EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002753 (Gene tree)
Gene ID: 102222413
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 6728 bases
Position: chr12:24572368-24579095
Accession: 102222413
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002773	PRP21_like_P	PF12230.8	6.8e-53	1	1
ENSXMAP00000021464	PRP21_like_P	PF12230.8	7e-53	1	1
ENSXMAP00000021464	Surp	PF01805.20	7.7e-46	1	2
ENSXMAP00000021464	Surp	PF01805.20	7.7e-46	2	2
ENSXMAP00000002773	Surp	PF01805.20	7.8e-46	1	2
ENSXMAP00000002773	Surp	PF01805.20	7.8e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000002778	-	3269	-	ENSXMAP00000002773	773 (aa)	-	M3ZKN1
ENSXMAT00000022197	-	3302	XM_005814765	ENSXMAP00000021464	784 (aa)	XP_005814822	UPI000293ADCF

Gene Model

Click here to download ENSXMAG00000002753's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002753's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002753	sf3a1	97	84.837	ENSG00000099995	SF3A1	100	83.145	Homo_sapiens
ENSXMAG00000002753	sf3a1	100	94.917	ENSAPOG00000020465	sf3a1	100	94.917	Acanthochromis_polyacanthus
ENSXMAG00000002753	sf3a1	97	84.706	ENSAMEG00000007737	SF3A1	100	82.811	Ailuropoda_melanoleuca
ENSXMAG00000002753	sf3a1	100	94.663	ENSACIG00000020672	sf3a1	100	94.663	Amphilophus_citrinellus
ENSXMAG00000002753	sf3a1	100	94.790	ENSAOCG00000003060	sf3a1	100	94.790	Amphiprion_ocellaris
ENSXMAG00000002753	sf3a1	100	94.917	ENSAPEG00000010735	sf3a1	100	94.917	Amphiprion_percula
ENSXMAG00000002753	sf3a1	98	93.289	ENSATEG00000021201	sf3a1	96	94.248	Anabas_testudineus
ENSXMAG00000002753	sf3a1	96	83.509	ENSAPLG00000009057	SF3A1	100	83.291	Anas_platyrhynchos
ENSXMAG00000002753	sf3a1	100	80.370	ENSACAG00000009415	SF3A1	100	80.123	Anolis_carolinensis
ENSXMAG00000002753	sf3a1	99	83.269	ENSANAG00000032045	SF3A1	100	82.647	Aotus_nancymaae
ENSXMAG00000002753	sf3a1	100	92.884	ENSACLG00000012622	sf3a1	100	93.774	Astatotilapia_calliptera
ENSXMAG00000002753	sf3a1	99	86.896	ENSAMXG00000005382	sf3a1	99	87.405	Astyanax_mexicanus
ENSXMAG00000002753	sf3a1	97	84.706	ENSBTAG00000003390	SF3A1	100	83.019	Bos_taurus
ENSXMAG00000002753	sf3a1	82	44.318	WBGene00004188	prp-21	90	44.444	Caenorhabditis_elegans
ENSXMAG00000002753	sf3a1	99	83.142	ENSCJAG00000010370	SF3A1	100	82.893	Callithrix_jacchus
ENSXMAG00000002753	sf3a1	97	84.706	ENSCAFG00000012559	SF3A1	100	83.019	Canis_familiaris
ENSXMAG00000002753	sf3a1	97	84.706	ENSCAFG00020000838	SF3A1	100	83.019	Canis_lupus_dingo
ENSXMAG00000002753	sf3a1	97	84.837	ENSCHIG00000018642	SF3A1	100	83.145	Capra_hircus
ENSXMAG00000002753	sf3a1	97	84.837	ENSTSYG00000004739	SF3A1	100	83.145	Carlito_syrichta
ENSXMAG00000002753	sf3a1	95	68.286	ENSCAPG00000015414	SF3A1	97	68.775	Cavia_aperea
ENSXMAG00000002753	sf3a1	99	83.205	ENSCPOG00000014589	SF3A1	100	82.893	Cavia_porcellus
