabpc1a10097.063Poecilia_formosa
ENSXMAG00000002555pabpc1a10089.655ENSPFOG00000005917pabpc1b10089.812Poecilia_formosa
ENSXMAG00000002555pabpc1a10099.055ENSPLAG00000004114pabpc1a10099.055Poecilia_latipinna
ENSXMAG00000002555pabpc1a10089.969ENSPLAG00000001388pabpc1b10090.125Poecilia_latipinna
ENSXMAG00000002555pabpc1a10089.655ENSPMEG00000014399pabpc1b10089.812Poecilia_mexicana
ENSXMAG00000002555pabpc1a10099.055ENSPMEG00000001334pabpc1a10099.055Poecilia_mexicana
ENSXMAG00000002555pabpc1a10099.176ENSPREG00000019595pabpc1a10099.176Poecilia_reticulata
ENSXMAG00000002555pabpc1a10089.969ENSPREG00000010911pabpc1b10090.125Poecilia_reticulata
ENSXMAG00000002555pabpc1a6080.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSXMAG00000002555pabpc1a6280.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSXMAG00000002555pabpc1a6079.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSXMAG00000002555pabpc1a6280.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSXMAG00000002555pabpc1a10097.480ENSPNYG00000005192pabpc1a10097.480Pundamilia_nyererei
ENSXMAG00000002555pabpc1a10089.028ENSPNYG00000012578pabpc1b10088.871Pundamilia_nyererei
ENSXMAG00000002555pabpc1a10089.969ENSPNAG00000024626pabpc1b10089.812Pygocentrus_nattereri
ENSXMAG00000002555pabpc1a10091.366ENSPNAG00000028408pabpc1a10091.052Pygocentrus_nattereri
ENSXMAG00000002555pabpc1a6080.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSXMAG00000002555pabpc1a9989.202ENSRBIG00000028738-9589.202Rhinopithecus_bieti
ENSXMAG00000002555pabpc1a6080.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSXMAG00000002555pabpc1a9863.942ENSSHAG00000000511-10063.622Sarcophilus_harrisii
ENSXMAG00000002555pabpc1a10090.424ENSSFOG00015002752-10090.110Scleropages_formosus
ENSXMAG00000002555pabpc1a10089.796ENSSFOG00015006662pabpc1a10089.796Scleropages_formosus
ENSXMAG00000002555pabpc1a7178.613ENSSFOG00015019668-8978.613Scleropages_formosus
ENSXMAG00000002555pabpc1a10088.871ENSSMAG00000006869pabpc1b10088.715Scophthalmus_maximus
ENSXMAG00000002555pabpc1a10097.638ENSSMAG00000010803pabpc1a10097.638Scophthalmus_maximus
ENSXMAG00000002555pabpc1a10088.401ENSSDUG00000011965pabpc1b10088.245Seriola_dumerili
ENSXMAG00000002555pabpc1a10098.425ENSSDUG00000006675pabpc1a10098.425Seriola_dumerili
ENSXMAG00000002555pabpc1a10098.425ENSSLDG00000011661pabpc1a10098.425Seriola_lalandi_dorsalis
ENSXMAG00000002555pabpc1a10090.047ENSSLDG00000014156pabpc1b10089.891Seriola_lalandi_dorsalis
ENSXMAG00000002555pabpc1a10098.268ENSSPAG00000014453-10098.268Stegastes_partitus
ENSXMAG00000002555pabpc1a10090.439ENSSPAG00000019265pabpc1b10090.282Stegastes_partitus
ENSXMAG00000002555pabpc1a6080.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSXMAG00000002555pabpc1a6080.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSXMAG00000002555pabpc1a10095.283ENSTRUG00000011577-10095.755Takifugu_rubripes
ENSXMAG00000002555pabpc1a10086.072ENSTRUG00000003767-10086.072Takifugu_rubripes
ENSXMAG00000002555pabpc1a10086.604ENSTNIG00000009153pabpc1b10085.981Tetraodon_nigroviridis
ENSXMAG00000002555pabpc1a10092.558ENSTNIG00000013307pabpc1a10093.023Tetraodon_nigroviridis
ENSXMAG00000002555pabpc1a6080.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSXMAG00000002555pabpc1a6080.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSXMAG00000002555pabpc1a9754.516ENSUMAG00000023926-8969.337Ursus_maritimus
ENSXMAG00000002555pabpc1a6080.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSXMAG00000002555pabpc1a6179.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSXMAG00000002555pabpc1a9747.059ENSXETG00000015439-9747.059Xenopus_tropicalis
ENSXMAG00000002555pabpc1a10086.342ENSXCOG00000019901pabpc1b10086.185Xiphophorus_couchianus
ENSXMAG00000002555pabpc1a10098.847ENSXCOG00000017066pabpc1a10098.847Xiphophorus_couchianus
ENSXMAG00000002555pabpc1a10090.125ENSXMAG00000003753pabpc1b10090.125Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us