EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000003266 (Gene tree)
Gene ID: 102225780
Gene Symbol: rab5c
Alias: wu:fb98b08|wu:fi16g01
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 8221 bases
Position: chr16:6985734-6993954
Accession: 102225780
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000026591	MMR_HSR1	PF01926.23	8.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000041167	-	963	XM_005796697	ENSXMAP00000026591	220 (aa)	XP_005796754	M4A3D1

Gene Model

Click here to download ENSXMAG00000003266's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma04144	Endocytosis	KEGG
xma04145	Phagosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000003266's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000003266	rab5c	98	91.204	ENSG00000108774	RAB5C	100	95.604	Homo_sapiens
ENSXMAG00000003266	rab5c	100	95.909	ENSAPOG00000016864	rab5c	100	95.909	Acanthochromis_polyacanthus
ENSXMAG00000003266	rab5c	98	91.204	ENSAMEG00000006003	RAB5C	99	89.815	Ailuropoda_melanoleuca
ENSXMAG00000003266	rab5c	100	96.818	ENSACIG00000010896	rab5c	100	96.818	Amphilophus_citrinellus
ENSXMAG00000003266	rab5c	100	95.909	ENSAOCG00000016614	rab5c	100	95.909	Amphiprion_ocellaris
ENSXMAG00000003266	rab5c	98	95.370	ENSAPEG00000017868	-	99	95.814	Amphiprion_percula
ENSXMAG00000003266	rab5c	99	97.235	ENSATEG00000001937	rab5c	99	97.235	Anabas_testudineus
ENSXMAG00000003266	rab5c	93	93.171	ENSANAG00000025390	RAB5C	100	91.220	Aotus_nancymaae
ENSXMAG00000003266	rab5c	100	95.455	ENSACLG00000002706	rab5c	100	95.455	Astatotilapia_calliptera
ENSXMAG00000003266	rab5c	96	89.623	ENSACLG00000008615	-	100	88.288	Astatotilapia_calliptera
ENSXMAG00000003266	rab5c	95	91.827	ENSAMXG00000037267	-	99	91.827	Astyanax_mexicanus
ENSXMAG00000003266	rab5c	100	97.738	ENSAMXG00000043717	rab5c	100	97.738	Astyanax_mexicanus
ENSXMAG00000003266	rab5c	98	91.204	ENSBTAG00000006982	RAB5C	99	89.352	Bos_taurus
ENSXMAG00000003266	rab5c	98	74.312	WBGene00004268	rab-5	99	74.194	Caenorhabditis_elegans
ENSXMAG00000003266	rab5c	98	91.204	ENSCAFG00000015629	RAB5C	99	89.815	Canis_familiaris
ENSXMAG00000003266	rab5c	98	91.204	ENSCAFG00020013537	RAB5C	99	89.815	Canis_lupus_dingo
ENSXMAG00000003266	rab5c	98	91.204	ENSCHIG00000012960	RAB5C	99	89.352	Capra_hircus
ENSXMAG00000003266	rab5c	98	91.667	ENSTSYG00000030531	RAB5C	99	89.815	Carlito_syrichta
ENSXMAG00000003266	rab5c	98	91.204	ENSCCAG00000025940	RAB5C	99	89.352	Cebus_capucinus
ENSXMAG00000003266	rab5c	98	91.204	ENSCATG00000040873	RAB5C	99	89.815	Cercocebus_atys
ENSXMAG00000003266	rab5c	98	91.204	ENSCLAG00000016650	RAB5C	99	89.352	Chinchilla_lanigera
