EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004032 (Gene tree)
Gene ID: 102223657
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 49788 bases
Position: chr23:27520207-27569994
Accession: 102223657
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004037	RNA_pol_Rpb1_5	PF04998.17	7.2e-100	1	1
ENSXMAP00000004037	RNA_pol_Rpb1_4	PF05000.17	2.4e-21	1	1
ENSXMAP00000004037	RNA_pol_Rpb1_2	PF00623.20	3.8e-68	1	1
ENSXMAP00000004037	RNA_pol_Rpb1_3	PF04983.18	6.3e-37	1	1
ENSXMAP00000004037	RNA_pol_Rpb1_1	PF04997.12	1.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004042	-	5037	XM_023328544	ENSXMAP00000004037	1678 (aa)	XP_023184312	M3ZP94

Gene Model

Click here to download ENSXMAG00000004032's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004032's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004032	polr1a	100	65.761	ENSG00000068654	POLR1A	100	65.703	Homo_sapiens
ENSXMAG00000004032	polr1a	69	83.959	ENSAPOG00000017945	polr1a	99	83.959	Acanthochromis_polyacanthus
ENSXMAG00000004032	polr1a	100	64.719	ENSAMEG00000005807	POLR1A	100	68.265	Ailuropoda_melanoleuca
ENSXMAG00000004032	polr1a	100	77.529	ENSACIG00000022147	polr1a	100	77.412	Amphilophus_citrinellus
ENSXMAG00000004032	polr1a	100	82.845	ENSAOCG00000017336	polr1a	100	83.795	Amphiprion_ocellaris
ENSXMAG00000004032	polr1a	100	82.787	ENSAPEG00000016105	polr1a	100	83.138	Amphiprion_percula
ENSXMAG00000004032	polr1a	100	83.373	ENSATEG00000016773	polr1a	100	83.373	Anabas_testudineus
ENSXMAG00000004032	polr1a	85	66.824	ENSAPLG00000013871	POLR1A	99	66.712	Anas_platyrhynchos
ENSXMAG00000004032	polr1a	99	64.327	ENSACAG00000012141	POLR1A	99	64.074	Anolis_carolinensis
ENSXMAG00000004032	polr1a	100	64.405	ENSANAG00000033927	POLR1A	100	65.238	Aotus_nancymaae
ENSXMAG00000004032	polr1a	100	77.685	ENSACLG00000020541	polr1a	100	77.302	Astatotilapia_calliptera
ENSXMAG00000004032	polr1a	100	64.971	ENSBTAG00000006481	POLR1A	100	64.968	Bos_taurus
ENSXMAG00000004032	polr1a	99	39.312	WBGene00012999	rpoa-1	98	39.312	Caenorhabditis_elegans
ENSXMAG00000004032	polr1a	100	64.859	ENSCJAG00000019547	POLR1A	100	65.190	Callithrix_jacchus
ENSXMAG00000004032	polr1a	100	64.760	ENSCAFG00000007613	POLR1A	100	65.139	Canis_familiaris
ENSXMAG00000004032	polr1a	100	65.097	ENSCAFG00020014752	POLR1A	100	65.097	Canis_lupus_dingo
ENSXMAG00000004032	polr1a	100	64.484	ENSCHIG00000018204	POLR1A	100	64.542	Capra_hircus
ENSXMAG00000004032	polr1a	100	64.686	ENSTSYG00000002761	POLR1A	100	64.907	Carlito_syrichta
ENSXMAG00000004032	polr1a	97	62.139	ENSCAPG00000010132	POLR1A	99	62.560	Cavia_aperea
ENSXMAG00000004032	polr1a	100	65.058	ENSCPOG00000012350	POLR1A	100	65.545	Cavia_porcellus
ENSXMAG00000004032	polr1a	100	65.278	ENSCCAG00000019839	POLR1A	100	65.567	Cebus_capucinus
