EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000004102 (Gene tree)
Gene ID
102236335
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
26655 bases
Position
chr18:27850858-27877512
Accession
102236335
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000004141tRNA_anti-codonPF01336.251.7e-1411
ENSXMAP00000036796tRNA_anti-codonPF01336.251.8e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000029846-2908XM_023352057ENSXMAP00000036796600 (aa)XP_023207825UPI000C6DD9B6
ENSXMAT00000004146-2717-ENSXMAP00000004141558 (aa)-M3ZPJ8
Gene Model
Click here to download ENSXMAG00000004102's gene model file
Pathways
Pathway IDPathway NameSource
xma03030DNA replicationKEGG
xma03420Nucleotide excision repairKEGG
xma03430Mismatch repairKEGG
xma03440Homologous recombinationKEGG
xma03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004102's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000004102rpa19961.677ENSAPOG00000019409RPA19061.677Acanthochromis_polyacanthus
ENSXMAG00000004102rpa19984.229ENSAPOG00000011658rpa19983.167Acanthochromis_polyacanthus
ENSXMAG00000004102rpa19963.509ENSAMEG00000007706RPA19861.412Ailuropoda_melanoleuca
ENSXMAG00000004102rpa19975.714ENSACIG00000007277rpa19975.779Amphilophus_citrinellus
ENSXMAG00000004102rpa19961.646ENSACIG00000012881RPA19961.670Amphilophus_citrinellus
ENSXMAG00000004102rpa19958.746ENSAOCG00000009003RPA19958.514Amphiprion_ocellaris
ENSXMAG00000004102rpa19983.094ENSAOCG00000023376rpa19982.471Amphiprion_ocellaris
ENSXMAG00000004102rpa19469.161ENSAPEG00000019132RPA19957.315Amphiprion_percula
ENSXMAG00000004102rpa19983.124ENSAPEG00000008634rpa19982.638Amphiprion_percula
ENSXMAG00000004102rpa19958.592ENSATEG00000006443RPA19958.218Anabas_testudineus
ENSXMAG00000004102rpa110082.111ENSATEG00000022024rpa110081.961Anabas_testudineus
ENSXMAG00000004102rpa19954.829ENSAPLG00000012442RPA19954.532Anas_platyrhynchos
ENSXMAG00000004102rpa19956.250ENSACAG00000014490RPA19857.355Anolis_carolinensis
ENSXMAG00000004102rpa19963.556ENSANAG00000023456RPA19862.988Aotus_nancymaae
ENSXMAG00000004102rpa19982.437ENSACLG00000006640rpa19982.593Astatotilapia_calliptera
ENSXMAG00000004102rpa19961.913ENSACLG00000005223RPA19961.417Astatotilapia_calliptera
ENSXMAG00000004102rpa110076.827ENSAMXG00000008418rpa19976.539Astyanax_mexicanus
ENSXMAG00000004102rpa19962.238ENSBTAG00000009711RPA19960.650Bos_taurus
ENSXMAG00000004102rpa18032.301WBGene00017546rpa-16832.301Caenorhabditis_elegans
ENSXMAG00000004102rpa19962.257ENSCJAG00000001848RPA19961.047Callithrix_jacchus
ENSXMAG00000004102rpa19962.610ENSCAFG00000019249RPA19961.148Canis_familiaris
ENSXMAG00000004102rpa19962.610ENSCAFG00020009847RPA19961.148Canis_lupus_dingo
ENSXMAG00000004102rpa19961.780ENSCHIG00000026308RPA19960.586Capra_hircus
ENSXMAG00000004102rpa19961.972ENSTSYG00000003482-9960.393Carlito_syrichta
ENSXMAG00000004102rpa19963.732ENSCPOG00000000035RPA19962.171Cavia_porcellus
ENSXMAG00000004102rpa19952.028ENSCCAG00000010981RPA19951.391Cebus_capucinus
ENSXMAG00000004102rpa19959.083ENSCLAG00000015045-9857.990Chinchilla_lanigera