ENSXMAG00000003266	rab5c	81	95.506	ENSCHOG00000009886	RAB5C	100	95.506	Choloepus_hoffmanni
ENSXMAG00000003266	rab5c	100	74.545	ENSCING00000003340	-	100	74.091	Ciona_intestinalis
ENSXMAG00000003266	rab5c	99	75.446	ENSCSAVG00000000613	-	99	83.333	Ciona_savignyi
ENSXMAG00000003266	rab5c	98	91.204	ENSCGRG00001014226	Rab5c	99	89.352	Cricetulus_griseus_chok1gshd
ENSXMAG00000003266	rab5c	98	91.204	ENSCGRG00000007534	Rab5c	99	89.352	Cricetulus_griseus_crigri
ENSXMAG00000003266	rab5c	100	94.545	ENSCSEG00000017024	rab5c	100	94.545	Cynoglossus_semilaevis
ENSXMAG00000003266	rab5c	100	97.727	ENSCVAG00000009550	rab5c	100	97.727	Cyprinodon_variegatus
ENSXMAG00000003266	rab5c	98	91.204	ENSDNOG00000038853	RAB5C	99	88.889	Dasypus_novemcinctus
ENSXMAG00000003266	rab5c	98	91.204	ENSDORG00000006819	Rab5c	99	89.352	Dipodomys_ordii
ENSXMAG00000003266	rab5c	98	71.628	FBgn0014010	Rab5	84	80.000	Drosophila_melanogaster
ENSXMAG00000003266	rab5c	99	77.880	ENSEBUG00000014794	rab5c	88	86.559	Eptatretus_burgeri
ENSXMAG00000003266	rab5c	98	91.204	ENSEASG00005009281	RAB5C	99	89.815	Equus_asinus_asinus
ENSXMAG00000003266	rab5c	98	91.667	ENSECAG00000025054	RAB5C	99	89.815	Equus_caballus
ENSXMAG00000003266	rab5c	98	91.204	ENSEEUG00000002790	RAB5C	99	89.352	Erinaceus_europaeus
ENSXMAG00000003266	rab5c	98	94.444	ENSELUG00000018516	rab5c	99	94.444	Esox_lucius
ENSXMAG00000003266	rab5c	100	90.455	ENSELUG00000010439	-	100	90.455	Esox_lucius
ENSXMAG00000003266	rab5c	98	91.204	ENSFCAG00000002148	RAB5C	99	89.352	Felis_catus
ENSXMAG00000003266	rab5c	98	90.741	ENSFDAG00000021541	RAB5C	99	88.889	Fukomys_damarensis
ENSXMAG00000003266	rab5c	100	99.091	ENSFHEG00000012117	rab5c	100	99.091	Fundulus_heteroclitus
ENSXMAG00000003266	rab5c	99	90.411	ENSFHEG00000015268	-	99	90.411	Fundulus_heteroclitus
ENSXMAG00000003266	rab5c	76	88.095	ENSGMOG00000001876	-	97	88.095	Gadus_morhua
ENSXMAG00000003266	rab5c	100	95.000	ENSGMOG00000015096	rab5c	100	95.000	Gadus_morhua
ENSXMAG00000003266	rab5c	95	90.909	ENSGAFG00000003642	-	99	88.739	Gambusia_affinis
ENSXMAG00000003266	rab5c	100	100.000	ENSGAFG00000000884	rab5c	100	100.000	Gambusia_affinis
ENSXMAG00000003266	rab5c	100	92.727	ENSGACG00000008659	rab5c	100	92.727	Gasterosteus_aculeatus
ENSXMAG00000003266	rab5c	98	91.204	ENSGGOG00000005472	RAB5C	99	89.815	Gorilla_gorilla
ENSXMAG00000003266	rab5c	96	89.623	ENSHBUG00000006823	-	100	88.288	Haplochromis_burtoni
ENSXMAG00000003266	rab5c	100	95.455	ENSHBUG00000002014	rab5c	100	95.455	Haplochromis_burtoni
ENSXMAG00000003266	rab5c	98	90.278	ENSHGLG00000012067	RAB5C	99	87.963	Heterocephalus_glaber_female
