EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002945 (Gene tree)
Gene ID: 102237593
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 27322 bases
Position: chr13:23282407-23309728
Accession: 102237593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	1	8
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	2	8
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	3	8
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	4	8
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	5	8
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	6	8
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	7	8
ENSXMAP00000029490	PUF	PF00806.19	3.8e-70	8	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	1	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	2	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	3	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	4	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	5	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	6	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	7	8
ENSXMAP00000002968	PUF	PF00806.19	8.6e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000002973	-	3640	XM_005797317	ENSXMAP00000002968	1163 (aa)	XP_005797374	M3ZL76
ENSXMAT00000025837	-	3192	-	ENSXMAP00000029490	1063 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000002945's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002945's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002945	pum1	94	90.361	ENSG00000134644	PUM1	98	90.843	Homo_sapiens
ENSXMAG00000002945	pum1	100	98.095	ENSAPOG00000021632	pum1	100	98.072	Acanthochromis_polyacanthus
ENSXMAG00000002945	pum1	100	77.870	ENSAMEG00000017656	PUM1	97	73.636	Ailuropoda_melanoleuca
ENSXMAG00000002945	pum1	100	97.884	ENSACIG00000021013	pum1	100	97.248	Amphilophus_citrinellus
ENSXMAG00000002945	pum1	100	98.095	ENSAOCG00000003944	pum1	100	98.022	Amphiprion_ocellaris
ENSXMAG00000002945	pum1	100	98.095	ENSAPEG00000014550	pum1	100	98.022	Amphiprion_percula
ENSXMAG00000002945	pum1	100	97.420	ENSATEG00000016004	pum1	100	97.420	Anabas_testudineus
ENSXMAG00000002945	pum1	100	78.778	ENSAPLG00000009351	PUM1	100	74.276	Anas_platyrhynchos
ENSXMAG00000002945	pum1	100	77.778	ENSACAG00000000682	PUM1	98	75.248	Anolis_carolinensis
ENSXMAG00000002945	pum1	100	77.743	ENSANAG00000027865	PUM1	100	80.817	Aotus_nancymaae
ENSXMAG00000002945	pum1	92	97.840	ENSACLG00000019354	pum1	100	97.840	Astatotilapia_calliptera
ENSXMAG00000002945	pum1	100	82.563	ENSAMXG00000020607	pum1	56	92.205	Astyanax_mexicanus
ENSXMAG00000002945	pum1	100	78.031	ENSBTAG00000018979	PUM1	100	81.088	Bos_taurus
ENSXMAG00000002945	pum1	100	78.157	ENSCJAG00000006035	PUM1	100	80.941	Callithrix_jacchus
ENSXMAG00000002945	pum1	100	76.532	ENSCAFG00000011205	PUM1	60	88.403	Canis_familiaris
ENSXMAG00000002945	pum1	97	78.148	ENSCAFG00020024616	PUM1	95	81.064	Canis_lupus_dingo
ENSXMAG00000002945	pum1	100	78.031	ENSCHIG00000012952	PUM1	100	75.783	Capra_hircus
ENSXMAG00000002945	pum1	100	77.743	ENSTSYG00000008868	PUM1	100	81.928	Carlito_syrichta
ENSXMAG00000002945	pum1	100	77.743	ENSCPOG00000031613	PUM1	100	80.693	Cavia_porcellus
ENSXMAG00000002945	pum1	94	90.843	ENSCATG00000017991	PUM1	93	91.325	Cercocebus_atys
ENSXMAG00000002945	pum1	100	77.743	ENSCLAG00000007662	PUM1	100	80.693	Chinchilla_lanigera
