EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000002951 (Gene tree)
Gene ID: 102219037
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 9972 bases
Position: chr2:9874167-9884138
Accession: 102219037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000002969	HRDC	PF00570.23	2.6e-14	1	1
ENSXMAP00000027372	HRDC	PF00570.23	2.6e-14	1	1
ENSXMAP00000002969	ResIII	PF04851.15	6.1e-05	1	1
ENSXMAP00000027372	ResIII	PF04851.15	6.2e-05	1	1
ENSXMAP00000002969	BDHCT	PF08072.11	3e-19	1	1
ENSXMAP00000027372	BDHCT	PF08072.11	3.1e-19	1	1
ENSXMAP00000002969	DEAD	PF00270.29	3.8e-17	1	1
ENSXMAP00000027372	DEAD	PF00270.29	4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000025557	-	4595	XM_005798275	ENSXMAP00000027372	1398 (aa)	XP_005798332	UPI0003B3AFD6
ENSXMAT00000002974	-	4505	XM_023326274	ENSXMAP00000002969	1368 (aa)	XP_023182042	M3ZL77

Gene Model

Click here to download ENSXMAG00000002951's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03440	Homologous recombination	KEGG
xma03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000002951's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000002951	blm	56	64.661	ENSG00000197299	BLM	50	72.746	Homo_sapiens
ENSXMAG00000002951	blm	100	70.877	ENSAPOG00000017966	blm	100	71.298	Acanthochromis_polyacanthus
ENSXMAG00000002951	blm	56	64.322	ENSAMEG00000013843	BLM	55	64.103	Ailuropoda_melanoleuca
ENSXMAG00000002951	blm	100	72.155	ENSACIG00000023762	blm	100	72.003	Amphilophus_citrinellus
ENSXMAG00000002951	blm	100	70.824	ENSAOCG00000003318	blm	100	71.111	Amphiprion_ocellaris
ENSXMAG00000002951	blm	100	70.526	ENSAPEG00000018105	blm	100	71.298	Amphiprion_percula
ENSXMAG00000002951	blm	99	69.602	ENSATEG00000006421	blm	100	69.881	Anabas_testudineus
ENSXMAG00000002951	blm	80	51.451	ENSAPLG00000006878	BLM	71	60.422	Anas_platyrhynchos
ENSXMAG00000002951	blm	60	65.212	ENSACAG00000014275	BLM	84	64.820	Anolis_carolinensis
ENSXMAG00000002951	blm	56	64.405	ENSANAG00000038415	BLM	50	72.746	Aotus_nancymaae
ENSXMAG00000002951	blm	100	71.559	ENSACLG00000020354	blm	100	71.579	Astatotilapia_calliptera
ENSXMAG00000002951	blm	89	72.066	ENSAMXG00000016970	blm	87	72.288	Astyanax_mexicanus
ENSXMAG00000002951	blm	76	54.024	ENSCJAG00000009803	BLM	50	73.156	Callithrix_jacchus
ENSXMAG00000002951	blm	99	45.130	ENSCAFG00020016111	BLM	92	64.491	Canis_lupus_dingo
ENSXMAG00000002951	blm	56	63.939	ENSCHIG00000010329	BLM	51	77.778	Capra_hircus
ENSXMAG00000002951	blm	75	54.057	ENSTSYG00000012368	BLM	51	71.926	Carlito_syrichta
ENSXMAG00000002951	blm	62	70.652	ENSCAPG00000017976	BLM	75	70.652	Cavia_aperea
ENSXMAG00000002951	blm	83	49.106	ENSCPOG00000001761	BLM	59	61.078	Cavia_porcellus
ENSXMAG00000002951	blm	76	52.811	ENSCCAG00000023069	BLM	51	72.951	Cebus_capucinus
ENSXMAG00000002951	blm	56	64.789	ENSCATG00000040609	BLM	75	75.082	Cercocebus_atys
ENSXMAG00000002951	blm	99	45.959	ENSCLAG00000012111	BLM	59	61.916	Chinchilla_lanigera
