EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000003459 (Gene tree)
Gene ID: 102223253
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 17859 bases
Position: chr17:5925825-5943683
Accession: 102223253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000003472	RRM_1	PF00076.22	4.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000003477	-	6774	XM_005814845	ENSXMAP00000003472	586 (aa)	XP_005814902	M3ZMM9

Gene Model

Click here to download ENSXMAG00000003459's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000003459's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000003459	cpsf6	64	52.551	ENSG00000149532	CPSF7	100	50.000	Homo_sapiens
ENSXMAG00000003459	cpsf6	60	46.535	ENSANAG00000024635	CPSF7	69	46.073	Aotus_nancymaae
ENSXMAG00000003459	cpsf6	58	83.051	ENSANAG00000019240	CPSF6	70	83.051	Aotus_nancymaae
ENSXMAG00000003459	cpsf6	95	92.072	ENSACLG00000026325	cpsf6	55	92.260	Astatotilapia_calliptera
ENSXMAG00000003459	cpsf6	65	91.071	ENSAMXG00000016745	CPSF6	87	90.361	Astyanax_mexicanus
ENSXMAG00000003459	cpsf6	61	53.061	ENSBTAG00000015263	CPSF7	71	50.811	Bos_taurus
ENSXMAG00000003459	cpsf6	64	52.551	ENSCJAG00000019282	CPSF7	80	55.414	Callithrix_jacchus
ENSXMAG00000003459	cpsf6	61	53.061	ENSCAFG00000016152	CPSF7	71	51.351	Canis_familiaris
ENSXMAG00000003459	cpsf6	70	82.166	ENSCAFG00000000424	CPSF6	72	82.166	Canis_familiaris
ENSXMAG00000003459	cpsf6	61	53.061	ENSCAFG00020012753	CPSF7	71	51.351	Canis_lupus_dingo
ENSXMAG00000003459	cpsf6	61	53.061	ENSCHIG00000014655	CPSF7	71	50.811	Capra_hircus
ENSXMAG00000003459	cpsf6	61	53.061	ENSTSYG00000010138	-	71	51.351	Carlito_syrichta
ENSXMAG00000003459	cpsf6	51	58.904	ENSCAPG00000006384	CPSF7	70	51.351	Cavia_aperea
ENSXMAG00000003459	cpsf6	54	58.904	ENSCPOG00000009980	CPSF7	71	51.351	Cavia_porcellus
ENSXMAG00000003459	cpsf6	61	52.551	ENSCCAG00000032367	CPSF7	71	50.811	Cebus_capucinus
ENSXMAG00000003459	cpsf6	64	52.551	ENSCATG00000042801	CPSF7	73	50.811	Cercocebus_atys
ENSXMAG00000003459	cpsf6	54	58.904	ENSCLAG00000003174	CPSF7	71	50.811	Chinchilla_lanigera
ENSXMAG00000003459	cpsf6	64	52.551	ENSCSAG00000006414	CPSF7	73	50.811	Chlorocebus_sabaeus
ENSXMAG00000003459	cpsf6	61	53.571	ENSCGRG00001020382	Cpsf7	71	53.804	Cricetulus_griseus_chok1gshd
ENSXMAG00000003459	cpsf6	64	53.571	ENSCGRG00000017954	Cpsf7	73	53.804	Cricetulus_griseus_crigri
ENSXMAG00000003459	cpsf6	95	90.631	ENSCSEG00000008967	cpsf6	55	90.402	Cynoglossus_semilaevis
ENSXMAG00000003459	cpsf6	95	96.216	ENSCVAG00000014857	cpsf6	95	96.216	Cyprinodon_variegatus
ENSXMAG00000003459	cpsf6	58	39.153	ENSCVAG00000007392	CPSF7	76	43.448	Cyprinodon_variegatus
ENSXMAG00000003459	cpsf6	61	53.061	ENSDNOG00000018517	CPSF7	80	56.051	Dasypus_novemcinctus