ENSXMAG00000002753	sf3a1	99	83.269	ENSCCAG00000032006	SF3A1	100	82.647	Cebus_capucinus
ENSXMAG00000002753	sf3a1	97	84.837	ENSCATG00000029241	SF3A1	100	83.145	Cercocebus_atys
ENSXMAG00000002753	sf3a1	97	84.109	ENSCLAG00000006508	SF3A1	100	83.459	Chinchilla_lanigera
ENSXMAG00000002753	sf3a1	99	83.397	ENSCSAG00000009470	SF3A1	100	83.145	Chlorocebus_sabaeus
ENSXMAG00000002753	sf3a1	58	90.476	ENSCHOG00000005201	SF3A1	64	91.139	Choloepus_hoffmanni
ENSXMAG00000002753	sf3a1	100	80.682	ENSCPBG00000007595	SF3A1	100	81.967	Chrysemys_picta_bellii
ENSXMAG00000002753	sf3a1	97	52.551	ENSCING00000008526	-	98	52.046	Ciona_intestinalis
ENSXMAG00000002753	sf3a1	93	63.158	ENSCSAVG00000005608	-	100	50.769	Ciona_savignyi
ENSXMAG00000002753	sf3a1	99	83.397	ENSCANG00000033564	SF3A1	100	83.145	Colobus_angolensis_palliatus
ENSXMAG00000002753	sf3a1	97	84.474	ENSCGRG00001008933	Sf3a1	100	83.145	Cricetulus_griseus_chok1gshd
ENSXMAG00000002753	sf3a1	97	84.474	ENSCGRG00000006127	Sf3a1	100	83.145	Cricetulus_griseus_crigri
ENSXMAG00000002753	sf3a1	100	89.721	ENSCSEG00000010792	sf3a1	100	89.594	Cynoglossus_semilaevis
ENSXMAG00000002753	sf3a1	100	95.281	ENSCVAG00000004560	sf3a1	100	95.281	Cyprinodon_variegatus
ENSXMAG00000002753	sf3a1	100	85.932	ENSDARG00000041887	sf3a1	100	89.266	Danio_rerio
ENSXMAG00000002753	sf3a1	97	84.987	ENSDNOG00000010629	SF3A1	99	83.249	Dasypus_novemcinctus
ENSXMAG00000002753	sf3a1	97	84.706	ENSDORG00000005613	Sf3a1	100	83.019	Dipodomys_ordii
ENSXMAG00000002753	sf3a1	84	61.205	FBgn0266917	Sf3a1	84	57.829	Drosophila_melanogaster
ENSXMAG00000002753	sf3a1	86	82.759	ENSETEG00000017194	SF3A1	95	83.558	Echinops_telfairi
ENSXMAG00000002753	sf3a1	97	67.754	ENSEBUG00000001285	sf3a1	95	68.679	Eptatretus_burgeri
ENSXMAG00000002753	sf3a1	97	84.706	ENSEASG00005010254	SF3A1	100	83.459	Equus_asinus_asinus
ENSXMAG00000002753	sf3a1	97	84.706	ENSECAG00000023962	SF3A1	100	83.459	Equus_caballus
ENSXMAG00000002753	sf3a1	74	88.525	ENSEEUG00000003159	SF3A1	82	88.525	Erinaceus_europaeus
ENSXMAG00000002753	sf3a1	100	86.185	ENSELUG00000022578	sf3a1	100	87.072	Esox_lucius
ENSXMAG00000002753	sf3a1	97	84.444	ENSFCAG00000011932	SF3A1	100	82.767	Felis_catus
ENSXMAG00000002753	sf3a1	96	82.011	ENSFALG00000006944	SF3A1	100	81.990	Ficedula_albicollis
ENSXMAG00000002753	sf3a1	97	84.575	ENSFDAG00000009560	SF3A1	100	82.893	Fukomys_damarensis
ENSXMAG00000002753	sf3a1	100	96.310	ENSFHEG00000010866	sf3a1	100	96.310	Fundulus_heteroclitus
ENSXMAG00000002753	sf3a1	100	87.134	ENSGMOG00000016024	sf3a1	100	85.372	Gadus_morhua
ENSXMAG00000002753	sf3a1	96	83.620	ENSGALG00000007937	SF3A1	100	82.183	Gallus_gallus
ENSXMAG00000002753	sf3a1	100	98.597	ENSGAFG00000009111	sf3a1	100	98.597	Gambusia_affinis