ENSXMAG00000004032	polr1a	100	65.703	ENSCATG00000029786	POLR1A	100	65.761	Cercocebus_atys
ENSXMAG00000004032	polr1a	100	64.583	ENSCLAG00000005187	POLR1A	100	64.389	Chinchilla_lanigera
ENSXMAG00000004032	polr1a	100	65.645	ENSCSAG00000016251	POLR1A	100	65.471	Chlorocebus_sabaeus
ENSXMAG00000004032	polr1a	99	66.201	ENSCPBG00000001115	POLR1A	99	66.027	Chrysemys_picta_bellii
ENSXMAG00000004032	polr1a	99	47.510	ENSCSAVG00000007184	-	99	47.517	Ciona_savignyi
ENSXMAG00000004032	polr1a	100	62.948	ENSCANG00000031785	POLR1A	100	62.890	Colobus_angolensis_palliatus
ENSXMAG00000004032	polr1a	100	59.687	ENSCGRG00001006651	Polr1a	100	61.021	Cricetulus_griseus_chok1gshd
ENSXMAG00000004032	polr1a	60	64.070	ENSCGRG00000010834	Polr1a	100	64.265	Cricetulus_griseus_crigri
ENSXMAG00000004032	polr1a	100	75.088	ENSCSEG00000020190	polr1a	100	75.191	Cynoglossus_semilaevis
ENSXMAG00000004032	polr1a	100	85.757	ENSCVAG00000020941	polr1a	100	86.407	Cyprinodon_variegatus
ENSXMAG00000004032	polr1a	100	72.154	ENSDARG00000098375	polr1a	100	71.712	Danio_rerio
ENSXMAG00000004032	polr1a	100	62.087	ENSDNOG00000010829	POLR1A	100	61.971	Dasypus_novemcinctus
ENSXMAG00000004032	polr1a	100	64.212	ENSDORG00000008298	Polr1a	100	64.829	Dipodomys_ordii
ENSXMAG00000004032	polr1a	78	44.181	FBgn0019938	RpI1	99	42.866	Drosophila_melanogaster
ENSXMAG00000004032	polr1a	72	87.500	ENSETEG00000000412	-	71	87.500	Echinops_telfairi
ENSXMAG00000004032	polr1a	89	48.024	ENSEBUG00000005667	-	99	48.443	Eptatretus_burgeri
ENSXMAG00000004032	polr1a	100	64.669	ENSEASG00005001625	POLR1A	100	65.258	Equus_asinus_asinus
ENSXMAG00000004032	polr1a	100	64.726	ENSECAG00000010092	POLR1A	99	69.430	Equus_caballus
ENSXMAG00000004032	polr1a	100	64.726	ENSECAG00000030510	-	99	69.430	Equus_caballus
ENSXMAG00000004032	polr1a	100	64.726	ENSECAG00000036306	-	99	69.430	Equus_caballus
ENSXMAG00000004032	polr1a	85	76.744	ENSEEUG00000000676	POLR1A	84	76.744	Erinaceus_europaeus
ENSXMAG00000004032	polr1a	100	72.086	ENSELUG00000012769	polr1a	99	72.203	Esox_lucius
ENSXMAG00000004032	polr1a	100	64.529	ENSFCAG00000008966	POLR1A	100	64.876	Felis_catus
ENSXMAG00000004032	polr1a	99	64.185	ENSFALG00000010082	POLR1A	99	64.420	Ficedula_albicollis
ENSXMAG00000004032	polr1a	100	64.672	ENSFDAG00000013726	POLR1A	100	64.477	Fukomys_damarensis
ENSXMAG00000004032	polr1a	100	81.165	ENSFHEG00000005996	polr1a	100	81.519	Fundulus_heteroclitus
ENSXMAG00000004032	polr1a	100	68.650	ENSGMOG00000002230	polr1a	100	68.709	Gadus_morhua
ENSXMAG00000004032	polr1a	89	62.420	ENSGALG00000038160	-	98	63.202	Gallus_gallus
ENSXMAG00000004032	polr1a	100	91.686	ENSGAFG00000015266	polr1a	100	91.509	Gambusia_affinis
ENSXMAG00000004032	polr1a	100	77.181	ENSGACG00000018791	polr1a	100	77.270	Gasterosteus_aculeatus