ENSXMAG00000003459	cpsf6	61	50.000	ENSETEG00000003765	CPSF7	70	55.556	Echinops_telfairi
ENSXMAG00000003459	cpsf6	65	81.106	ENSETEG00000002097	CPSF6	63	82.126	Echinops_telfairi
ENSXMAG00000003459	cpsf6	85	60.797	ENSEBUG00000003540	cpsf6	67	77.381	Eptatretus_burgeri
ENSXMAG00000003459	cpsf6	54	59.060	ENSEASG00005008196	CPSF7	71	51.351	Equus_asinus_asinus
ENSXMAG00000003459	cpsf6	61	53.061	ENSFCAG00000013677	CPSF7	82	56.051	Felis_catus
ENSXMAG00000003459	cpsf6	60	51.295	ENSFALG00000011927	CPSF7	76	54.545	Ficedula_albicollis
ENSXMAG00000003459	cpsf6	54	58.904	ENSFDAG00000003919	CPSF7	71	51.351	Fukomys_damarensis
ENSXMAG00000003459	cpsf6	100	93.171	ENSFHEG00000019693	cpsf6	100	93.171	Fundulus_heteroclitus
ENSXMAG00000003459	cpsf6	50	95.000	ENSGMOG00000012951	cpsf6	53	95.000	Gadus_morhua
ENSXMAG00000003459	cpsf6	59	51.955	ENSGALG00000040962	CPSF7	63	56.250	Gallus_gallus
ENSXMAG00000003459	cpsf6	95	92.252	ENSHBUG00000005998	cpsf6	55	92.570	Haplochromis_burtoni
ENSXMAG00000003459	cpsf6	56	58.904	ENSHGLG00000019090	-	73	51.351	Heterocephalus_glaber_female
ENSXMAG00000003459	cpsf6	56	58.904	ENSHGLG00100013933	-	73	51.351	Heterocephalus_glaber_male
ENSXMAG00000003459	cpsf6	95	84.464	ENSHCOG00000014555	cpsf6	95	86.429	Hippocampus_comes
ENSXMAG00000003459	cpsf6	61	53.061	ENSSTOG00000007708	CPSF7	71	51.351	Ictidomys_tridecemlineatus
ENSXMAG00000003459	cpsf6	64	53.061	ENSJJAG00000019390	Cpsf7	73	51.351	Jaculus_jaculus
ENSXMAG00000003459	cpsf6	55	96.262	ENSKMAG00000014794	cpsf6	94	85.766	Kryptolebias_marmoratus
ENSXMAG00000003459	cpsf6	53	40.411	ENSLBEG00000000947	CPSF7	75	38.798	Labrus_bergylta
ENSXMAG00000003459	cpsf6	95	86.323	ENSLBEG00000015762	cpsf6	95	90.231	Labrus_bergylta
ENSXMAG00000003459	cpsf6	58	44.231	ENSLACG00000005542	CPSF7	58	45.638	Latimeria_chalumnae
ENSXMAG00000003459	cpsf6	62	88.442	ENSLOCG00000016190	cpsf6	66	87.615	Lepisosteus_oculatus
ENSXMAG00000003459	cpsf6	61	53.571	ENSLAFG00000032084	CPSF7	71	51.351	Loxodonta_africana
ENSXMAG00000003459	cpsf6	61	52.551	ENSMFAG00000001401	CPSF7	71	50.811	Macaca_fascicularis
ENSXMAG00000003459	cpsf6	64	52.551	ENSMMUG00000015280	CPSF7	73	50.811	Macaca_mulatta
ENSXMAG00000003459	cpsf6	64	52.551	ENSMNEG00000029585	CPSF7	73	50.811	Macaca_nemestrina
ENSXMAG00000003459	cpsf6	61	52.551	ENSMLEG00000031269	CPSF7	69	50.811	Mandrillus_leucophaeus
ENSXMAG00000003459	cpsf6	95	86.847	ENSMAMG00000010385	cpsf6	95	90.811	Mastacembelus_armatus
ENSXMAG00000003459	cpsf6	95	92.252	ENSMZEG00005007975	cpsf6	55	92.570	Maylandia_zebra
ENSXMAG00000003459	cpsf6	96	41.880	ENSMGAG00000004876	CPSF7	62	58.235	Meleagris_gallopavo
ENSXMAG00000003459	cpsf6	61	53.061	ENSMAUG00000013020	Cpsf7	71	51.351	Mesocricetus_auratus
ENSXMAG00000003459	cpsf6	61	53.061	ENSMICG00000013788	CPSF7	71	51.351	Microcebus_murinus