ENSXMAG00000004102rpa19962.676ENSCLAG00000005185-9961.349Chinchilla_lanigera
ENSXMAG00000004102rpa19952.817ENSCSAG00000013833RPA19951.882Chlorocebus_sabaeus
ENSXMAG00000004102rpa19961.014ENSCHOG00000013540-9960.714Choloepus_hoffmanni
ENSXMAG00000004102rpa17768.578ENSCHOG00000009454-9968.578Choloepus_hoffmanni
ENSXMAG00000004102rpa19963.540ENSCPBG00000020377RPA19963.540Chrysemys_picta_bellii
ENSXMAG00000004102rpa19943.571ENSCING00000023482-9842.928Ciona_intestinalis
ENSXMAG00000004102rpa19962.478ENSCANG00000030911RPA19961.054Colobus_angolensis_palliatus
ENSXMAG00000004102rpa19962.478ENSCGRG00001008197Rpa19960.877Cricetulus_griseus_chok1gshd
ENSXMAG00000004102rpa18763.241ENSCGRG00000000582Rpa19963.241Cricetulus_griseus_crigri
ENSXMAG00000004102rpa110079.292ENSCSEG00000013066rpa110078.583Cynoglossus_semilaevis
ENSXMAG00000004102rpa19956.701ENSCSEG00000012726RPA19956.701Cynoglossus_semilaevis
ENSXMAG00000004102rpa110088.850ENSCVAG00000019431rpa110088.468Cyprinodon_variegatus
ENSXMAG00000004102rpa19568.496ENSCVAG00000013446-8668.496Cyprinodon_variegatus
ENSXMAG00000004102rpa110074.419ENSDARG00000003938rpa19973.579Danio_rerio
ENSXMAG00000004102rpa19963.204ENSDNOG00000017218RPA19861.755Dasypus_novemcinctus
ENSXMAG00000004102rpa19963.445ENSDORG00000006199Rpa19961.765Dipodomys_ordii
ENSXMAG00000004102rpa19942.032FBgn0010173RpA-709942.787Drosophila_melanogaster
ENSXMAG00000004102rpa18272.340ENSETEG00000017608RPA18172.340Echinops_telfairi
ENSXMAG00000004102rpa19963.540ENSEASG00005009372RPA19862.167Equus_asinus_asinus
ENSXMAG00000004102rpa19963.093ENSECAG00000023886RPA19961.741Equus_caballus
ENSXMAG00000004102rpa17568.735ENSEEUG00000002186-6868.735Erinaceus_europaeus
ENSXMAG00000004102rpa19979.004ENSELUG00000021071rpa19977.612Esox_lucius
ENSXMAG00000004102rpa19559.851ENSELUG00000006136RPA19959.851Esox_lucius
ENSXMAG00000004102rpa19962.632ENSFCAG00000006306RPA19961.175Felis_catus
ENSXMAG00000004102rpa19963.860ENSFALG00000006575RPA19863.054Ficedula_albicollis
ENSXMAG00000004102rpa19963.700ENSFDAG00000007720RPA19962.153Fukomys_damarensis
ENSXMAG00000004102rpa110088.988ENSFHEG00000003580rpa110088.926Fundulus_heteroclitus
ENSXMAG00000004102rpa19976.302ENSGMOG00000010382rpa19975.503Gadus_morhua
ENSXMAG00000004102rpa19961.754ENSGALG00000003072RPA19860.920Gallus_gallus
ENSXMAG00000004102rpa110096.595ENSGAFG00000012916rpa110096.167Gambusia_affinis
ENSXMAG00000004102rpa19958.660ENSGAFG00000020953RPA19957.887Gambusia_affinis
ENSXMAG00000004102rpa110081.283ENSGACG00000010856rpa110080.265Gasterosteus_aculeatus
ENSXMAG00000004102rpa19962.917ENSGAGG00000013611RPA19962.131Gopherus_agassizii
ENSXMAG00000004102rpa19963.196ENSGGOG00000014186RPA19961.500Gorilla_gorilla
ENSXMAG00000004102rpa19957.473ENSHBUG00000009348RPA19857.439Haplochromis_burtoni
ENSXMAG00000004102rpa19985.663ENSHBUG00000017773rpa19984.667Haplochromis_burtoni
ENSXMAG00000004102rpa19963.333ENSHGLG00000008846RPA19961.803Heterocephalus_glaber_female
ENSXMAG00000004102rpa19963.333ENSHGLG00100017755-9961.803Heterocephalus_glaber_male