ENSXMAG00000003266	rab5c	95	82.381	ENSHCOG00000020238	-	100	80.263	Hippocampus_comes
ENSXMAG00000003266	rab5c	99	96.804	ENSHCOG00000004662	rab5c	98	96.804	Hippocampus_comes
ENSXMAG00000003266	rab5c	95	94.258	ENSIPUG00000020082	rab5c	100	94.595	Ictalurus_punctatus
ENSXMAG00000003266	rab5c	98	90.741	ENSSTOG00000006620	RAB5C	99	89.352	Ictidomys_tridecemlineatus
ENSXMAG00000003266	rab5c	98	91.667	ENSJJAG00000021181	Rab5c	99	89.352	Jaculus_jaculus
ENSXMAG00000003266	rab5c	100	97.727	ENSKMAG00000020038	rab5c	100	97.727	Kryptolebias_marmoratus
ENSXMAG00000003266	rab5c	99	90.411	ENSKMAG00000017417	-	99	90.411	Kryptolebias_marmoratus
ENSXMAG00000003266	rab5c	100	97.273	ENSLBEG00000004128	rab5c	100	97.273	Labrus_bergylta
ENSXMAG00000003266	rab5c	100	90.045	ENSLBEG00000010408	-	100	90.045	Labrus_bergylta
ENSXMAG00000003266	rab5c	98	92.593	ENSLOCG00000012566	rab5c	100	91.204	Lepisosteus_oculatus
ENSXMAG00000003266	rab5c	98	91.204	ENSMFAG00000039627	RAB5C	99	89.815	Macaca_fascicularis
ENSXMAG00000003266	rab5c	98	91.204	ENSMNEG00000000355	RAB5C	99	89.815	Macaca_nemestrina
ENSXMAG00000003266	rab5c	100	96.818	ENSMAMG00000022322	rab5c	100	96.818	Mastacembelus_armatus
ENSXMAG00000003266	rab5c	99	90.868	ENSMAMG00000016207	-	99	90.868	Mastacembelus_armatus
ENSXMAG00000003266	rab5c	100	95.455	ENSMZEG00005022735	rab5c	100	95.455	Maylandia_zebra
ENSXMAG00000003266	rab5c	96	89.623	ENSMZEG00005021090	-	100	88.288	Maylandia_zebra
ENSXMAG00000003266	rab5c	98	91.667	ENSMAUG00000015005	Rab5c	99	89.815	Mesocricetus_auratus
ENSXMAG00000003266	rab5c	98	91.204	ENSMICG00000041608	RAB5C	99	89.352	Microcebus_murinus
ENSXMAG00000003266	rab5c	98	91.667	ENSMOCG00000018531	-	99	89.352	Microtus_ochrogaster
ENSXMAG00000003266	rab5c	100	96.364	ENSMMOG00000020621	rab5c	100	96.364	Mola_mola
ENSXMAG00000003266	rab5c	98	89.767	ENSMALG00000006052	rab5c	97	89.954	Monopterus_albus
ENSXMAG00000003266	rab5c	99	89.041	ENSMALG00000022348	-	99	89.041	Monopterus_albus
ENSXMAG00000003266	rab5c	98	91.667	MGP_CAROLIEiJ_G0017184	Rab5c	99	89.815	Mus_caroli
ENSXMAG00000003266	rab5c	98	91.667	ENSMUSG00000019173	Rab5c	99	89.815	Mus_musculus
ENSXMAG00000003266	rab5c	98	91.667	MGP_PahariEiJ_G0018314	Rab5c	99	89.815	Mus_pahari
ENSXMAG00000003266	rab5c	98	91.667	MGP_SPRETEiJ_G0018027	Rab5c	99	89.815	Mus_spretus
ENSXMAG00000003266	rab5c	98	91.204	ENSMPUG00000010554	RAB5C	99	89.815	Mustela_putorius_furo
ENSXMAG00000003266	rab5c	98	91.204	ENSNGAG00000010286	Rab5c	99	89.352	Nannospalax_galili
ENSXMAG00000003266	rab5c	100	96.364	ENSNBRG00000018165	rab5c	100	96.364	Neolamprologus_brichardi
