EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000003772 (Gene tree)
Gene ID: 102235383
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 4602 bases
Position: chr13:1385582-1390183
Accession: 102235383
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000003789	RRM_1	PF00076.22	3e-39	1	2
ENSXMAP00000003789	RRM_1	PF00076.22	3e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000003794	-	2739	XM_005797396	ENSXMAP00000003789	391 (aa)	XP_005797453	M3ZNJ6

Gene Model

Click here to download ENSXMAG00000003772's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000003772's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000003772	sf3b4	58	97.807	ENSG00000143368	SF3B4	98	96.791	Homo_sapiens
ENSXMAG00000003772	sf3b4	74	96.194	ENSAPOG00000017647	sf3b4	70	96.085	Acanthochromis_polyacanthus
ENSXMAG00000003772	sf3b4	58	97.807	ENSAMEG00000010073	SF3B4	54	97.391	Ailuropoda_melanoleuca
ENSXMAG00000003772	sf3b4	74	95.848	ENSAOCG00000019801	sf3b4	70	95.730	Amphiprion_ocellaris
ENSXMAG00000003772	sf3b4	74	95.848	ENSAPEG00000010365	sf3b4	70	95.730	Amphiprion_percula
ENSXMAG00000003772	sf3b4	62	98.765	ENSATEG00000012844	sf3b4	66	97.368	Anabas_testudineus
ENSXMAG00000003772	sf3b4	55	100.000	ENSACAG00000010019	SF3B4	55	97.826	Anolis_carolinensis
ENSXMAG00000003772	sf3b4	58	97.807	ENSANAG00000031025	SF3B4	54	97.391	Aotus_nancymaae
ENSXMAG00000003772	sf3b4	74	92.042	ENSACLG00000014260	sf3b4	70	92.171	Astatotilapia_calliptera
ENSXMAG00000003772	sf3b4	62	97.119	ENSAMXG00000008282	sf3b4	66	95.817	Astyanax_mexicanus
ENSXMAG00000003772	sf3b4	58	97.807	ENSBTAG00000012495	SF3B4	54	97.391	Bos_taurus
ENSXMAG00000003772	sf3b4	52	96.040	ENSBTAG00000012793	-	50	95.588	Bos_taurus
ENSXMAG00000003772	sf3b4	58	97.807	ENSCAFG00000011617	SF3B4	54	97.391	Canis_familiaris
ENSXMAG00000003772	sf3b4	58	97.807	ENSCAFG00020019775	SF3B4	54	97.391	Canis_lupus_dingo
ENSXMAG00000003772	sf3b4	58	97.807	ENSCHIG00000025663	-	54	97.391	Capra_hircus
ENSXMAG00000003772	sf3b4	74	61.794	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSXMAG00000003772	sf3b4	58	97.807	ENSTSYG00000009295	SF3B4	54	97.391	Carlito_syrichta
ENSXMAG00000003772	sf3b4	58	97.807	ENSCPOG00000008267	SF3B4	54	97.391	Cavia_porcellus
ENSXMAG00000003772	sf3b4	58	97.807	ENSCATG00000033114	SF3B4	54	97.391	Cercocebus_atys
ENSXMAG00000003772	sf3b4	58	97.807	ENSCLAG00000015851	SF3B4	54	97.391	Chinchilla_lanigera
ENSXMAG00000003772	sf3b4	58	97.807	ENSCSAG00000018129	SF3B4	54	97.391	Chlorocebus_sabaeus
ENSXMAG00000003772	sf3b4	55	100.000	ENSCPBG00000008041	SF3B4	55	97.826	Chrysemys_picta_bellii