ENSXMAG00000002951	blm	56	64.533	ENSCSAG00000017040	BLM	55	64.789	Chlorocebus_sabaeus
ENSXMAG00000002951	blm	50	58.796	ENSCHOG00000006255	BLM	50	58.796	Choloepus_hoffmanni
ENSXMAG00000002951	blm	82	51.385	ENSCPBG00000025000	BLM	76	63.971	Chrysemys_picta_bellii
ENSXMAG00000002951	blm	56	65.464	ENSCGRG00001024897	Blm	55	65.504	Cricetulus_griseus_chok1gshd
ENSXMAG00000002951	blm	95	66.243	ENSCSEG00000013483	blm	99	65.247	Cynoglossus_semilaevis
ENSXMAG00000002951	blm	76	80.172	ENSCVAG00000017583	blm	97	76.650	Cyprinodon_variegatus
ENSXMAG00000002951	blm	99	57.203	ENSDARG00000077089	blm	100	57.272	Danio_rerio
ENSXMAG00000002951	blm	56	63.346	ENSDNOG00000010159	BLM	54	63.602	Dasypus_novemcinctus
ENSXMAG00000002951	blm	59	61.985	ENSDORG00000011033	Blm	99	54.269	Dipodomys_ordii
ENSXMAG00000002951	blm	50	42.639	FBgn0002906	Blm	54	40.170	Drosophila_melanogaster
ENSXMAG00000002951	blm	82	49.248	ENSEASG00005006727	BLM	59	61.190	Equus_asinus_asinus
ENSXMAG00000002951	blm	60	64.313	ENSECAG00000011405	BLM	59	64.442	Equus_caballus
ENSXMAG00000002951	blm	76	53.078	ENSEEUG00000001434	BLM	56	62.916	Erinaceus_europaeus
ENSXMAG00000002951	blm	99	57.404	ENSELUG00000019098	blm	99	56.911	Esox_lucius
ENSXMAG00000002951	blm	56	64.578	ENSFCAG00000006087	BLM	50	72.188	Felis_catus
ENSXMAG00000002951	blm	75	54.186	ENSFALG00000010981	BLM	65	63.197	Ficedula_albicollis
ENSXMAG00000002951	blm	94	58.845	ENSFDAG00000012658	BLM	55	65.421	Fukomys_damarensis
ENSXMAG00000002951	blm	100	79.760	ENSFHEG00000002553	blm	100	79.760	Fundulus_heteroclitus
ENSXMAG00000002951	blm	99	59.486	ENSGMOG00000016431	blm	98	69.814	Gadus_morhua
ENSXMAG00000002951	blm	83	50.915	ENSGALG00000008256	BLM	71	63.022	Gallus_gallus
ENSXMAG00000002951	blm	100	94.883	ENSGAFG00000001117	blm	100	94.883	Gambusia_affinis
ENSXMAG00000002951	blm	99	66.295	ENSGACG00000010863	blm	100	87.500	Gasterosteus_aculeatus
ENSXMAG00000002951	blm	65	55.748	ENSGAGG00000005383	BLM	66	71.126	Gopherus_agassizii
ENSXMAG00000002951	blm	56	64.405	ENSGGOG00000007710	BLM	75	74.426	Gorilla_gorilla
ENSXMAG00000002951	blm	100	71.644	ENSHBUG00000015943	blm	100	71.828	Haplochromis_burtoni
ENSXMAG00000002951	blm	76	52.865	ENSHGLG00000013231	BLM	62	63.567	Heterocephalus_glaber_female
ENSXMAG00000002951	blm	75	67.502	ENSHCOG00000011455	blm	100	67.085	Hippocampus_comes
ENSXMAG00000002951	blm	75	62.755	ENSIPUG00000000529	blm	73	70.560	Ictalurus_punctatus
ENSXMAG00000002951	blm	56	64.834	ENSSTOG00000005000	BLM	55	65.128	Ictidomys_tridecemlineatus
ENSXMAG00000002951	blm	56	57.417	ENSJJAG00000016322	Blm	73	57.417	Jaculus_jaculus
ENSXMAG00000002951	blm	100	76.081	ENSKMAG00000016608	blm	100	75.288	Kryptolebias_marmoratus
ENSXMAG00000002951	blm	60	77.551	ENSLBEG00000018729	blm	96	77.455	Labrus_bergylta
ENSXMAG00000002951	blm	57	68.608	ENSLACG00000006490	BLM	54	68.188	Latimeria_chalumnae
ENSXMAG00000002951	blm	99	51.565	ENSLOCG00000014302	blm	60	69.639	Lepisosteus_oculatus