ENSXMAG00000003459	cpsf6	61	53.061	ENSMOCG00000000072	Cpsf7	71	51.351	Microtus_ochrogaster
ENSXMAG00000003459	cpsf6	61	51.471	ENSMODG00000020364	CPSF7	72	51.295	Monodelphis_domestica
ENSXMAG00000003459	cpsf6	70	92.228	ENSMALG00000014908	cpsf6	76	92.727	Monopterus_albus
ENSXMAG00000003459	cpsf6	61	53.061	MGP_CAROLIEiJ_G0022690	Cpsf7	71	51.351	Mus_caroli
ENSXMAG00000003459	cpsf6	61	53.061	ENSMUSG00000034820	Cpsf7	71	51.351	Mus_musculus
ENSXMAG00000003459	cpsf6	61	53.061	MGP_PahariEiJ_G0014184	Cpsf7	71	51.351	Mus_pahari
ENSXMAG00000003459	cpsf6	61	53.061	MGP_SPRETEiJ_G0023604	Cpsf7	71	51.351	Mus_spretus
ENSXMAG00000003459	cpsf6	51	58.389	ENSMPUG00000014163	CPSF7	66	50.270	Mustela_putorius_furo
ENSXMAG00000003459	cpsf6	63	84.783	ENSMLUG00000028728	-	86	79.866	Myotis_lucifugus
ENSXMAG00000003459	cpsf6	64	53.061	ENSMLUG00000013278	CPSF7	73	51.351	Myotis_lucifugus
ENSXMAG00000003459	cpsf6	68	73.370	ENSMLUG00000023960	-	74	70.732	Myotis_lucifugus
ENSXMAG00000003459	cpsf6	61	51.531	ENSNGAG00000005031	Cpsf7	71	51.351	Nannospalax_galili
ENSXMAG00000003459	cpsf6	61	52.551	ENSNLEG00000002529	CPSF7	65	50.811	Nomascus_leucogenys
ENSXMAG00000003459	cpsf6	61	51.759	ENSMEUG00000002261	CPSF7	71	51.892	Notamacropus_eugenii
ENSXMAG00000003459	cpsf6	74	65.563	ENSODEG00000007109	-	66	64.780	Octodon_degus
ENSXMAG00000003459	cpsf6	67	82.990	ENSODEG00000004418	-	81	84.337	Octodon_degus
ENSXMAG00000003459	cpsf6	54	55.034	ENSODEG00000002610	CPSF7	71	51.064	Octodon_degus
ENSXMAG00000003459	cpsf6	95	89.550	ENSONIG00000011702	cpsf6	95	90.270	Oreochromis_niloticus
ENSXMAG00000003459	cpsf6	96	40.901	ENSOCUG00000024726	CPSF7	71	50.811	Oryctolagus_cuniculus
ENSXMAG00000003459	cpsf6	60	34.513	ENSORLG00000006495	CPSF7	55	49.123	Oryzias_latipes
ENSXMAG00000003459	cpsf6	60	34.513	ENSORLG00020012657	CPSF7	55	49.123	Oryzias_latipes_hni
ENSXMAG00000003459	cpsf6	61	53.061	ENSOGAG00000027958	CPSF7	66	51.351	Otolemur_garnettii
ENSXMAG00000003459	cpsf6	61	53.061	ENSOARG00000012937	CPSF7	64	50.811	Ovis_aries
ENSXMAG00000003459	cpsf6	61	52.551	ENSPPAG00000028232	CPSF7	70	50.811	Pan_paniscus
ENSXMAG00000003459	cpsf6	61	53.061	ENSPPRG00000008538	CPSF7	71	51.351	Panthera_pardus
ENSXMAG00000003459	cpsf6	61	53.061	ENSPTIG00000021699	CPSF7	71	51.351	Panthera_tigris_altaica
ENSXMAG00000003459	cpsf6	61	52.551	ENSPTRG00000003742	CPSF7	71	50.811	Pan_troglodytes
ENSXMAG00000003459	cpsf6	61	52.551	ENSPANG00000006037	CPSF7	67	50.811	Papio_anubis
ENSXMAG00000003459	cpsf6	57	46.067	ENSPKIG00000018054	CPSF7	59	55.963	Paramormyrops_kingsleyae
ENSXMAG00000003459	cpsf6	64	53.061	ENSPEMG00000012648	Cpsf7	73	51.351	Peromyscus_maniculatus_bairdii
ENSXMAG00000003459	cpsf6	61	51.471	ENSPCIG00000002551	CPSF7	70	66.387	Phascolarctos_cinereus
