EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004178 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 16190 bases
Position: chr6:2909148-2925337
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004199	ResIII	PF04851.15	5.1e-11	1	1
ENSXMAP00000004199	DEAD	PF00270.29	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004204	-	2607	-	ENSXMAP00000004199	869 (aa)	-	M3ZPQ6

Gene Model

Click here to download ENSXMAG00000004178's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004178's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004178	hfm1	92	66.945	ENSG00000162669	HFM1	58	66.945	Homo_sapiens
ENSXMAG00000004178	hfm1	100	81.995	ENSAPOG00000005304	hfm1	99	81.995	Acanthochromis_polyacanthus
ENSXMAG00000004178	hfm1	91	67.883	ENSAMEG00000000432	HFM1	57	67.883	Ailuropoda_melanoleuca
ENSXMAG00000004178	hfm1	90	82.143	ENSACIG00000021553	hfm1	75	82.143	Amphilophus_citrinellus
ENSXMAG00000004178	hfm1	100	83.199	ENSAOCG00000022839	hfm1	99	83.199	Amphiprion_ocellaris
ENSXMAG00000004178	hfm1	100	82.874	ENSAPEG00000014316	hfm1	99	82.874	Amphiprion_percula
ENSXMAG00000004178	hfm1	91	81.630	ENSATEG00000019181	hfm1	67	81.842	Anabas_testudineus
ENSXMAG00000004178	hfm1	93	65.680	ENSAPLG00000013639	HFM1	59	65.680	Anas_platyrhynchos
ENSXMAG00000004178	hfm1	92	65.909	ENSANAG00000029513	HFM1	59	65.909	Aotus_nancymaae
ENSXMAG00000004178	hfm1	100	77.727	ENSACLG00000009033	hfm1	99	77.842	Astatotilapia_calliptera
ENSXMAG00000004178	hfm1	99	74.233	ENSAMXG00000006108	hfm1	61	74.233	Astyanax_mexicanus
ENSXMAG00000004178	hfm1	91	67.397	ENSBTAG00000020856	HFM1	57	67.397	Bos_taurus
ENSXMAG00000004178	hfm1	100	66.507	ENSCJAG00000001843	HFM1	58	66.507	Callithrix_jacchus
ENSXMAG00000004178	hfm1	91	67.600	ENSCAFG00000020187	HFM1	57	67.600	Canis_familiaris
ENSXMAG00000004178	hfm1	92	66.908	ENSTSYG00000014250	HFM1	58	66.908	Carlito_syrichta
ENSXMAG00000004178	hfm1	93	66.307	ENSCPOG00000007421	HFM1	60	66.307	Cavia_porcellus
ENSXMAG00000004178	hfm1	92	66.189	ENSCCAG00000033206	HFM1	58	66.189	Cebus_capucinus
ENSXMAG00000004178	hfm1	93	66.231	ENSCATG00000030987	HFM1	59	66.231	Cercocebus_atys
ENSXMAG00000004178	hfm1	92	66.748	ENSCLAG00000005173	HFM1	56	66.748	Chinchilla_lanigera
ENSXMAG00000004178	hfm1	77	50.769	ENSCSAVG00000005094	-	100	50.769	Ciona_savignyi
ENSXMAG00000004178	hfm1	87	63.165	ENSCGRG00001016995	Hfm1	56	63.165	Cricetulus_griseus_chok1gshd
ENSXMAG00000004178	hfm1	92	64.891	ENSCGRG00000017181	Hfm1	58	64.891	Cricetulus_griseus_crigri
ENSXMAG00000004178	hfm1	93	75.291	ENSCSEG00000017659	hfm1	79	75.291	Cynoglossus_semilaevis
ENSXMAG00000004178	hfm1	79	87.324	ENSCVAG00000005075	hfm1	86	87.324	Cyprinodon_variegatus
ENSXMAG00000004178	hfm1	100	71.463	ENSDARG00000104288	hfm1	84	71.463	Danio_rerio
ENSXMAG00000004178	hfm1	91	66.910	ENSDNOG00000004776	HFM1	55	66.910	Dasypus_novemcinctus
ENSXMAG00000004178	hfm1	97	61.996	ENSDORG00000014661	Hfm1	61	61.996	Dipodomys_ordii
ENSXMAG00000004178	hfm1	89	67.459	ENSEASG00005015424	HFM1	80	67.459	Equus_asinus_asinus
ENSXMAG00000004178	hfm1	92	67.110	ENSECAG00000024039	HFM1	56	67.110	Equus_caballus
ENSXMAG00000004178	hfm1	100	75.057	ENSELUG00000018944	hfm1	97	75.057	Esox_lucius
ENSXMAG00000004178	hfm1	93	66.627	ENSFCAG00000029116	HFM1	58	66.627	Felis_catus