ENSXMAG00000003266	rab5c	96	89.623	ENSNBRG00000016922	-	100	88.288	Neolamprologus_brichardi
ENSXMAG00000003266	rab5c	81	88.764	ENSOPRG00000008255	RAB5C	100	88.764	Ochotona_princeps
ENSXMAG00000003266	rab5c	98	90.741	ENSODEG00000017920	RAB5C	99	88.889	Octodon_degus
ENSXMAG00000003266	rab5c	100	96.364	ENSONIG00000001113	rab5c	100	96.364	Oreochromis_niloticus
ENSXMAG00000003266	rab5c	99	96.774	ENSORLG00000003882	rab5c	99	96.774	Oryzias_latipes
ENSXMAG00000003266	rab5c	99	96.774	ENSORLG00020008388	rab5c	99	96.774	Oryzias_latipes_hni
ENSXMAG00000003266	rab5c	99	96.774	ENSORLG00015021900	rab5c	99	96.774	Oryzias_latipes_hsok
ENSXMAG00000003266	rab5c	99	96.774	ENSOMEG00000023078	rab5c	99	96.774	Oryzias_melastigma
ENSXMAG00000003266	rab5c	98	91.667	ENSOGAG00000009456	RAB5C	99	89.815	Otolemur_garnettii
ENSXMAG00000003266	rab5c	98	91.204	ENSOARG00000018768	RAB5C	99	89.352	Ovis_aries
ENSXMAG00000003266	rab5c	98	91.204	ENSPPAG00000037206	RAB5C	99	89.815	Pan_paniscus
ENSXMAG00000003266	rab5c	98	91.204	ENSPPRG00000005745	RAB5C	99	89.352	Panthera_pardus
ENSXMAG00000003266	rab5c	98	91.204	ENSPTIG00000008177	RAB5C	99	89.352	Panthera_tigris_altaica
ENSXMAG00000003266	rab5c	98	91.204	ENSPTRG00000009194	RAB5C	99	89.815	Pan_troglodytes
ENSXMAG00000003266	rab5c	98	88.889	ENSPKIG00000001237	-	99	86.574	Paramormyrops_kingsleyae
ENSXMAG00000003266	rab5c	98	87.963	ENSPKIG00000020112	-	99	87.963	Paramormyrops_kingsleyae
ENSXMAG00000003266	rab5c	100	93.182	ENSPMGG00000010792	rab5c	99	94.884	Periophthalmus_magnuspinnatus
ENSXMAG00000003266	rab5c	98	91.667	ENSPEMG00000017971	Rab5c	99	89.352	Peromyscus_maniculatus_bairdii
ENSXMAG00000003266	rab5c	99	75.115	ENSPMAG00000001399	rab5c	99	76.389	Petromyzon_marinus
ENSXMAG00000003266	rab5c	98	78.733	ENSPMAG00000000008	rab5c	88	86.458	Petromyzon_marinus
ENSXMAG00000003266	rab5c	98	76.389	ENSPMAG00000007867	rab5c	89	83.511	Petromyzon_marinus
ENSXMAG00000003266	rab5c	98	91.204	ENSPCIG00000020225	-	99	89.815	Phascolarctos_cinereus
ENSXMAG00000003266	rab5c	100	100.000	ENSPLAG00000004790	rab5c	100	100.000	Poecilia_latipinna
ENSXMAG00000003266	rab5c	99	89.954	ENSPLAG00000016333	-	100	89.954	Poecilia_latipinna
ENSXMAG00000003266	rab5c	100	100.000	ENSPMEG00000011336	rab5c	100	100.000	Poecilia_mexicana
ENSXMAG00000003266	rab5c	96	91.080	ENSPMEG00000012614	-	100	89.686	Poecilia_mexicana
ENSXMAG00000003266	rab5c	100	100.000	ENSPREG00000010146	rab5c	100	100.000	Poecilia_reticulata
ENSXMAG00000003266	rab5c	88	89.691	ENSPREG00000022167	-	89	92.896	Poecilia_reticulata