ENSXMAG00000004032	polr1a	89	67.566	ENSGAGG00000004984	-	99	67.479	Gopherus_agassizii
ENSXMAG00000004032	polr1a	100	65.876	ENSGGOG00000001788	POLR1A	100	65.818	Gorilla_gorilla
ENSXMAG00000004032	polr1a	90	79.085	ENSHBUG00000020021	polr1a	99	79.458	Haplochromis_burtoni
ENSXMAG00000004032	polr1a	100	65.020	ENSHGLG00000006334	POLR1A	100	64.846	Heterocephalus_glaber_female
ENSXMAG00000004032	polr1a	100	64.832	ENSHGLG00100006614	POLR1A	100	64.658	Heterocephalus_glaber_male
ENSXMAG00000004032	polr1a	100	74.456	ENSHCOG00000003345	polr1a	100	74.205	Hippocampus_comes
ENSXMAG00000004032	polr1a	100	70.210	ENSIPUG00000013174	polr1a	100	69.901	Ictalurus_punctatus
ENSXMAG00000004032	polr1a	99	65.344	ENSSTOG00000012580	POLR1A	100	65.288	Ictidomys_tridecemlineatus
ENSXMAG00000004032	polr1a	100	65.391	ENSJJAG00000013113	Polr1a	100	65.177	Jaculus_jaculus
ENSXMAG00000004032	polr1a	100	84.096	ENSKMAG00000007399	polr1a	100	84.038	Kryptolebias_marmoratus
ENSXMAG00000004032	polr1a	94	82.680	ENSLBEG00000015401	polr1a	99	82.575	Labrus_bergylta
ENSXMAG00000004032	polr1a	54	69.815	ENSLACG00000003218	polr1a	100	69.565	Latimeria_chalumnae
ENSXMAG00000004032	polr1a	100	70.332	ENSLOCG00000010881	polr1a	100	70.099	Lepisosteus_oculatus
ENSXMAG00000004032	polr1a	100	64.910	ENSLAFG00000014948	POLR1A	100	64.910	Loxodonta_africana
ENSXMAG00000004032	polr1a	100	65.240	ENSMFAG00000046097	POLR1A	100	65.509	Macaca_fascicularis
ENSXMAG00000004032	polr1a	100	65.182	ENSMMUG00000015815	POLR1A	100	65.451	Macaca_mulatta
ENSXMAG00000004032	polr1a	100	65.182	ENSMNEG00000043313	POLR1A	100	65.451	Macaca_nemestrina
ENSXMAG00000004032	polr1a	100	65.240	ENSMLEG00000042428	POLR1A	100	65.298	Mandrillus_leucophaeus
ENSXMAG00000004032	polr1a	100	81.261	ENSMAMG00000016565	polr1a	100	81.700	Mastacembelus_armatus
ENSXMAG00000004032	polr1a	100	82.540	ENSMZEG00005004915	polr1a	100	82.540	Maylandia_zebra
ENSXMAG00000004032	polr1a	99	62.168	ENSMGAG00000013111	POLR1A	99	62.037	Meleagris_gallopavo
ENSXMAG00000004032	polr1a	91	64.702	ENSMAUG00000008497	Polr1a	99	64.702	Mesocricetus_auratus
ENSXMAG00000004032	polr1a	100	64.679	ENSMICG00000000757	POLR1A	100	65.046	Microcebus_murinus
ENSXMAG00000004032	polr1a	100	65.087	ENSMOCG00000000122	Polr1a	100	65.023	Microtus_ochrogaster
ENSXMAG00000004032	polr1a	100	78.800	ENSMMOG00000010216	polr1a	100	78.707	Mola_mola
ENSXMAG00000004032	polr1a	100	61.560	ENSMODG00000009335	POLR1A	100	61.276	Monodelphis_domestica
ENSXMAG00000004032	polr1a	100	81.022	ENSMALG00000013363	polr1a	100	81.503	Monopterus_albus
ENSXMAG00000004032	polr1a	100	63.610	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.074	Mus_caroli
ENSXMAG00000004032	polr1a	100	63.979	ENSMUSG00000049553	Polr1a	100	64.426	Mus_musculus
ENSXMAG00000004032	polr1a	100	64.402	MGP_PahariEiJ_G0022230	Polr1a	100	64.364	Mus_pahari