ENSXMAG00000002945	pum1	100	76.663	ENSCSAG00000001028	PUM1	100	72.705	Chlorocebus_sabaeus
ENSXMAG00000002945	pum1	93	65.260	ENSCHOG00000010245	PUM1	93	65.459	Choloepus_hoffmanni
ENSXMAG00000002945	pum1	100	78.135	ENSCPBG00000009288	PUM1	100	81.436	Chrysemys_picta_bellii
ENSXMAG00000002945	pum1	94	90.361	ENSCANG00000042606	PUM1	100	90.843	Colobus_angolensis_palliatus
ENSXMAG00000002945	pum1	100	76.867	ENSCGRG00001024949	Pum1	100	80.569	Cricetulus_griseus_chok1gshd
ENSXMAG00000002945	pum1	100	76.867	ENSCGRG00000014197	Pum1	100	80.569	Cricetulus_griseus_crigri
ENSXMAG00000002945	pum1	92	95.689	ENSCSEG00000015981	pum1	100	95.689	Cynoglossus_semilaevis
ENSXMAG00000002945	pum1	100	98.201	ENSCVAG00000007043	pum1	100	98.022	Cyprinodon_variegatus
ENSXMAG00000002945	pum1	100	83.507	ENSDARG00000099256	pum1	100	80.254	Danio_rerio
ENSXMAG00000002945	pum1	100	78.364	ENSDNOG00000010939	PUM1	100	74.111	Dasypus_novemcinctus
ENSXMAG00000002945	pum1	92	72.334	ENSETEG00000004355	PUM1	87	70.549	Echinops_telfairi
ENSXMAG00000002945	pum1	100	78.031	ENSEASG00005010813	PUM1	100	73.675	Equus_asinus_asinus
ENSXMAG00000002945	pum1	100	77.950	ENSECAG00000021369	PUM1	100	73.532	Equus_caballus
ENSXMAG00000002945	pum1	76	90.000	ENSEEUG00000003871	PUM1	74	90.444	Erinaceus_europaeus
ENSXMAG00000002945	pum1	100	88.365	ENSELUG00000002409	pum1	100	89.831	Esox_lucius
ENSXMAG00000002945	pum1	100	78.054	ENSFCAG00000010374	PUM1	100	81.064	Felis_catus
ENSXMAG00000002945	pum1	100	78.270	ENSFALG00000001214	PUM1	97	74.135	Ficedula_albicollis
ENSXMAG00000002945	pum1	100	77.640	ENSFDAG00000011319	PUM1	100	80.569	Fukomys_damarensis
ENSXMAG00000002945	pum1	63	97.353	ENSGMOG00000010491	pum1	57	97.353	Gadus_morhua
ENSXMAG00000002945	pum1	96	89.940	ENSGALG00000042598	PUM1	99	89.940	Gallus_gallus
ENSXMAG00000002945	pum1	100	99.153	ENSGAFG00000015617	pum1	100	99.054	Gambusia_affinis
ENSXMAG00000002945	pum1	99	96.296	ENSGACG00000005717	pum1	100	95.776	Gasterosteus_aculeatus
ENSXMAG00000002945	pum1	96	90.141	ENSGAGG00000001290	PUM1	99	90.141	Gopherus_agassizii
ENSXMAG00000002945	pum1	94	90.361	ENSGGOG00000011983	PUM1	100	90.843	Gorilla_gorilla
ENSXMAG00000002945	pum1	100	98.095	ENSHBUG00000018718	pum1	100	98.022	Haplochromis_burtoni
ENSXMAG00000002945	pum1	100	77.640	ENSHGLG00000013819	Pum1	100	80.569	Heterocephalus_glaber_female
ENSXMAG00000002945	pum1	100	77.640	ENSHGLG00100008621	Pum1	100	80.569	Heterocephalus_glaber_male
ENSXMAG00000002945	pum1	92	90.619	ENSHCOG00000005149	pum1	100	89.306	Hippocampus_comes
ENSXMAG00000002945	pum1	100	81.230	ENSIPUG00000020421	pum1	100	80.202	Ictalurus_punctatus
ENSXMAG00000002945	pum1	100	78.031	ENSSTOG00000010757	PUM1	100	80.941	Ictidomys_tridecemlineatus
ENSXMAG00000002945	pum1	100	77.824	ENSJJAG00000000530	Pum1	100	80.817	Jaculus_jaculus
ENSXMAG00000002945	pum1	100	97.778	ENSKMAG00000003481	pum1	100	97.506	Kryptolebias_marmoratus
ENSXMAG00000002945	pum1	100	96.561	ENSLBEG00000002527	pum1	100	96.561	Labrus_bergylta
ENSXMAG00000002945	pum1	100	76.556	ENSLACG00000017188	PUM1	99	71.937	Latimeria_chalumnae
ENSXMAG00000002945	pum1	100	83.386	ENSLOCG00000005210	pum1	99	80.250	Lepisosteus_oculatus
ENSXMAG00000002945	pum1	100	78.054	ENSLAFG00000003178	PUM1	100	74.007	Loxodonta_africana
ENSXMAG00000002945	pum1	94	90.843	ENSMFAG00000010291	PUM1	100	91.325	Macaca_fascicularis