ENSXMAG00000003772	sf3b4	57	88.393	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSXMAG00000003772	sf3b4	53	91.429	ENSCSAVG00000007809	-	88	89.697	Ciona_savignyi
ENSXMAG00000003772	sf3b4	58	97.807	ENSCANG00000035579	SF3B4	54	97.391	Colobus_angolensis_palliatus
ENSXMAG00000003772	sf3b4	58	97.807	ENSCGRG00001003590	Sf3b4	54	97.391	Cricetulus_griseus_chok1gshd
ENSXMAG00000003772	sf3b4	58	97.807	ENSCGRG00000016914	Sf3b4	54	97.391	Cricetulus_griseus_crigri
ENSXMAG00000003772	sf3b4	76	90.698	ENSCSEG00000015258	sf3b4	56	95.539	Cynoglossus_semilaevis
ENSXMAG00000003772	sf3b4	70	95.255	ENSCVAG00000005536	sf3b4	68	95.113	Cyprinodon_variegatus
ENSXMAG00000003772	sf3b4	62	97.119	ENSDARG00000018574	sf3b4	66	96.212	Danio_rerio
ENSXMAG00000003772	sf3b4	56	92.273	ENSDNOG00000048908	-	53	91.892	Dasypus_novemcinctus
ENSXMAG00000003772	sf3b4	95	66.929	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSXMAG00000003772	sf3b4	58	97.807	ENSDORG00000016366	Sf3b4	54	97.391	Dipodomys_ordii
ENSXMAG00000003772	sf3b4	58	87.719	ENSETEG00000008963	SF3B4	54	87.391	Echinops_telfairi
ENSXMAG00000003772	sf3b4	58	97.807	ENSEASG00005001477	SF3B4	54	97.391	Equus_asinus_asinus
ENSXMAG00000003772	sf3b4	58	97.807	ENSECAG00000024737	SF3B4	54	97.391	Equus_caballus
ENSXMAG00000003772	sf3b4	88	83.714	ENSELUG00000012876	sf3b4	66	96.226	Esox_lucius
ENSXMAG00000003772	sf3b4	58	97.807	ENSFCAG00000010106	SF3B4	54	97.391	Felis_catus
ENSXMAG00000003772	sf3b4	58	97.807	ENSFDAG00000009286	SF3B4	54	97.391	Fukomys_damarensis
ENSXMAG00000003772	sf3b4	55	100.000	ENSGALG00000013352	SF3B4	55	98.690	Gallus_gallus
ENSXMAG00000003772	sf3b4	100	98.731	ENSGAFG00000010181	sf3b4	100	98.731	Gambusia_affinis
ENSXMAG00000003772	sf3b4	58	100.000	ENSGACG00000003819	sf3b4	58	99.565	Gasterosteus_aculeatus
ENSXMAG00000003772	sf3b4	58	97.807	ENSGGOG00000004761	SF3B4	54	97.391	Gorilla_gorilla
ENSXMAG00000003772	sf3b4	79	69.497	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSXMAG00000003772	sf3b4	74	92.042	ENSHBUG00000002028	sf3b4	70	92.171	Haplochromis_burtoni
ENSXMAG00000003772	sf3b4	58	97.807	ENSHGLG00000012360	SF3B4	54	97.391	Heterocephalus_glaber_female
ENSXMAG00000003772	sf3b4	58	97.807	ENSHGLG00100008533	SF3B4	55	97.391	Heterocephalus_glaber_male
ENSXMAG00000003772	sf3b4	58	97.357	ENSHCOG00000003014	sf3b4	57	97.380	Hippocampus_comes
ENSXMAG00000003772	sf3b4	62	97.531	ENSIPUG00000012242	Sf3b4	66	95.833	Ictalurus_punctatus
ENSXMAG00000003772	sf3b4	58	97.807	ENSSTOG00000000684	-	54	97.391	Ictidomys_tridecemlineatus