ENSXMAG00000004102rpa19959.578ENSHGLG00100000799-9858.128Heterocephalus_glaber_male
ENSXMAG00000004102rpa19954.021ENSHGLG00100002005-9952.280Heterocephalus_glaber_male
ENSXMAG00000004102rpa110073.730ENSHCOG00000001401rpa110072.757Hippocampus_comes
ENSXMAG00000004102rpa19945.907ENSHCOG00000000351RPA19744.684Hippocampus_comes
ENSXMAG00000004102rpa19975.532ENSIPUG00000004400rpa19974.627Ictalurus_punctatus
ENSXMAG00000004102rpa19861.579ENSSTOG00000022475RPA19561.579Ictidomys_tridecemlineatus
ENSXMAG00000004102rpa19963.112ENSJJAG00000000876Rpa19862.712Jaculus_jaculus
ENSXMAG00000004102rpa19960.387ENSKMAG00000000234RPA19959.442Kryptolebias_marmoratus
ENSXMAG00000004102rpa110079.298ENSKMAG00000005605rpa110079.739Kryptolebias_marmoratus
ENSXMAG00000004102rpa19768.027ENSLBEG00000002281RPA18368.421Labrus_bergylta
ENSXMAG00000004102rpa19981.317ENSLBEG00000021604rpa19980.132Labrus_bergylta
ENSXMAG00000004102rpa18760.606ENSLACG00000007210RPA19960.606Latimeria_chalumnae
ENSXMAG00000004102rpa19971.071ENSLOCG00000006397rpa19970.216Lepisosteus_oculatus
ENSXMAG00000004102rpa19961.979ENSLAFG00000015354RPA19960.194Loxodonta_africana
ENSXMAG00000004102rpa18259.499ENSMFAG00000036138-9859.237Macaca_fascicularis
ENSXMAG00000004102rpa19957.774ENSMMUG00000002442-9955.829Macaca_mulatta
ENSXMAG00000004102rpa19962.522ENSMMUG00000011604-9961.120Macaca_mulatta
ENSXMAG00000004102rpa18762.971ENSMNEG00000029837-9662.971Macaca_nemestrina
ENSXMAG00000004102rpa19962.172ENSMNEG00000031632-9861.630Macaca_nemestrina
ENSXMAG00000004102rpa19959.130ENSMLEG00000038768-9758.923Mandrillus_leucophaeus
ENSXMAG00000004102rpa110084.079ENSMAMG00000017993rpa110083.195Mastacembelus_armatus
ENSXMAG00000004102rpa19268.605ENSMAMG00000020097RPA19262.048Mastacembelus_armatus
ENSXMAG00000004102rpa19961.913ENSMZEG00005024731RPA19961.417Maylandia_zebra
ENSXMAG00000004102rpa19985.663ENSMZEG00005007551rpa19984.667Maylandia_zebra
ENSXMAG00000004102rpa19962.124ENSMGAG00000005315RPA19860.899Meleagris_gallopavo
ENSXMAG00000004102rpa19962.917ENSMAUG00000010474Rpa19862.542Mesocricetus_auratus
ENSXMAG00000004102rpa19962.982ENSMICG00000012867RPA19961.990Microcebus_murinus
ENSXMAG00000004102rpa19962.742ENSMOCG00000013019Rpa19961.412Microtus_ochrogaster
ENSXMAG00000004102rpa110081.317ENSMMOG00000014292rpa110081.336Mola_mola
ENSXMAG00000004102rpa19960.638ENSMMOG00000010868RPA19860.201Mola_mola
ENSXMAG00000004102rpa110062.522ENSMODG00000010549RPA19961.047Monodelphis_domestica
ENSXMAG00000004102rpa19968.192ENSMALG00000001208RPA18668.192Monopterus_albus
ENSXMAG00000004102rpa110085.689ENSMALG00000011453rpa110084.859Monopterus_albus
ENSXMAG00000004102rpa19963.222MGP_CAROLIEiJ_G0016734Rpa19961.726Mus_caroli
ENSXMAG00000004102rpa19961.806ENSMUSG00000000751Rpa19960.097Mus_musculus
ENSXMAG00000004102rpa19963.368MGP_PahariEiJ_G0017871Rpa19961.750Mus_pahari
ENSXMAG00000004102rpa19961.698MGP_SPRETEiJ_G0017577Rpa19960.000Mus_spretus
ENSXMAG00000004102rpa19962.917ENSMPUG00000013119RPA19961.275Mustela_putorius_furo
ENSXMAG00000004102rpa19962.478ENSMLUG00000006113RPA19561.785Myotis_lucifugus