ENSXMAG00000004178	hfm1	91	66.545	ENSFALG00000001781	HFM1	58	66.545	Ficedula_albicollis
ENSXMAG00000004178	hfm1	92	66.344	ENSFDAG00000020816	HFM1	56	66.344	Fukomys_damarensis
ENSXMAG00000004178	hfm1	90	72.626	ENSGMOG00000017436	hfm1	84	72.626	Gadus_morhua
ENSXMAG00000004178	hfm1	100	96.785	ENSGAFG00000018093	hfm1	100	96.785	Gambusia_affinis
ENSXMAG00000004178	hfm1	90	76.326	ENSGACG00000015686	hfm1	84	76.326	Gasterosteus_aculeatus
ENSXMAG00000004178	hfm1	92	66.945	ENSGGOG00000038524	HFM1	58	66.945	Gorilla_gorilla
ENSXMAG00000004178	hfm1	90	80.911	ENSHBUG00000007309	hfm1	77	80.911	Haplochromis_burtoni
ENSXMAG00000004178	hfm1	91	80.202	ENSHCOG00000019632	hfm1	98	80.202	Hippocampus_comes
ENSXMAG00000004178	hfm1	99	73.953	ENSIPUG00000017020	hfm1	97	73.953	Ictalurus_punctatus
ENSXMAG00000004178	hfm1	92	65.296	ENSJJAG00000017198	Hfm1	59	65.296	Jaculus_jaculus
ENSXMAG00000004178	hfm1	90	83.456	ENSKMAG00000002282	hfm1	84	83.456	Kryptolebias_marmoratus
ENSXMAG00000004178	hfm1	100	77.752	ENSLBEG00000006759	hfm1	98	77.982	Labrus_bergylta
ENSXMAG00000004178	hfm1	90	67.354	ENSLACG00000010698	HFM1	77	67.643	Latimeria_chalumnae
ENSXMAG00000004178	hfm1	95	69.778	ENSLOCG00000004931	hfm1	79	69.778	Lepisosteus_oculatus
ENSXMAG00000004178	hfm1	75	68.142	ENSLAFG00000015903	-	91	68.142	Loxodonta_africana
ENSXMAG00000004178	hfm1	93	64.124	ENSMFAG00000003649	HFM1	58	64.124	Macaca_fascicularis
ENSXMAG00000004178	hfm1	93	66.468	ENSMMUG00000006819	HFM1	59	66.468	Macaca_mulatta
ENSXMAG00000004178	hfm1	91	84.237	ENSMAMG00000004623	hfm1	97	84.237	Mastacembelus_armatus
ENSXMAG00000004178	hfm1	100	77.727	ENSMZEG00005004679	hfm1	99	77.842	Maylandia_zebra
ENSXMAG00000004178	hfm1	83	65.604	ENSMGAG00000008437	HFM1	93	65.604	Meleagris_gallopavo
ENSXMAG00000004178	hfm1	92	65.133	ENSMAUG00000018858	Hfm1	57	65.133	Mesocricetus_auratus
ENSXMAG00000004178	hfm1	92	66.787	ENSMICG00000037935	HFM1	58	66.787	Microcebus_murinus
ENSXMAG00000004178	hfm1	92	65.375	ENSMOCG00000014812	Hfm1	58	65.375	Microtus_ochrogaster
ENSXMAG00000004178	hfm1	100	81.703	ENSMMOG00000006148	hfm1	98	81.703	Mola_mola
ENSXMAG00000004178	hfm1	100	80.712	ENSMALG00000002401	hfm1	99	80.712	Monopterus_albus
ENSXMAG00000004178	hfm1	83	67.939	MGP_CAROLIEiJ_G0027496	Hfm1	53	67.939	Mus_caroli
ENSXMAG00000004178	hfm1	92	65.375	ENSMUSG00000043410	Hfm1	58	65.375	Mus_musculus
ENSXMAG00000004178	hfm1	94	64.623	MGP_PahariEiJ_G0017268	Hfm1	59	64.623	Mus_pahari
ENSXMAG00000004178	hfm1	92	65.659	MGP_SPRETEiJ_G0028495	Hfm1	58	65.659	Mus_spretus
ENSXMAG00000004178	hfm1	91	67.030	ENSMPUG00000004594	HFM1	55	67.030	Mustela_putorius_furo
ENSXMAG00000004178	hfm1	93	67.025	ENSMLUG00000010200	HFM1	58	67.025	Myotis_lucifugus
ENSXMAG00000004178	hfm1	91	82.702	ENSNBRG00000002910	hfm1	97	82.702	Neolamprologus_brichardi
ENSXMAG00000004178	hfm1	92	65.119	ENSNLEG00000010285	HFM1	58	65.119	Nomascus_leucogenys
ENSXMAG00000004178	hfm1	86	65.035	ENSMEUG00000015788	HFM1	61	65.035	Notamacropus_eugenii
ENSXMAG00000004178	hfm1	92	60.943	ENSOPRG00000013916	HFM1	58	60.943	Ochotona_princeps
ENSXMAG00000004178	hfm1	93	81.601	ENSONIG00000010590	hfm1	80	81.699	Oreochromis_niloticus
ENSXMAG00000004178	hfm1	90	83.185	ENSORLG00000026844	hfm1	100	83.185	Oryzias_latipes