ENSXMAG00000003772	sf3b4	57	71.111	ENSJJAG00000022500	Sf3b4	55	70.803	Jaculus_jaculus
ENSXMAG00000003772	sf3b4	96	91.293	ENSKMAG00000008154	sf3b4	67	97.727	Kryptolebias_marmoratus
ENSXMAG00000003772	sf3b4	60	98.283	ENSLBEG00000026818	sf3b4	66	93.609	Labrus_bergylta
ENSXMAG00000003772	sf3b4	61	95.000	ENSLACG00000004436	SF3B4	73	92.075	Latimeria_chalumnae
ENSXMAG00000003772	sf3b4	61	97.500	ENSLOCG00000009048	sf3b4	57	97.500	Lepisosteus_oculatus
ENSXMAG00000003772	sf3b4	58	97.807	ENSLAFG00000008531	SF3B4	54	97.391	Loxodonta_africana
ENSXMAG00000003772	sf3b4	90	60.811	ENSMFAG00000039067	-	58	78.802	Macaca_fascicularis
ENSXMAG00000003772	sf3b4	58	97.807	ENSMFAG00000042395	SF3B4	54	97.391	Macaca_fascicularis
ENSXMAG00000003772	sf3b4	58	97.807	ENSMMUG00000007256	SF3B4	54	97.391	Macaca_mulatta
ENSXMAG00000003772	sf3b4	90	61.413	ENSMNEG00000031526	-	58	78.341	Macaca_nemestrina
ENSXMAG00000003772	sf3b4	58	97.807	ENSMNEG00000031839	SF3B4	54	97.391	Macaca_nemestrina
ENSXMAG00000003772	sf3b4	58	97.807	ENSMLEG00000038667	SF3B4	54	97.391	Mandrillus_leucophaeus
ENSXMAG00000003772	sf3b4	62	97.942	ENSMAMG00000014692	sf3b4	66	96.226	Mastacembelus_armatus
ENSXMAG00000003772	sf3b4	74	92.042	ENSMZEG00005026741	sf3b4	70	92.171	Maylandia_zebra
ENSXMAG00000003772	sf3b4	55	100.000	ENSMGAG00000000653	SF3B4	55	98.690	Meleagris_gallopavo
ENSXMAG00000003772	sf3b4	58	97.807	ENSMAUG00000015266	Sf3b4	54	97.391	Mesocricetus_auratus
ENSXMAG00000003772	sf3b4	58	97.807	ENSMICG00000044961	SF3B4	54	97.391	Microcebus_murinus
ENSXMAG00000003772	sf3b4	52	98.049	ENSMOCG00000014155	-	55	95.023	Microtus_ochrogaster
ENSXMAG00000003772	sf3b4	58	97.807	ENSMOCG00000013658	-	54	97.391	Microtus_ochrogaster
ENSXMAG00000003772	sf3b4	58	97.807	ENSMODG00000018767	SF3B4	54	97.391	Monodelphis_domestica
ENSXMAG00000003772	sf3b4	68	95.880	ENSMALG00000006174	sf3b4	66	96.226	Monopterus_albus
ENSXMAG00000003772	sf3b4	58	97.807	MGP_CAROLIEiJ_G0025365	Sf3b4	54	97.391	Mus_caroli
ENSXMAG00000003772	sf3b4	58	97.807	ENSMUSG00000068856	Sf3b4	54	97.391	Mus_musculus
ENSXMAG00000003772	sf3b4	58	97.807	MGP_PahariEiJ_G0026809	Sf3b4	54	97.391	Mus_pahari
ENSXMAG00000003772	sf3b4	58	97.807	MGP_SPRETEiJ_G0026309	Sf3b4	54	97.391	Mus_spretus
ENSXMAG00000003772	sf3b4	58	97.807	ENSMPUG00000005563	SF3B4	54	97.391	Mustela_putorius_furo
ENSXMAG00000003772	sf3b4	58	97.807	ENSMLUG00000010789	SF3B4	54	97.826	Myotis_lucifugus
ENSXMAG00000003772	sf3b4	58	97.807	ENSNGAG00000016337	Sf3b4	54	97.391	Nannospalax_galili
ENSXMAG00000003772	sf3b4	74	92.734	ENSNBRG00000013865	sf3b4	70	92.883	Neolamprologus_brichardi