ENSXMAG00000002753	sf3a1	100	88.987	ENSGACG00000011893	sf3a1	100	88.608	Gasterosteus_aculeatus
ENSXMAG00000002753	sf3a1	98	80.315	ENSGAGG00000000762	SF3A1	100	81.389	Gopherus_agassizii
ENSXMAG00000002753	sf3a1	97	84.837	ENSGGOG00000012631	SF3A1	100	83.145	Gorilla_gorilla
ENSXMAG00000002753	sf3a1	100	94.282	ENSHBUG00000015795	sf3a1	100	93.901	Haplochromis_burtoni
ENSXMAG00000002753	sf3a1	99	83.205	ENSHGLG00000007907	SF3A1	100	82.893	Heterocephalus_glaber_female
ENSXMAG00000002753	sf3a1	99	83.205	ENSHGLG00100013799	SF3A1	100	82.893	Heterocephalus_glaber_male
ENSXMAG00000002753	sf3a1	100	88.931	ENSHCOG00000015423	sf3a1	100	88.677	Hippocampus_comes
ENSXMAG00000002753	sf3a1	98	84.496	ENSIPUG00000002470	sf3a1	99	85.271	Ictalurus_punctatus
ENSXMAG00000002753	sf3a1	97	84.575	ENSSTOG00000013892	SF3A1	100	83.396	Ictidomys_tridecemlineatus
ENSXMAG00000002753	sf3a1	97	84.575	ENSJJAG00000022566	Sf3a1	100	83.166	Jaculus_jaculus
ENSXMAG00000002753	sf3a1	100	93.520	ENSKMAG00000002400	sf3a1	100	93.520	Kryptolebias_marmoratus
ENSXMAG00000002753	sf3a1	100	92.102	ENSLBEG00000022974	sf3a1	100	91.720	Labrus_bergylta
ENSXMAG00000002753	sf3a1	100	83.122	ENSLACG00000003565	SF3A1	100	83.291	Latimeria_chalumnae
ENSXMAG00000002753	sf3a1	100	86.220	ENSLOCG00000008251	sf3a1	99	86.979	Lepisosteus_oculatus
ENSXMAG00000002753	sf3a1	98	55.470	ENSLAFG00000026032	-	99	53.585	Loxodonta_africana
ENSXMAG00000002753	sf3a1	97	84.967	ENSLAFG00000000448	SF3A1	100	83.270	Loxodonta_africana
ENSXMAG00000002753	sf3a1	99	83.269	ENSMFAG00000031979	SF3A1	100	83.019	Macaca_fascicularis
ENSXMAG00000002753	sf3a1	99	83.269	ENSMMUG00000005547	SF3A1	100	83.019	Macaca_mulatta
ENSXMAG00000002753	sf3a1	99	83.397	ENSMNEG00000037229	SF3A1	100	83.145	Macaca_nemestrina
ENSXMAG00000002753	sf3a1	99	83.397	ENSMLEG00000041908	SF3A1	100	83.145	Mandrillus_leucophaeus
ENSXMAG00000002753	sf3a1	98	93.394	ENSMAMG00000006460	sf3a1	97	93.394	Mastacembelus_armatus
ENSXMAG00000002753	sf3a1	100	92.884	ENSMZEG00005009633	sf3a1	100	93.774	Maylandia_zebra
ENSXMAG00000002753	sf3a1	96	83.620	ENSMGAG00000001330	SF3A1	99	84.047	Meleagris_gallopavo
ENSXMAG00000002753	sf3a1	93	80.790	ENSMAUG00000020317	Sf3a1	100	77.525	Mesocricetus_auratus
ENSXMAG00000002753	sf3a1	97	84.837	ENSMICG00000010038	SF3A1	100	83.145	Microcebus_murinus
ENSXMAG00000002753	sf3a1	97	84.314	ENSMOCG00000008438	Sf3a1	100	83.270	Microtus_ochrogaster
ENSXMAG00000002753	sf3a1	100	88.662	ENSMMOG00000015588	sf3a1	99	89.427	Mola_mola
ENSXMAG00000002753	sf3a1	97	83.529	ENSMODG00000009270	SF3A1	100	82.746	Monodelphis_domestica
ENSXMAG00000002753	sf3a1	100	92.893	ENSMALG00000000148	sf3a1	100	93.274	Monopterus_albus
ENSXMAG00000002753	sf3a1	97	84.868	MGP_CAROLIEiJ_G0016029	Sf3a1	99	83.081	Mus_caroli
ENSXMAG00000002753	sf3a1	97	84.868	ENSMUSG00000002129	Sf3a1	99	83.081	Mus_musculus