ENSXMAG00000002945	pum1	94	90.361	ENSMMUG00000013520	PUM1	100	90.843	Macaca_mulatta
ENSXMAG00000002945	pum1	94	90.361	ENSMNEG00000034639	PUM1	100	90.843	Macaca_nemestrina
ENSXMAG00000002945	pum1	94	90.361	ENSMLEG00000038743	PUM1	100	90.843	Mandrillus_leucophaeus
ENSXMAG00000002945	pum1	100	97.460	ENSMAMG00000011606	pum1	100	97.334	Mastacembelus_armatus
ENSXMAG00000002945	pum1	100	98.095	ENSMZEG00005005834	pum1	100	98.022	Maylandia_zebra
ENSXMAG00000002945	pum1	100	78.964	ENSMGAG00000000724	PUM1	100	76.722	Meleagris_gallopavo
ENSXMAG00000002945	pum1	100	77.801	ENSMAUG00000022090	Pum1	100	80.917	Mesocricetus_auratus
ENSXMAG00000002945	pum1	100	77.847	ENSMICG00000007713	-	100	80.817	Microcebus_murinus
ENSXMAG00000002945	pum1	94	89.423	ENSMICG00000012213	-	100	87.952	Microcebus_murinus
ENSXMAG00000002945	pum1	100	76.995	ENSMOCG00000015463	Pum1	100	80.693	Microtus_ochrogaster
ENSXMAG00000002945	pum1	92	97.349	ENSMMOG00000019817	pum1	100	71.204	Mola_mola
ENSXMAG00000002945	pum1	100	77.743	ENSMODG00000017067	PUM1	100	73.859	Monodelphis_domestica
ENSXMAG00000002945	pum1	100	76.788	MGP_CAROLIEiJ_G0026549	Pum1	100	80.569	Mus_caroli
ENSXMAG00000002945	pum1	100	76.684	ENSMUSG00000028580	Pum1	100	80.446	Mus_musculus
ENSXMAG00000002945	pum1	100	76.684	MGP_PahariEiJ_G0028881	Pum1	100	80.446	Mus_pahari
ENSXMAG00000002945	pum1	100	77.306	MGP_SPRETEiJ_G0027529	Pum1	100	80.446	Mus_spretus
ENSXMAG00000002945	pum1	100	78.135	ENSMPUG00000015454	PUM1	100	73.675	Mustela_putorius_furo
ENSXMAG00000002945	pum1	100	78.054	ENSMLUG00000006490	PUM1	100	73.615	Myotis_lucifugus
ENSXMAG00000002945	pum1	100	77.927	ENSNGAG00000002378	Pum1	100	80.941	Nannospalax_galili
ENSXMAG00000002945	pum1	86	98.125	ENSNBRG00000010689	pum1	100	98.125	Neolamprologus_brichardi
ENSXMAG00000002945	pum1	94	87.229	ENSNLEG00000001151	PUM1	100	87.711	Nomascus_leucogenys
ENSXMAG00000002945	pum1	73	78.276	ENSMEUG00000000976	-	67	80.228	Notamacropus_eugenii
ENSXMAG00000002945	pum1	81	91.589	ENSOPRG00000001776	PUM1	75	91.589	Ochotona_princeps
ENSXMAG00000002945	pum1	100	77.824	ENSODEG00000003465	PUM1	100	80.693	Octodon_degus
ENSXMAG00000002945	pum1	100	98.095	ENSONIG00000002290	pum1	100	98.022	Oreochromis_niloticus
ENSXMAG00000002945	pum1	87	62.325	ENSOANG00000004902	-	100	61.134	Ornithorhynchus_anatinus
ENSXMAG00000002945	pum1	99	77.905	ENSOCUG00000008641	PUM1	99	73.571	Oryctolagus_cuniculus
ENSXMAG00000002945	pum1	100	96.487	ENSORLG00000011482	pum1	100	96.487	Oryzias_latipes
ENSXMAG00000002945	pum1	100	96.487	ENSORLG00020019461	pum1	100	96.487	Oryzias_latipes_hni
ENSXMAG00000002945	pum1	100	96.487	ENSORLG00015011375	pum1	100	96.487	Oryzias_latipes_hsok
ENSXMAG00000002945	pum1	84	97.831	ENSOMEG00000009312	pum1	88	97.831	Oryzias_melastigma
ENSXMAG00000002945	pum1	100	74.587	ENSOGAG00000011063	PUM1	100	71.120	Otolemur_garnettii
ENSXMAG00000002945	pum1	100	77.226	ENSOARG00000001899	PUM1	100	73.118	Ovis_aries
ENSXMAG00000002945	pum1	94	90.361	ENSPPAG00000044003	PUM1	100	90.843	Pan_paniscus
ENSXMAG00000002945	pum1	100	78.135	ENSPPRG00000001370	PUM1	100	81.064	Panthera_pardus
ENSXMAG00000002945	pum1	100	77.927	ENSPTIG00000010798	PUM1	100	81.312	Panthera_tigris_altaica
ENSXMAG00000002945	pum1	94	90.361	ENSPTRG00000000453	PUM1	100	90.843	Pan_troglodytes