ENSXMAG00000004102rpa19962.807ENSNGAG00000004522Rpa19562.017Nannospalax_galili
ENSXMAG00000004102rpa19960.746ENSNBRG00000009672RPA19759.966Neolamprologus_brichardi
ENSXMAG00000004102rpa19982.079ENSNBRG00000020595rpa19982.250Neolamprologus_brichardi
ENSXMAG00000004102rpa19963.158ENSNLEG00000017149RPA19961.928Nomascus_leucogenys
ENSXMAG00000004102rpa19953.860ENSMEUG00000006714RPA19753.299Notamacropus_eugenii
ENSXMAG00000004102rpa19961.285ENSODEG00000009038RPA19660.943Octodon_degus
ENSXMAG00000004102rpa19984.211ENSONIG00000013135rpa19983.333Oreochromis_niloticus
ENSXMAG00000004102rpa110063.351ENSOANG00000010880RPA19962.252Ornithorhynchus_anatinus
ENSXMAG00000004102rpa19960.033ENSOCUG00000001504RPA19958.824Oryctolagus_cuniculus
ENSXMAG00000004102rpa19957.447ENSORLG00000003368RPA19956.989Oryzias_latipes
ENSXMAG00000004102rpa19982.734ENSORLG00000004856rpa19982.609Oryzias_latipes
ENSXMAG00000004102rpa19983.094ENSORLG00020008980rpa19982.943Oryzias_latipes_hni
ENSXMAG00000004102rpa19955.377ENSORLG00020015284RPA19955.053Oryzias_latipes_hni
ENSXMAG00000004102rpa19983.094ENSORLG00015013982rpa19982.943Oryzias_latipes_hsok
ENSXMAG00000004102rpa19958.097ENSORLG00015020383RPA19957.590Oryzias_latipes_hsok
ENSXMAG00000004102rpa17664.471ENSORLG00015005867-9764.471Oryzias_latipes_hsok
ENSXMAG00000004102rpa19980.769ENSOMEG00000004704rpa19980.769Oryzias_melastigma
ENSXMAG00000004102rpa19959.431ENSOMEG00000011040RPA19958.711Oryzias_melastigma
ENSXMAG00000004102rpa17475.439ENSOGAG00000029379-9675.439Otolemur_garnettii
ENSXMAG00000004102rpa19962.566ENSOGAG00000005581-9960.948Otolemur_garnettii
ENSXMAG00000004102rpa19962.195ENSOARG00000014479RPA19960.976Ovis_aries
ENSXMAG00000004102rpa19963.684ENSPPAG00000039680RPA19962.418Pan_paniscus
ENSXMAG00000004102rpa19962.456ENSPPRG00000011807RPA19861.311Panthera_pardus
ENSXMAG00000004102rpa19962.456ENSPTIG00000007898RPA19961.011Panthera_tigris_altaica
ENSXMAG00000004102rpa19963.860ENSPTRG00000008539RPA19962.582Pan_troglodytes
ENSXMAG00000004102rpa19962.697ENSPANG00000024592RPA19961.075Papio_anubis
ENSXMAG00000004102rpa19475.281ENSPKIG00000008053rpa19374.695Paramormyrops_kingsleyae
ENSXMAG00000004102rpa19963.269ENSPSIG00000015617RPA19763.220Pelodiscus_sinensis
ENSXMAG00000004102rpa19961.002ENSPMGG00000000543RPA19961.002Periophthalmus_magnuspinnatus
ENSXMAG00000004102rpa19978.456ENSPMGG00000011589rpa19878.709Periophthalmus_magnuspinnatus
ENSXMAG00000004102rpa19963.860ENSPEMG00000021061Rpa19962.153Peromyscus_maniculatus_bairdii
ENSXMAG00000004102rpa19962.478ENSPCIG00000019049RPA19960.884Phascolarctos_cinereus
ENSXMAG00000004102rpa110095.520ENSPFOG00000003987rpa110095.500Poecilia_formosa
ENSXMAG00000004102rpa110095.341ENSPLAG00000004984rpa110095.333Poecilia_latipinna
ENSXMAG00000004102rpa19458.783ENSPLAG00000008844-9758.279Poecilia_latipinna
ENSXMAG00000004102rpa110095.699ENSPMEG00000020602rpa110095.667Poecilia_mexicana
ENSXMAG00000004102rpa19458.435ENSPMEG00000003627-9657.955Poecilia_mexicana
ENSXMAG00000004102rpa19269.037ENSPREG00000010119RPA19956.250Poecilia_reticulata