ENSXMAG00000002753	sf3a1	97	84.737	MGP_PahariEiJ_G0016862	Sf3a1	99	83.081	Mus_pahari
ENSXMAG00000002753	sf3a1	97	84.868	MGP_SPRETEiJ_G0016870	Sf3a1	99	83.081	Mus_spretus
ENSXMAG00000002753	sf3a1	97	84.444	ENSMPUG00000013144	SF3A1	100	83.145	Mustela_putorius_furo
ENSXMAG00000002753	sf3a1	99	83.184	ENSMLUG00000002139	SF3A1	100	82.893	Myotis_lucifugus
ENSXMAG00000002753	sf3a1	97	84.575	ENSNGAG00000016977	Sf3a1	100	83.333	Nannospalax_galili
ENSXMAG00000002753	sf3a1	100	93.655	ENSNBRG00000016642	sf3a1	100	93.274	Neolamprologus_brichardi
ENSXMAG00000002753	sf3a1	99	83.397	ENSNLEG00000003686	SF3A1	100	83.145	Nomascus_leucogenys
ENSXMAG00000002753	sf3a1	94	75.546	ENSMEUG00000008741	SF3A1	100	74.639	Notamacropus_eugenii
ENSXMAG00000002753	sf3a1	97	85.229	ENSOPRG00000016636	SF3A1	100	83.270	Ochotona_princeps
ENSXMAG00000002753	sf3a1	97	84.575	ENSODEG00000002571	SF3A1	100	83.375	Octodon_degus
ENSXMAG00000002753	sf3a1	100	94.282	ENSONIG00000010848	sf3a1	100	93.901	Oreochromis_niloticus
ENSXMAG00000002753	sf3a1	97	84.706	ENSOCUG00000007633	SF3A1	100	83.019	Oryctolagus_cuniculus
ENSXMAG00000002753	sf3a1	98	92.754	ENSORLG00000013050	sf3a1	100	92.490	Oryzias_latipes
ENSXMAG00000002753	sf3a1	99	90.746	ENSORLG00020003236	sf3a1	98	90.488	Oryzias_latipes_hni
ENSXMAG00000002753	sf3a1	100	92.630	ENSORLG00015017411	sf3a1	100	92.376	Oryzias_latipes_hsok
ENSXMAG00000002753	sf3a1	100	93.139	ENSOMEG00000013362	sf3a1	100	92.884	Oryzias_melastigma
ENSXMAG00000002753	sf3a1	97	84.837	ENSOGAG00000012931	SF3A1	100	83.145	Otolemur_garnettii
ENSXMAG00000002753	sf3a1	97	83.529	ENSOARG00000006849	SF3A1	100	81.887	Ovis_aries
ENSXMAG00000002753	sf3a1	97	84.052	ENSPPAG00000041790	SF3A1	100	82.264	Pan_paniscus
ENSXMAG00000002753	sf3a1	97	84.444	ENSPPRG00000004391	SF3A1	100	82.767	Panthera_pardus
ENSXMAG00000002753	sf3a1	97	84.314	ENSPTIG00000000844	SF3A1	99	84.837	Panthera_tigris_altaica
ENSXMAG00000002753	sf3a1	97	84.837	ENSPTRG00000014240	SF3A1	100	83.145	Pan_troglodytes
ENSXMAG00000002753	sf3a1	99	83.397	ENSPANG00000020772	SF3A1	100	83.145	Papio_anubis
ENSXMAG00000002753	sf3a1	79	89.011	ENSPSIG00000012803	SF3A1	99	89.011	Pelodiscus_sinensis
ENSXMAG00000002753	sf3a1	97	88.860	ENSPMGG00000023096	sf3a1	100	90.826	Periophthalmus_magnuspinnatus
ENSXMAG00000002753	sf3a1	97	84.605	ENSPEMG00000009494	Sf3a1	100	83.270	Peromyscus_maniculatus_bairdii
ENSXMAG00000002753	sf3a1	70	77.737	ENSPMAG00000007139	-	93	78.102	Petromyzon_marinus
ENSXMAG00000002753	sf3a1	97	84.183	ENSPCIG00000022692	SF3A1	100	82.746	Phascolarctos_cinereus
ENSXMAG00000002753	sf3a1	100	87.150	ENSPFOG00000016768	sf3a1	100	87.183	Poecilia_formosa
ENSXMAG00000002753	sf3a1	100	98.346	ENSPLAG00000017268	sf3a1	100	98.346	Poecilia_latipinna