ENSXMAG00000002945	pum1	94	90.843	ENSPANG00000016338	PUM1	100	91.325	Papio_anubis
ENSXMAG00000002945	pum1	100	79.713	ENSPKIG00000010578	pum1	100	76.500	Paramormyrops_kingsleyae
ENSXMAG00000002945	pum1	100	78.964	ENSPSIG00000014118	PUM1	100	74.338	Pelodiscus_sinensis
ENSXMAG00000002945	pum1	86	96.610	ENSPMGG00000005836	pum1	100	96.610	Periophthalmus_magnuspinnatus
ENSXMAG00000002945	pum1	100	77.801	ENSPEMG00000010009	Pum1	100	80.917	Peromyscus_maniculatus_bairdii
ENSXMAG00000002945	pum1	94	91.325	ENSPCIG00000014151	PUM1	100	91.084	Phascolarctos_cinereus
ENSXMAG00000002945	pum1	95	98.629	ENSPFOG00000007289	pum1	99	98.473	Poecilia_formosa
ENSXMAG00000002945	pum1	100	98.871	ENSPLAG00000007256	pum1	100	98.871	Poecilia_latipinna
ENSXMAG00000002945	pum1	92	98.506	ENSPMEG00000019543	pum1	99	98.506	Poecilia_mexicana
ENSXMAG00000002945	pum1	100	98.836	ENSPREG00000005195	pum1	100	99.153	Poecilia_reticulata
ENSXMAG00000002945	pum1	100	76.138	ENSPPYG00000001621	PUM1	100	72.321	Pongo_abelii
ENSXMAG00000002945	pum1	83	92.593	ENSPCAG00000001979	PUM1	73	92.593	Procavia_capensis
ENSXMAG00000002945	pum1	100	77.847	ENSPCOG00000004398	PUM1	100	80.817	Propithecus_coquereli
ENSXMAG00000002945	pum1	100	75.726	ENSPVAG00000005207	PUM1	97	71.831	Pteropus_vampyrus
ENSXMAG00000002945	pum1	100	98.201	ENSPNYG00000009518	pum1	100	98.108	Pundamilia_nyererei
ENSXMAG00000002945	pum1	100	82.773	ENSPNAG00000026728	pum1	63	92.395	Pygocentrus_nattereri
ENSXMAG00000002945	pum1	100	76.788	ENSRNOG00000011709	Pum1	100	73.344	Rattus_norvegicus
ENSXMAG00000002945	pum1	94	90.843	ENSRBIG00000042521	PUM1	100	91.325	Rhinopithecus_bieti
ENSXMAG00000002945	pum1	94	90.361	ENSRROG00000020156	PUM1	100	90.843	Rhinopithecus_roxellana
ENSXMAG00000002945	pum1	100	78.135	ENSSBOG00000032037	PUM1	100	80.941	Saimiri_boliviensis_boliviensis
ENSXMAG00000002945	pum1	100	77.743	ENSSHAG00000010918	PUM1	100	73.942	Sarcophilus_harrisii
ENSXMAG00000002945	pum1	100	96.508	ENSSMAG00000010918	pum1	100	96.475	Scophthalmus_maximus
ENSXMAG00000002945	pum1	100	97.672	ENSSDUG00000009021	pum1	100	97.592	Seriola_dumerili
ENSXMAG00000002945	pum1	100	97.554	ENSSLDG00000009667	pum1	100	97.672	Seriola_lalandi_dorsalis
ENSXMAG00000002945	pum1	98	79.444	ENSSARG00000003055	PUM1	88	79.045	Sorex_araneus
ENSXMAG00000002945	pum1	100	78.653	ENSSPUG00000006267	PUM1	100	74.172	Sphenodon_punctatus
ENSXMAG00000002945	pum1	100	98.201	ENSSPAG00000016636	pum1	100	98.108	Stegastes_partitus
ENSXMAG00000002945	pum1	100	88.531	ENSSSCG00000003591	PUM1	95	88.934	Sus_scrofa
ENSXMAG00000002945	pum1	100	96.720	ENSTRUG00000013121	pum1	100	97.750	Takifugu_rubripes
ENSXMAG00000002945	pum1	100	96.512	ENSTNIG00000016983	pum1	99	94.957	Tetraodon_nigroviridis
ENSXMAG00000002945	pum1	87	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSXMAG00000002945	pum1	93	78.435	ENSTTRG00000007436	PUM1	88	76.117	Tursiops_truncatus
ENSXMAG00000002945	pum1	98	75.842	ENSUAMG00000018262	-	100	71.649	Ursus_americanus
ENSXMAG00000002945	pum1	53	90.843	ENSUMAG00000009211	PUM1	57	91.325	Ursus_maritimus
ENSXMAG00000002945	pum1	92	83.333	ENSVPAG00000005902	PUM1	92	81.436	Vicugna_pacos
ENSXMAG00000002945	pum1	100	77.950	ENSVVUG00000014631	PUM1	100	75.704	Vulpes_vulpes
ENSXMAG00000002945	pum1	100	73.347	ENSXETG00000012904	pum1	99	70.637	Xenopus_tropicalis