ENSXMAG00000003772	sf3b4	91	67.925	ENSNLEG00000000537	-	58	88.261	Nomascus_leucogenys
ENSXMAG00000003772	sf3b4	100	49.762	ENSNLEG00000009693	-	98	49.762	Nomascus_leucogenys
ENSXMAG00000003772	sf3b4	58	93.421	ENSOPRG00000010808	SF3B4	54	93.043	Ochotona_princeps
ENSXMAG00000003772	sf3b4	92	57.560	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSXMAG00000003772	sf3b4	77	70.032	ENSODEG00000003597	-	59	80.083	Octodon_degus
ENSXMAG00000003772	sf3b4	68	94.737	ENSONIG00000002730	sf3b4	66	94.737	Oreochromis_niloticus
ENSXMAG00000003772	sf3b4	66	72.556	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSXMAG00000003772	sf3b4	58	97.807	ENSOCUG00000004614	SF3B4	54	97.391	Oryctolagus_cuniculus
ENSXMAG00000003772	sf3b4	76	89.701	ENSORLG00000003062	sf3b4	59	98.690	Oryzias_latipes
ENSXMAG00000003772	sf3b4	76	89.701	ENSORLG00020000687	sf3b4	57	98.690	Oryzias_latipes_hni
ENSXMAG00000003772	sf3b4	76	89.701	ENSORLG00015010989	sf3b4	57	98.690	Oryzias_latipes_hsok
ENSXMAG00000003772	sf3b4	59	98.276	ENSOMEG00000013694	sf3b4	68	93.309	Oryzias_melastigma
ENSXMAG00000003772	sf3b4	58	97.807	ENSOGAG00000006265	SF3B4	54	97.391	Otolemur_garnettii
ENSXMAG00000003772	sf3b4	73	72.727	ENSOARG00000007368	-	55	80.973	Ovis_aries
ENSXMAG00000003772	sf3b4	58	97.807	ENSOARG00000020718	-	54	97.391	Ovis_aries
ENSXMAG00000003772	sf3b4	78	74.121	ENSPPAG00000030024	-	56	86.957	Pan_paniscus
ENSXMAG00000003772	sf3b4	58	97.807	ENSPPAG00000040904	SF3B4	54	97.391	Pan_paniscus
ENSXMAG00000003772	sf3b4	58	97.807	ENSPPRG00000007384	SF3B4	54	97.391	Panthera_pardus
ENSXMAG00000003772	sf3b4	58	97.807	ENSPTIG00000014530	SF3B4	54	97.391	Panthera_tigris_altaica
ENSXMAG00000003772	sf3b4	78	75.000	ENSPTRG00000049727	-	58	87.391	Pan_troglodytes
ENSXMAG00000003772	sf3b4	58	97.807	ENSPTRG00000001243	SF3B4	54	97.391	Pan_troglodytes
ENSXMAG00000003772	sf3b4	58	97.807	ENSPANG00000005126	SF3B4	54	97.391	Papio_anubis
ENSXMAG00000003772	sf3b4	62	98.354	ENSPKIG00000020669	sf3b4	70	96.970	Paramormyrops_kingsleyae
ENSXMAG00000003772	sf3b4	58	97.807	ENSPEMG00000017568	Sf3b4	54	97.391	Peromyscus_maniculatus_bairdii
ENSXMAG00000003772	sf3b4	54	95.305	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSXMAG00000003772	sf3b4	58	97.807	ENSPCIG00000008765	SF3B4	54	97.391	Phascolarctos_cinereus
ENSXMAG00000003772	sf3b4	100	98.223	ENSPFOG00000005754	sf3b4	100	98.223	Poecilia_formosa
ENSXMAG00000003772	sf3b4	87	98.827	ENSPLAG00000001401	sf3b4	94	98.827	Poecilia_latipinna
ENSXMAG00000003772	sf3b4	100	97.716	ENSPMEG00000014452	sf3b4	57	97.716	Poecilia_mexicana