ENSXMAG00000003459	cpsf6	50	96.610	ENSPFOG00000006990	cpsf6	99	100.000	Poecilia_formosa
ENSXMAG00000003459	cpsf6	100	99.659	ENSPLAG00000005715	cpsf6	100	99.659	Poecilia_latipinna
ENSXMAG00000003459	cpsf6	100	99.659	ENSPMEG00000001353	cpsf6	100	99.659	Poecilia_mexicana
ENSXMAG00000003459	cpsf6	100	99.829	ENSPREG00000004417	cpsf6	100	99.829	Poecilia_reticulata
ENSXMAG00000003459	cpsf6	61	52.551	ENSPPYG00000003188	CPSF7	71	50.811	Pongo_abelii
ENSXMAG00000003459	cpsf6	61	53.061	ENSPCOG00000011976	CPSF7	71	51.351	Propithecus_coquereli
ENSXMAG00000003459	cpsf6	61	53.061	ENSPVAG00000010675	CPSF7	71	51.351	Pteropus_vampyrus
ENSXMAG00000003459	cpsf6	95	92.252	ENSPNYG00000020315	cpsf6	55	92.570	Pundamilia_nyererei
ENSXMAG00000003459	cpsf6	58	40.291	ENSPNAG00000015073	CPSF7	66	49.640	Pygocentrus_nattereri
ENSXMAG00000003459	cpsf6	64	53.571	ENSRNOG00000020668	Cpsf7	73	51.892	Rattus_norvegicus
ENSXMAG00000003459	cpsf6	64	52.551	ENSRBIG00000031429	CPSF7	82	55.414	Rhinopithecus_bieti
ENSXMAG00000003459	cpsf6	61	52.551	ENSRROG00000045009	CPSF7	71	50.811	Rhinopithecus_roxellana
ENSXMAG00000003459	cpsf6	61	52.551	ENSSBOG00000018431	CPSF7	71	50.811	Saimiri_boliviensis_boliviensis
ENSXMAG00000003459	cpsf6	59	53.266	ENSSHAG00000011964	CPSF7	68	51.892	Sarcophilus_harrisii
ENSXMAG00000003459	cpsf6	67	42.529	ENSSFOG00015010288	cpsf7	67	45.000	Scleropages_formosus
ENSXMAG00000003459	cpsf6	95	87.568	ENSSMAG00000000471	cpsf6	55	91.022	Scophthalmus_maximus
ENSXMAG00000003459	cpsf6	95	88.108	ENSSDUG00000005024	cpsf6	95	92.072	Seriola_dumerili
ENSXMAG00000003459	cpsf6	95	88.108	ENSSLDG00000009042	cpsf6	95	92.072	Seriola_lalandi_dorsalis
ENSXMAG00000003459	cpsf6	65	86.061	ENSSARG00000006743	CPSF6	63	86.061	Sorex_araneus
ENSXMAG00000003459	cpsf6	61	54.872	ENSSPUG00000019344	CPSF7	73	53.889	Sphenodon_punctatus
ENSXMAG00000003459	cpsf6	95	93.153	ENSSPAG00000013906	cpsf6	94	85.045	Stegastes_partitus
ENSXMAG00000003459	cpsf6	61	53.061	ENSSSCG00000013083	CPSF7	80	56.051	Sus_scrofa
ENSXMAG00000003459	cpsf6	59	49.438	ENSTGUG00000006513	CPSF7	71	54.286	Taeniopygia_guttata
ENSXMAG00000003459	cpsf6	58	52.551	ENSTTRG00000011085	CPSF7	70	51.351	Tursiops_truncatus
ENSXMAG00000003459	cpsf6	61	53.061	ENSUAMG00000017809	CPSF7	71	51.351	Ursus_americanus
ENSXMAG00000003459	cpsf6	56	86.061	ENSUMAG00000020779	CPSF6	70	86.061	Ursus_maritimus
ENSXMAG00000003459	cpsf6	64	53.061	ENSUMAG00000011825	CPSF7	73	51.351	Ursus_maritimus
ENSXMAG00000003459	cpsf6	61	53.061	ENSVVUG00000004939	CPSF7	80	56.051	Vulpes_vulpes
ENSXMAG00000003459	cpsf6	97	38.265	ENSXETG00000006715	cpsf7	65	46.893	Xenopus_tropicalis
ENSXMAG00000003459	cpsf6	100	93.686	ENSXCOG00000013423	cpsf6	100	93.686	Xiphophorus_couchianus