ENSXMAG00000002951	blm	56	64.789	ENSMFAG00000042982	BLM	75	74.754	Macaca_fascicularis
ENSXMAG00000002951	blm	56	64.789	ENSMMUG00000019526	BLM	75	74.754	Macaca_mulatta
ENSXMAG00000002951	blm	56	64.533	ENSMNEG00000031251	BLM	75	74.426	Macaca_nemestrina
ENSXMAG00000002951	blm	56	61.154	ENSMLEG00000032934	BLM	54	61.282	Mandrillus_leucophaeus
ENSXMAG00000002951	blm	99	70.520	ENSMAMG00000008726	blm	99	70.571	Mastacembelus_armatus
ENSXMAG00000002951	blm	100	70.435	ENSMZEG00005022323	blm	100	70.477	Maylandia_zebra
ENSXMAG00000002951	blm	56	64.578	ENSMAUG00000008953	Blm	55	65.000	Mesocricetus_auratus
ENSXMAG00000002951	blm	56	64.758	ENSMICG00000034442	BLM	50	72.541	Microcebus_murinus
ENSXMAG00000002951	blm	56	65.854	ENSMOCG00000016367	Blm	55	65.513	Microtus_ochrogaster
ENSXMAG00000002951	blm	100	68.055	ENSMMOG00000006959	blm	100	67.983	Mola_mola
ENSXMAG00000002951	blm	99	44.959	ENSMODG00000019449	BLM	54	64.676	Monodelphis_domestica
ENSXMAG00000002951	blm	100	71.103	ENSMALG00000007323	blm	100	70.605	Monopterus_albus
ENSXMAG00000002951	blm	56	65.032	MGP_CAROLIEiJ_G0029907	Blm	55	64.645	Mus_caroli
ENSXMAG00000002951	blm	56	65.206	ENSMUSG00000030528	Blm	54	64.820	Mus_musculus
ENSXMAG00000002951	blm	56	65.335	MGP_PahariEiJ_G0013129	Blm	55	65.077	Mus_pahari
ENSXMAG00000002951	blm	56	65.380	MGP_SPRETEiJ_G0031009	Blm	55	64.994	Mus_spretus
ENSXMAG00000002951	blm	73	53.434	ENSMLUG00000014697	BLM	55	63.787	Myotis_lucifugus
ENSXMAG00000002951	blm	56	64.562	ENSNGAG00000001275	Blm	55	64.433	Nannospalax_galili
ENSXMAG00000002951	blm	100	70.373	ENSNBRG00000019702	blm	100	70.737	Neolamprologus_brichardi
ENSXMAG00000002951	blm	74	50.515	ENSNLEG00000012087	BLM	74	60.737	Nomascus_leucogenys
ENSXMAG00000002951	blm	52	64.763	ENSOPRG00000011667	BLM	51	64.624	Ochotona_princeps
ENSXMAG00000002951	blm	74	50.524	ENSODEG00000015373	BLM	80	56.595	Octodon_degus
ENSXMAG00000002951	blm	100	68.273	ENSONIG00000015193	blm	100	68.729	Oreochromis_niloticus
ENSXMAG00000002951	blm	55	64.258	ENSOANG00000009316	-	100	64.516	Ornithorhynchus_anatinus
ENSXMAG00000002951	blm	85	64.093	ENSOCUG00000013969	BLM	84	63.707	Oryctolagus_cuniculus
ENSXMAG00000002951	blm	100	72.868	ENSORLG00000008110	blm	100	72.798	Oryzias_latipes
ENSXMAG00000002951	blm	100	72.618	ENSORLG00020004812	blm	100	72.548	Oryzias_latipes_hni
ENSXMAG00000002951	blm	100	72.586	ENSORLG00015018640	blm	100	73.679	Oryzias_latipes_hsok
ENSXMAG00000002951	blm	100	71.387	ENSOMEG00000023545	blm	100	71.986	Oryzias_melastigma
ENSXMAG00000002951	blm	56	62.996	ENSOGAG00000005708	BLM	55	62.996	Otolemur_garnettii
ENSXMAG00000002951	blm	56	63.939	ENSOARG00000012875	BLM	55	64.066	Ovis_aries
ENSXMAG00000002951	blm	75	53.501	ENSPPAG00000032173	BLM	50	73.156	Pan_paniscus
ENSXMAG00000002951	blm	56	64.240	ENSPPRG00000002471	BLM	50	72.188	Panthera_pardus
ENSXMAG00000002951	blm	56	63.729	ENSPTIG00000016168	BLM	50	71.951	Panthera_tigris_altaica
ENSXMAG00000002951	blm	56	64.744	ENSPTRG00000007460	BLM	50	73.101	Pan_troglodytes