ENSXMAG00000004178	hfm1	100	70.318	ENSORLG00020002951	hfm1	74	70.318	Oryzias_latipes_hni
ENSXMAG00000004178	hfm1	100	75.521	ENSOMEG00000016474	hfm1	70	75.521	Oryzias_melastigma
ENSXMAG00000004178	hfm1	93	66.587	ENSOGAG00000032369	HFM1	68	66.587	Otolemur_garnettii
ENSXMAG00000004178	hfm1	93	66.906	ENSOARG00000015812	HFM1	58	66.906	Ovis_aries
ENSXMAG00000004178	hfm1	92	67.184	ENSPPAG00000024582	HFM1	63	67.184	Pan_paniscus
ENSXMAG00000004178	hfm1	93	66.627	ENSPPRG00000003270	HFM1	58	66.627	Panthera_pardus
ENSXMAG00000004178	hfm1	93	66.627	ENSPTIG00000018881	HFM1	58	66.627	Panthera_tigris_altaica
ENSXMAG00000004178	hfm1	92	67.184	ENSPTRG00000000948	HFM1	58	67.184	Pan_troglodytes
ENSXMAG00000004178	hfm1	93	66.112	ENSPANG00000009838	HFM1	59	66.112	Papio_anubis
ENSXMAG00000004178	hfm1	99	70.771	ENSPKIG00000003810	hfm1	99	70.771	Paramormyrops_kingsleyae
ENSXMAG00000004178	hfm1	90	78.599	ENSPMGG00000011059	hfm1	98	78.599	Periophthalmus_magnuspinnatus
ENSXMAG00000004178	hfm1	92	65.254	ENSPEMG00000022852	Hfm1	57	65.254	Peromyscus_maniculatus_bairdii
ENSXMAG00000004178	hfm1	100	67.597	ENSPCIG00000014233	HFM1	64	67.597	Phascolarctos_cinereus
ENSXMAG00000004178	hfm1	90	94.212	ENSPFOG00000017194	hfm1	78	94.212	Poecilia_formosa
ENSXMAG00000004178	hfm1	90	94.096	ENSPLAG00000000571	hfm1	74	94.096	Poecilia_latipinna
ENSXMAG00000004178	hfm1	90	94.219	ENSPMEG00000019475	hfm1	75	94.219	Poecilia_mexicana
ENSXMAG00000004178	hfm1	100	95.972	ENSPREG00000007803	hfm1	100	95.972	Poecilia_reticulata
ENSXMAG00000004178	hfm1	92	66.945	ENSPPYG00000001163	HFM1	58	66.945	Pongo_abelii
ENSXMAG00000004178	hfm1	92	61.669	ENSPVAG00000009713	HFM1	59	61.669	Pteropus_vampyrus
ENSXMAG00000004178	hfm1	100	77.408	ENSPNYG00000001795	hfm1	99	77.523	Pundamilia_nyererei
ENSXMAG00000004178	hfm1	100	76.119	ENSPNAG00000010865	hfm1	91	76.119	Pygocentrus_nattereri
ENSXMAG00000004178	hfm1	94	64.623	ENSRNOG00000023299	Hfm1	59	64.623	Rattus_norvegicus
ENSXMAG00000004178	hfm1	100	66.350	ENSRROG00000045569	HFM1	63	66.350	Rhinopithecus_roxellana
ENSXMAG00000004178	hfm1	93	66.228	ENSSBOG00000027456	HFM1	59	66.228	Saimiri_boliviensis_boliviensis
ENSXMAG00000004178	hfm1	66	67.987	ENSSHAG00000014616	-	69	67.987	Sarcophilus_harrisii
ENSXMAG00000004178	hfm1	100	73.583	ENSSFOG00015020129	hfm1	60	73.583	Scleropages_formosus
ENSXMAG00000004178	hfm1	91	80.704	ENSSMAG00000006907	hfm1	86	76.239	Scophthalmus_maximus
ENSXMAG00000004178	hfm1	100	81.954	ENSSDUG00000011424	hfm1	99	81.954	Seriola_dumerili
ENSXMAG00000004178	hfm1	100	82.893	ENSSLDG00000016386	hfm1	99	82.893	Seriola_lalandi_dorsalis
ENSXMAG00000004178	hfm1	100	83.218	ENSSPAG00000001023	hfm1	99	83.218	Stegastes_partitus
ENSXMAG00000004178	hfm1	92	67.473	ENSSSCG00000006912	HFM1	60	67.473	Sus_scrofa
ENSXMAG00000004178	hfm1	90	66.339	ENSTGUG00000006172	HFM1	85	66.339	Taeniopygia_guttata
ENSXMAG00000004178	hfm1	53	80.994	ENSTNIG00000006962	hfm1	95	80.994	Tetraodon_nigroviridis
ENSXMAG00000004178	hfm1	92	66.626	ENSTTRG00000013933	HFM1	58	66.626	Tursiops_truncatus
ENSXMAG00000004178	hfm1	93	63.938	ENSVPAG00000011331	HFM1	59	63.938	Vicugna_pacos
ENSXMAG00000004178	hfm1	89	67.669	ENSVVUG00000020760	HFM1	80	67.669	Vulpes_vulpes