ENSXMAG00000003772	sf3b4	87	94.915	ENSPREG00000011076	sf3b4	88	94.915	Poecilia_reticulata
ENSXMAG00000003772	sf3b4	53	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSXMAG00000003772	sf3b4	58	97.807	ENSPCOG00000015399	SF3B4	54	97.391	Propithecus_coquereli
ENSXMAG00000003772	sf3b4	58	97.807	ENSPVAG00000014171	SF3B4	54	97.391	Pteropus_vampyrus
ENSXMAG00000003772	sf3b4	74	92.042	ENSPNYG00000012700	sf3b4	70	92.171	Pundamilia_nyererei
ENSXMAG00000003772	sf3b4	62	97.942	ENSPNAG00000000686	sf3b4	67	96.591	Pygocentrus_nattereri
ENSXMAG00000003772	sf3b4	58	97.807	ENSRNOG00000021181	Sf3b4	54	97.391	Rattus_norvegicus
ENSXMAG00000003772	sf3b4	58	97.807	ENSRBIG00000043392	SF3B4	54	97.391	Rhinopithecus_bieti
ENSXMAG00000003772	sf3b4	58	97.807	ENSRROG00000029366	SF3B4	54	97.391	Rhinopithecus_roxellana
ENSXMAG00000003772	sf3b4	93	61.333	ENSRROG00000028213	-	56	73.874	Rhinopithecus_roxellana
ENSXMAG00000003772	sf3b4	58	97.368	ENSSBOG00000012310	-	54	96.957	Saimiri_boliviensis_boliviensis
ENSXMAG00000003772	sf3b4	58	92.982	ENSSHAG00000004043	SF3B4	54	92.411	Sarcophilus_harrisii
ENSXMAG00000003772	sf3b4	62	98.354	ENSSFOG00015008864	sf3b4	65	96.970	Scleropages_formosus
ENSXMAG00000003772	sf3b4	76	94.295	ENSSMAG00000006837	sf3b4	67	96.992	Scophthalmus_maximus
ENSXMAG00000003772	sf3b4	68	96.992	ENSSDUG00000012064	sf3b4	66	96.992	Seriola_dumerili
ENSXMAG00000003772	sf3b4	68	96.992	ENSSLDG00000014226	sf3b4	66	96.992	Seriola_lalandi_dorsalis
ENSXMAG00000003772	sf3b4	79	76.282	ENSSPUG00000001028	SF3B4	57	98.253	Sphenodon_punctatus
ENSXMAG00000003772	sf3b4	62	97.942	ENSSPAG00000019219	sf3b4	66	96.617	Stegastes_partitus
ENSXMAG00000003772	sf3b4	58	97.807	ENSSSCG00000006665	-	54	97.391	Sus_scrofa
ENSXMAG00000003772	sf3b4	61	96.203	ENSTGUG00000004470	SF3B4	90	98.253	Taeniopygia_guttata
ENSXMAG00000003772	sf3b4	81	90.566	ENSTRUG00000004516	sf3b4	67	93.609	Takifugu_rubripes
ENSXMAG00000003772	sf3b4	59	98.690	ENSTNIG00000009156	sf3b4	59	98.690	Tetraodon_nigroviridis
ENSXMAG00000003772	sf3b4	58	97.807	ENSTTRG00000005217	SF3B4	54	97.391	Tursiops_truncatus
ENSXMAG00000003772	sf3b4	58	97.807	ENSUAMG00000022468	SF3B4	54	97.391	Ursus_americanus
ENSXMAG00000003772	sf3b4	58	97.807	ENSUMAG00000003802	SF3B4	55	97.391	Ursus_maritimus
ENSXMAG00000003772	sf3b4	55	97.685	ENSVPAG00000008152	SF3B4	53	97.248	Vicugna_pacos
ENSXMAG00000003772	sf3b4	58	97.807	ENSVVUG00000007732	-	59	97.391	Vulpes_vulpes
ENSXMAG00000003772	sf3b4	78	77.961	ENSXETG00000011038	sf3b4	53	100.000	Xenopus_tropicalis
ENSXMAG00000003772	sf3b4	100	99.744	ENSXCOG00000019895	sf3b4	100	99.744	Xiphophorus_couchianus