ENSXMAG00000004032	polr1a	100	63.134	MGP_SPRETEiJ_G0029499	Polr1a	100	63.476	Mus_spretus
ENSXMAG00000004032	polr1a	100	64.686	ENSMPUG00000009135	POLR1A	100	65.275	Mustela_putorius_furo
ENSXMAG00000004032	polr1a	100	64.629	ENSMLUG00000015723	POLR1A	100	65.418	Myotis_lucifugus
ENSXMAG00000004032	polr1a	100	65.026	ENSNGAG00000017907	Polr1a	100	64.910	Nannospalax_galili
ENSXMAG00000004032	polr1a	100	82.128	ENSNBRG00000000519	polr1a	100	82.343	Neolamprologus_brichardi
ENSXMAG00000004032	polr1a	100	62.986	ENSNLEG00000002264	POLR1A	100	63.573	Nomascus_leucogenys
ENSXMAG00000004032	polr1a	75	82.677	ENSMEUG00000011665	-	75	82.677	Notamacropus_eugenii
ENSXMAG00000004032	polr1a	99	59.075	ENSOPRG00000008269	POLR1A	100	59.799	Ochotona_princeps
ENSXMAG00000004032	polr1a	100	64.925	ENSODEG00000003542	POLR1A	100	64.614	Octodon_degus
ENSXMAG00000004032	polr1a	100	81.557	ENSONIG00000015895	polr1a	100	82.164	Oreochromis_niloticus
ENSXMAG00000004032	polr1a	100	65.445	ENSOCUG00000010138	POLR1A	100	65.407	Oryctolagus_cuniculus
ENSXMAG00000004032	polr1a	100	80.388	ENSORLG00000008753	polr1a	99	80.505	Oryzias_latipes
ENSXMAG00000004032	polr1a	100	76.792	ENSORLG00020020726	polr1a	99	76.733	Oryzias_latipes_hni
ENSXMAG00000004032	polr1a	95	86.170	ENSORLG00015016071	polr1a	98	86.170	Oryzias_latipes_hsok
ENSXMAG00000004032	polr1a	100	64.446	ENSOGAG00000004031	POLR1A	100	64.893	Otolemur_garnettii
ENSXMAG00000004032	polr1a	100	64.380	ENSOARG00000020601	POLR1A	100	64.719	Ovis_aries
ENSXMAG00000004032	polr1a	100	65.645	ENSPPAG00000042450	POLR1A	100	65.587	Pan_paniscus
ENSXMAG00000004032	polr1a	100	64.686	ENSPPRG00000006702	POLR1A	100	65.217	Panthera_pardus
ENSXMAG00000004032	polr1a	100	64.232	ENSPTIG00000018783	POLR1A	100	64.760	Panthera_tigris_altaica
ENSXMAG00000004032	polr1a	100	65.080	ENSPTRG00000012147	POLR1A	100	65.645	Pan_troglodytes
ENSXMAG00000004032	polr1a	100	65.471	ENSPANG00000025908	POLR1A	100	65.529	Papio_anubis
ENSXMAG00000004032	polr1a	100	69.853	ENSPKIG00000005468	polr1a	100	69.947	Paramormyrops_kingsleyae
ENSXMAG00000004032	polr1a	63	65.374	ENSPSIG00000009321	-	99	65.374	Pelodiscus_sinensis
ENSXMAG00000004032	polr1a	55	78.571	ENSPMGG00000009718	polr1a	95	78.571	Periophthalmus_magnuspinnatus
ENSXMAG00000004032	polr1a	100	64.849	ENSPEMG00000022224	Polr1a	100	64.501	Peromyscus_maniculatus_bairdii
ENSXMAG00000004032	polr1a	95	63.132	ENSPCIG00000004222	POLR1A	99	63.437	Phascolarctos_cinereus
ENSXMAG00000004032	polr1a	100	93.879	ENSPFOG00000005025	polr1a	100	93.761	Poecilia_formosa
ENSXMAG00000004032	polr1a	100	94.454	ENSPLAG00000021389	polr1a	100	94.218	Poecilia_latipinna
ENSXMAG00000004032	polr1a	100	89.671	ENSPMEG00000006463	polr1a	100	90.211	Poecilia_mexicana