ENSXMAG00000003266	rab5c	98	91.204	ENSPPYG00000008398	RAB5C	99	89.815	Pongo_abelii
ENSXMAG00000003266	rab5c	98	90.278	ENSPCAG00000016412	RAB5C	99	88.426	Procavia_capensis
ENSXMAG00000003266	rab5c	98	90.741	ENSPCOG00000026327	RAB5C	99	88.889	Propithecus_coquereli
ENSXMAG00000003266	rab5c	98	91.667	ENSPVAG00000003867	RAB5C	99	89.815	Pteropus_vampyrus
ENSXMAG00000003266	rab5c	96	89.623	ENSPNYG00000015851	-	100	88.288	Pundamilia_nyererei
ENSXMAG00000003266	rab5c	100	95.455	ENSPNYG00000010615	rab5c	100	95.455	Pundamilia_nyererei
ENSXMAG00000003266	rab5c	95	89.474	ENSPNAG00000002218	-	98	89.474	Pygocentrus_nattereri
ENSXMAG00000003266	rab5c	100	96.833	ENSPNAG00000028138	rab5c	100	96.833	Pygocentrus_nattereri
ENSXMAG00000003266	rab5c	98	91.667	ENSRNOG00000018568	Rab5c	99	89.815	Rattus_norvegicus
ENSXMAG00000003266	rab5c	98	91.204	ENSRBIG00000031376	RAB5C	99	89.815	Rhinopithecus_bieti
ENSXMAG00000003266	rab5c	98	91.204	ENSRROG00000032895	RAB5C	99	89.815	Rhinopithecus_roxellana
ENSXMAG00000003266	rab5c	98	91.204	ENSSBOG00000032552	-	99	89.352	Saimiri_boliviensis_boliviensis
ENSXMAG00000003266	rab5c	98	91.667	ENSSHAG00000005267	-	99	90.278	Sarcophilus_harrisii
ENSXMAG00000003266	rab5c	100	88.182	ENSSFOG00015009988	-	100	88.182	Scleropages_formosus
ENSXMAG00000003266	rab5c	95	96.651	ENSSMAG00000007323	rab5c	100	95.909	Scophthalmus_maximus
ENSXMAG00000003266	rab5c	100	97.727	ENSSDUG00000023008	rab5c	100	97.727	Seriola_dumerili
ENSXMAG00000003266	rab5c	100	96.818	ENSSLDG00000017771	rab5c	100	96.818	Seriola_lalandi_dorsalis
ENSXMAG00000003266	rab5c	98	92.130	ENSSPUG00000012950	-	99	90.278	Sphenodon_punctatus
ENSXMAG00000003266	rab5c	100	97.727	ENSSPAG00000006436	rab5c	100	97.727	Stegastes_partitus
ENSXMAG00000003266	rab5c	98	91.204	ENSSSCG00000032467	RAB5C	99	89.352	Sus_scrofa
ENSXMAG00000003266	rab5c	100	95.000	ENSTRUG00000015590	rab5c	100	95.000	Takifugu_rubripes
ENSXMAG00000003266	rab5c	96	96.682	ENSTNIG00000011711	rab5c	95	96.682	Tetraodon_nigroviridis
ENSXMAG00000003266	rab5c	98	91.204	ENSTBEG00000007092	RAB5C	99	89.815	Tupaia_belangeri
ENSXMAG00000003266	rab5c	98	90.741	ENSTTRG00000006673	RAB5C	99	88.889	Tursiops_truncatus
ENSXMAG00000003266	rab5c	98	91.204	ENSUAMG00000024343	RAB5C	99	89.815	Ursus_americanus
ENSXMAG00000003266	rab5c	98	91.204	ENSUMAG00000023270	RAB5C	99	89.815	Ursus_maritimus
ENSXMAG00000003266	rab5c	95	91.388	ENSXCOG00000006300	-	99	89.189	Xiphophorus_couchianus
ENSXMAG00000003266	rab5c	100	99.545	ENSXCOG00000016788	rab5c	100	99.545	Xiphophorus_couchianus
ENSXMAG00000003266	rab5c	99	89.498	ENSXMAG00000022179	-	100	89.498	Xiphophorus_maculatus