ENSXMAG00000004102rpa19485.905ENSPREG00000010174rpa19585.868Poecilia_reticulata
ENSXMAG00000004102rpa19962.917ENSPCOG00000001799RPA19961.275Propithecus_coquereli
ENSXMAG00000004102rpa19962.390ENSPVAG00000002149RPA19960.784Pteropus_vampyrus
ENSXMAG00000004102rpa19985.842ENSPNYG00000016316rpa19985.000Pundamilia_nyererei
ENSXMAG00000004102rpa19961.745ENSPNYG00000024165RPA19961.260Pundamilia_nyererei
ENSXMAG00000004102rpa110068.149ENSPNAG00000008599rpa19668.586Pygocentrus_nattereri
ENSXMAG00000004102rpa19969.268ENSRNOG00000003123Rpa19962.029Rattus_norvegicus
ENSXMAG00000004102rpa19962.852ENSRBIG00000036587RPA19961.513Rhinopithecus_bieti
ENSXMAG00000004102rpa19957.570ENSRROG00000043278RPA19856.579Rhinopithecus_roxellana
ENSXMAG00000004102rpa19432.534YAR007CRFA19332.534Saccharomyces_cerevisiae
ENSXMAG00000004102rpa19762.950ENSSBOG00000030233RPA19663.555Saimiri_boliviensis_boliviensis
ENSXMAG00000004102rpa19962.478ENSSHAG00000007969RPA19562.732Sarcophilus_harrisii
ENSXMAG00000004102rpa110077.620ENSSFOG00015005362rpa19276.578Scleropages_formosus
ENSXMAG00000004102rpa19956.402ENSSMAG00000019746RPA19956.991Scophthalmus_maximus
ENSXMAG00000004102rpa19970.139ENSSDUG00000016358RPA19763.400Seriola_dumerili
ENSXMAG00000004102rpa110084.973ENSSDUG00000011949rpa110084.027Seriola_dumerili
ENSXMAG00000004102rpa110084.973ENSSLDG00000011806rpa110084.027Seriola_lalandi_dorsalis
ENSXMAG00000004102rpa19269.907ENSSLDG00000020784RPA19363.200Seriola_lalandi_dorsalis
ENSXMAG00000004102rpa19949.825ENSSARG00000007506RPA19949.085Sorex_araneus
ENSXMAG00000004102rpa110060.915ENSSPUG00000007223RPA19860.781Sphenodon_punctatus
ENSXMAG00000004102rpa110083.900ENSSPAG00000009903rpa110083.028Stegastes_partitus
ENSXMAG00000004102rpa19963.489ENSSPAG00000011165RPA19862.775Stegastes_partitus
ENSXMAG00000004102rpa19961.431ENSSSCG00000017822RPA19861.486Sus_scrofa
ENSXMAG00000004102rpa19962.478ENSTGUG00000005775RPA19861.881Taeniopygia_guttata
ENSXMAG00000004102rpa19980.396ENSTRUG00000003616rpa19979.431Takifugu_rubripes
ENSXMAG00000004102rpa19967.523ENSTRUG00000000405RPA19067.356Takifugu_rubripes
ENSXMAG00000004102rpa110082.456ENSTNIG00000016199rpa19981.639Tetraodon_nigroviridis
ENSXMAG00000004102rpa17868.636ENSTBEG00000002709RPA17468.636Tupaia_belangeri
ENSXMAG00000004102rpa19961.780ENSTTRG00000001169RPA19960.586Tursiops_truncatus
ENSXMAG00000004102rpa18971.154ENSUAMG00000015676RPA19571.154Ursus_americanus
ENSXMAG00000004102rpa19962.298ENSUMAG00000009328RPA19961.148Ursus_maritimus
ENSXMAG00000004102rpa19960.733ENSVPAG00000009443RPA19959.024Vicugna_pacos
ENSXMAG00000004102rpa19962.257ENSVVUG00000021715RPA19960.820Vulpes_vulpes
ENSXMAG00000004102rpa110066.607ENSXETG00000013538rpa19965.672Xenopus_tropicalis
ENSXMAG00000004102rpa19499.618ENSXCOG00000010068rpa19498.387Xiphophorus_couchianus
ENSXMAG00000004102rpa19961.828ENSXCOG00000009899-9961.431Xiphophorus_couchianus
ENSXMAG00000004102rpa19368.807ENSXMAG00000010333RPA18168.807Xiphophorus_maculatus

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