ENSXMAG00000002753	sf3a1	96	98.333	ENSPMEG00000019811	sf3a1	100	98.333	Poecilia_mexicana
ENSXMAG00000002753	sf3a1	100	98.473	ENSPREG00000010347	sf3a1	100	98.473	Poecilia_reticulata
ENSXMAG00000002753	sf3a1	99	83.397	ENSPPYG00000011707	SF3A1	100	83.145	Pongo_abelii
ENSXMAG00000002753	sf3a1	58	83.884	ENSPCAG00000003266	SF3A1	57	83.884	Procavia_capensis
ENSXMAG00000002753	sf3a1	97	84.575	ENSPCOG00000026630	SF3A1	100	82.893	Propithecus_coquereli
ENSXMAG00000002753	sf3a1	95	84.471	ENSPVAG00000017719	SF3A1	94	84.605	Pteropus_vampyrus
ENSXMAG00000002753	sf3a1	100	94.155	ENSPNYG00000018706	sf3a1	100	93.774	Pundamilia_nyererei
ENSXMAG00000002753	sf3a1	99	87.150	ENSPNAG00000003721	sf3a1	99	86.896	Pygocentrus_nattereri
ENSXMAG00000002753	sf3a1	98	83.571	ENSRNOG00000005218	Sf3a1	99	82.846	Rattus_norvegicus
ENSXMAG00000002753	sf3a1	99	83.269	ENSRBIG00000032167	SF3A1	100	83.019	Rhinopithecus_bieti
ENSXMAG00000002753	sf3a1	99	83.269	ENSRROG00000044908	SF3A1	100	83.019	Rhinopithecus_roxellana
ENSXMAG00000002753	sf3a1	93	84.626	ENSSBOG00000021960	SF3A1	98	85.030	Saimiri_boliviensis_boliviensis
ENSXMAG00000002753	sf3a1	97	80.392	ENSSHAG00000003666	SF3A1	97	81.961	Sarcophilus_harrisii
ENSXMAG00000002753	sf3a1	100	88.875	ENSSFOG00015004579	sf3a1	100	90.013	Scleropages_formosus
ENSXMAG00000002753	sf3a1	100	90.446	ENSSMAG00000004275	sf3a1	100	90.191	Scophthalmus_maximus
ENSXMAG00000002753	sf3a1	100	93.266	ENSSDUG00000022219	sf3a1	100	93.011	Seriola_dumerili
ENSXMAG00000002753	sf3a1	100	93.266	ENSSLDG00000012642	sf3a1	100	93.011	Seriola_lalandi_dorsalis
ENSXMAG00000002753	sf3a1	97	81.569	ENSSARG00000005960	SF3A1	99	82.092	Sorex_araneus
ENSXMAG00000002753	sf3a1	96	82.445	ENSSPUG00000018863	SF3A1	100	82.463	Sphenodon_punctatus
ENSXMAG00000002753	sf3a1	100	94.028	ENSSPAG00000011856	sf3a1	100	93.647	Stegastes_partitus
ENSXMAG00000002753	sf3a1	97	84.444	ENSSSCG00000010002	SF3A1	100	83.019	Sus_scrofa
ENSXMAG00000002753	sf3a1	96	83.399	ENSTGUG00000010547	SF3A1	99	84.286	Taeniopygia_guttata
ENSXMAG00000002753	sf3a1	100	89.172	ENSTRUG00000006118	sf3a1	100	89.172	Takifugu_rubripes
ENSXMAG00000002753	sf3a1	64	86.245	ENSTNIG00000005713	sf3a1	89	87.611	Tetraodon_nigroviridis
ENSXMAG00000002753	sf3a1	99	76.765	ENSTBEG00000012771	SF3A1	100	76.604	Tupaia_belangeri
ENSXMAG00000002753	sf3a1	97	84.204	ENSTTRG00000001535	SF3A1	100	82.915	Tursiops_truncatus
ENSXMAG00000002753	sf3a1	99	81.496	ENSUAMG00000006750	SF3A1	98	82.330	Ursus_americanus
ENSXMAG00000002753	sf3a1	100	82.456	ENSUMAG00000016665	SF3A1	100	82.581	Ursus_maritimus
ENSXMAG00000002753	sf3a1	97	84.706	ENSVVUG00000003075	SF3A1	100	83.019	Vulpes_vulpes
ENSXMAG00000002753	sf3a1	100	77.136	ENSXETG00000016144	sf3a1	96	83.871	Xenopus_tropicalis
ENSXMAG00000002753	sf3a1	100	99.745	ENSXCOG00000015653	sf3a1	100	99.745	Xiphophorus_couchianus