ENSXMAG00000004032	polr1a	100	93.886	ENSPREG00000002389	polr1a	100	93.651	Poecilia_reticulata
ENSXMAG00000004032	polr1a	100	64.351	ENSPPYG00000012217	POLR1A	100	65.240	Pongo_abelii
ENSXMAG00000004032	polr1a	91	64.241	ENSPCAG00000011582	POLR1A	91	64.087	Procavia_capensis
ENSXMAG00000004032	polr1a	100	64.351	ENSPCOG00000026987	POLR1A	100	65.046	Propithecus_coquereli
ENSXMAG00000004032	polr1a	94	64.684	ENSPVAG00000012674	POLR1A	95	64.745	Pteropus_vampyrus
ENSXMAG00000004032	polr1a	100	82.422	ENSPNYG00000000026	polr1a	100	82.422	Pundamilia_nyererei
ENSXMAG00000004032	polr1a	100	70.719	ENSPNAG00000019223	polr1a	100	70.485	Pygocentrus_nattereri
ENSXMAG00000004032	polr1a	100	64.344	ENSRNOG00000009545	Polr1a	100	64.443	Rattus_norvegicus
ENSXMAG00000004032	polr1a	100	64.638	ENSRBIG00000028335	POLR1A	100	65.645	Rhinopithecus_bieti
ENSXMAG00000004032	polr1a	100	64.638	ENSRROG00000031473	POLR1A	100	65.645	Rhinopithecus_roxellana
ENSXMAG00000004032	polr1a	99	36.197	YOR341W	RPA190	99	36.156	Saccharomyces_cerevisiae
ENSXMAG00000004032	polr1a	100	65.104	ENSSBOG00000030262	POLR1A	100	65.336	Saimiri_boliviensis_boliviensis
ENSXMAG00000004032	polr1a	100	59.336	ENSSHAG00000014739	POLR1A	100	59.677	Sarcophilus_harrisii
ENSXMAG00000004032	polr1a	100	69.172	ENSSFOG00015019716	polr1a	100	70.213	Scleropages_formosus
ENSXMAG00000004032	polr1a	100	81.678	ENSSMAG00000014342	polr1a	100	81.591	Scophthalmus_maximus
ENSXMAG00000004032	polr1a	100	82.728	ENSSDUG00000014631	polr1a	100	83.304	Seriola_dumerili
ENSXMAG00000004032	polr1a	100	79.462	ENSSLDG00000024095	polr1a	100	79.696	Seriola_lalandi_dorsalis
ENSXMAG00000004032	polr1a	70	95.122	ENSSARG00000003136	-	70	95.122	Sorex_araneus
ENSXMAG00000004032	polr1a	100	64.219	ENSSPUG00000004215	POLR1A	98	71.795	Sphenodon_punctatus
ENSXMAG00000004032	polr1a	63	84.713	ENSSPAG00000016341	polr1a	94	84.598	Stegastes_partitus
ENSXMAG00000004032	polr1a	83	66.063	ENSSSCG00000008226	POLR1A	99	66.015	Sus_scrofa
ENSXMAG00000004032	polr1a	99	64.307	ENSTGUG00000010704	POLR1A	100	64.012	Taeniopygia_guttata
ENSXMAG00000004032	polr1a	100	75.485	ENSTRUG00000002210	polr1a	99	75.911	Takifugu_rubripes
ENSXMAG00000004032	polr1a	100	70.377	ENSTNIG00000010116	polr1a	100	70.261	Tetraodon_nigroviridis
ENSXMAG00000004032	polr1a	73	80.531	ENSTBEG00000008646	POLR1A	74	80.531	Tupaia_belangeri
ENSXMAG00000004032	polr1a	100	62.001	ENSTTRG00000008597	POLR1A	100	62.507	Tursiops_truncatus
ENSXMAG00000004032	polr1a	69	66.328	ENSUAMG00000012158	-	94	66.582	Ursus_americanus
ENSXMAG00000004032	polr1a	100	64.851	ENSUMAG00000006700	POLR1A	97	68.264	Ursus_maritimus
ENSXMAG00000004032	polr1a	100	64.624	ENSVVUG00000001245	POLR1A	100	65.139	Vulpes_vulpes
ENSXMAG00000004032	polr1a	100	62.073	ENSXETG00000001952	polr1a	99	63.110	Xenopus_tropicalis