ENSXMAG00000002951	blm	56	64.661	ENSPANG00000018572	BLM	75	74.754	Papio_anubis
ENSXMAG00000002951	blm	71	68.458	ENSPMGG00000006629	blm	100	69.371	Periophthalmus_magnuspinnatus
ENSXMAG00000002951	blm	99	44.422	ENSPCIG00000006609	BLM	54	64.177	Phascolarctos_cinereus
ENSXMAG00000002951	blm	100	94.161	ENSPFOG00000005059	blm	100	94.161	Poecilia_formosa
ENSXMAG00000002951	blm	100	94.015	ENSPLAG00000017344	blm	100	94.015	Poecilia_latipinna
ENSXMAG00000002951	blm	100	94.015	ENSPMEG00000000321	blm	100	94.015	Poecilia_mexicana
ENSXMAG00000002951	blm	100	92.648	ENSPREG00000007715	blm	100	92.363	Poecilia_reticulata
ENSXMAG00000002951	blm	56	63.636	ENSPPYG00000006784	BLM	55	63.892	Pongo_abelii
ENSXMAG00000002951	blm	60	59.929	ENSPCAG00000008960	BLM	60	59.811	Procavia_capensis
ENSXMAG00000002951	blm	79	46.510	ENSPCOG00000000439	BLM	53	56.489	Propithecus_coquereli
ENSXMAG00000002951	blm	54	75.083	ENSPVAG00000011642	BLM	53	75.083	Pteropus_vampyrus
ENSXMAG00000002951	blm	100	63.930	ENSPNYG00000010956	blm	100	63.840	Pundamilia_nyererei
ENSXMAG00000002951	blm	100	57.084	ENSPNAG00000011714	blm	100	57.222	Pygocentrus_nattereri
ENSXMAG00000002951	blm	56	64.872	ENSRNOG00000011213	Blm	55	64.615	Rattus_norvegicus
ENSXMAG00000002951	blm	75	53.209	ENSRBIG00000029656	BLM	75	74.426	Rhinopithecus_bieti
ENSXMAG00000002951	blm	78	53.023	ENSRROG00000037871	BLM	75	74.426	Rhinopithecus_roxellana
ENSXMAG00000002951	blm	66	54.830	ENSSBOG00000030957	BLM	50	72.336	Saimiri_boliviensis_boliviensis
ENSXMAG00000002951	blm	99	44.422	ENSSHAG00000007988	BLM	61	60.539	Sarcophilus_harrisii
ENSXMAG00000002951	blm	76	61.900	ENSSFOG00015015462	blm	80	61.640	Scleropages_formosus
ENSXMAG00000002951	blm	100	68.911	ENSSMAG00000001120	blm	100	69.269	Scophthalmus_maximus
ENSXMAG00000002951	blm	100	71.154	ENSSDUG00000010955	blm	100	70.655	Seriola_dumerili
ENSXMAG00000002951	blm	100	70.399	ENSSLDG00000000634	blm	100	70.328	Seriola_lalandi_dorsalis
ENSXMAG00000002951	blm	56	59.439	ENSSARG00000006398	BLM	59	59.591	Sorex_araneus
ENSXMAG00000002951	blm	75	53.716	ENSSPUG00000000013	BLM	73	61.567	Sphenodon_punctatus
ENSXMAG00000002951	blm	99	72.516	ENSSPAG00000013999	blm	99	72.105	Stegastes_partitus
ENSXMAG00000002951	blm	58	64.463	ENSSSCG00000001816	BLM	59	64.601	Sus_scrofa
ENSXMAG00000002951	blm	79	46.022	ENSTGUG00000009959	-	72	55.409	Taeniopygia_guttata
ENSXMAG00000002951	blm	99	65.616	ENSTRUG00000019860	blm	99	65.401	Takifugu_rubripes
ENSXMAG00000002951	blm	99	63.930	ENSTNIG00000019246	blm	99	64.191	Tetraodon_nigroviridis
ENSXMAG00000002951	blm	55	64.653	ENSTTRG00000016386	BLM	55	64.781	Tursiops_truncatus
ENSXMAG00000002951	blm	69	55.959	ENSUMAG00000009105	BLM	93	68.188	Ursus_maritimus
ENSXMAG00000002951	blm	56	61.076	ENSVPAG00000000085	BLM	55	61.076	Vicugna_pacos
ENSXMAG00000002951	blm	82	63.923	ENSVVUG00000006402	BLM	86	63.649	Vulpes_vulpes
ENSXMAG00000002951	blm	100	96.710	ENSXCOG00000020227	blm	100	96.710	Xiphophorus_couchianus