EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004415 (Gene tree)
Gene ID: 102227008
Gene Symbol: rbm28
Alias: zgc:56258
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 16608 bases
Position: chr2:12273324-12289931
Accession: 102227008
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004428	RRM_1	PF00076.22	2.9e-61	1	4
ENSXMAP00000004428	RRM_1	PF00076.22	2.9e-61	2	4
ENSXMAP00000004428	RRM_1	PF00076.22	2.9e-61	3	4
ENSXMAP00000004428	RRM_1	PF00076.22	2.9e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004433	-	2499	XM_005802055	ENSXMAP00000004428	753 (aa)	XP_005802112	M3ZQD5

Gene Model

Click here to download ENSXMAG00000004415's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004415's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004415	rbm28	82	67.500	ENSG00000106344	RBM28	100	49.268	Homo_sapiens
ENSXMAG00000004415	rbm28	57	73.041	ENSAPOG00000015512	rbm28	58	72.584	Acanthochromis_polyacanthus
ENSXMAG00000004415	rbm28	97	58.242	ENSAMEG00000004776	RBM28	66	58.974	Ailuropoda_melanoleuca
ENSXMAG00000004415	rbm28	56	70.000	ENSACIG00000023153	rbm28	90	70.000	Amphilophus_citrinellus
ENSXMAG00000004415	rbm28	57	72.811	ENSAOCG00000000462	rbm28	58	72.360	Amphiprion_ocellaris
ENSXMAG00000004415	rbm28	57	72.581	ENSAPEG00000012996	rbm28	58	72.135	Amphiprion_percula
ENSXMAG00000004415	rbm28	59	64.421	ENSATEG00000001672	rbm28	61	64.151	Anabas_testudineus
ENSXMAG00000004415	rbm28	100	49.872	ENSANAG00000033922	RBM28	80	67.500	Aotus_nancymaae
ENSXMAG00000004415	rbm28	99	65.046	ENSACLG00000025024	rbm28	99	65.526	Astatotilapia_calliptera
ENSXMAG00000004415	rbm28	59	60.407	ENSAMXG00000000763	rbm28	99	59.955	Astyanax_mexicanus
ENSXMAG00000004415	rbm28	88	67.500	ENSBTAG00000017001	RBM28	79	67.500	Bos_taurus
ENSXMAG00000004415	rbm28	90	67.500	ENSCJAG00000017731	RBM28	79	67.500	Callithrix_jacchus
ENSXMAG00000004415	rbm28	98	50.598	ENSCAFG00000001667	RBM28	56	55.324	Canis_familiaris
ENSXMAG00000004415	rbm28	98	50.598	ENSCAFG00020021648	RBM28	56	55.324	Canis_lupus_dingo
ENSXMAG00000004415	rbm28	62	53.027	ENSCHIG00000014146	RBM28	58	53.761	Capra_hircus
ENSXMAG00000004415	rbm28	66	65.000	ENSTSYG00000002892	RBM28	78	65.000	Carlito_syrichta
ENSXMAG00000004415	rbm28	81	39.807	ENSCAPG00000013218	RBM28	81	50.360	Cavia_aperea
ENSXMAG00000004415	rbm28	100	49.935	ENSCPOG00000006253	RBM28	57	55.556	Cavia_porcellus
ENSXMAG00000004415	rbm28	66	67.500	ENSCCAG00000035105	RBM28	78	67.500	Cebus_capucinus
ENSXMAG00000004415	rbm28	82	67.500	ENSCATG00000040497	RBM28	79	67.500	Cercocebus_atys
ENSXMAG00000004415	rbm28	62	54.298	ENSCLAG00000003707	RBM28	60	54.788	Chinchilla_lanigera
ENSXMAG00000004415	rbm28	100	48.909	ENSCSAG00000010161	RBM28	57	54.072	Chlorocebus_sabaeus
ENSXMAG00000004415	rbm28	57	57.600	ENSCHOG00000001994	-	63	57.600	Choloepus_hoffmanni
ENSXMAG00000004415	rbm28	53	50.112	ENSCPBG00000018088	RBM28	81	52.289	Chrysemys_picta_bellii
ENSXMAG00000004415	rbm28	85	50.738	ENSCANG00000038397	RBM28	69	67.500	Colobus_angolensis_palliatus
ENSXMAG00000004415	rbm28	67	51.587	ENSCGRG00001021278	Rbm28	51	48.352	Cricetulus_griseus_chok1gshd
ENSXMAG00000004415	rbm28	67	51.587	ENSCGRG00000005098	Rbm28	56	55.632	Cricetulus_griseus_crigri
ENSXMAG00000004415	rbm28	99	60.630	ENSCSEG00000004212	rbm28	60	68.009	Cynoglossus_semilaevis
ENSXMAG00000004415	rbm28	59	81.920	ENSCVAG00000010493	rbm28	99	77.778	Cyprinodon_variegatus
ENSXMAG00000004415	rbm28	84	57.919	ENSDARG00000025332	rbm28	75	57.919	Danio_rerio
ENSXMAG00000004415	rbm28	98	49.223	ENSDNOG00000001124	RBM28	56	54.147	Dasypus_novemcinctus
ENSXMAG00000004415	rbm28	65	51.411	ENSDORG00000004184	Rbm28	86	54.139	Dipodomys_ordii
ENSXMAG00000004415	rbm28	98	45.906	ENSETEG00000007130	RBM28	53	50.243	Echinops_telfairi
ENSXMAG00000004415	rbm28	98	38.701	ENSEBUG00000004419	rbm28	58	43.499	Eptatretus_burgeri
ENSXMAG00000004415	rbm28	66	52.684	ENSEASG00005008528	RBM28	57	54.955	Equus_asinus_asinus
ENSXMAG00000004415	rbm28	66	51.881	ENSECAG00000007745	RBM28	57	54.402	Equus_caballus
ENSXMAG00000004415	rbm28	100	46.887	ENSEEUG00000002389	RBM28	84	60.101	Erinaceus_europaeus
ENSXMAG00000004415	rbm28	99	56.210	ENSELUG00000020602	rbm28	59	61.605	Esox_lucius
ENSXMAG00000004415	rbm28	100	50.859	ENSFCAG00000000946	RBM28	81	67.500	Felis_catus
ENSXMAG00000004415	rbm28	100	49.747	ENSFDAG00000010169	RBM28	58	55.134	Fukomys_damarensis
ENSXMAG00000004415	rbm28	99	53.217	ENSGMOG00000007091	rbm28	93	60.137	Gadus_morhua
ENSXMAG00000004415	rbm28	59	93.722	ENSGAFG00000004802	rbm28	98	93.722	Gambusia_affinis
ENSXMAG00000004415	rbm28	58	70.023	ENSGACG00000012612	rbm28	73	70.000	Gasterosteus_aculeatus
ENSXMAG00000004415	rbm28	82	53.769	ENSGAGG00000008873	RBM28	82	62.567	Gopherus_agassizii
ENSXMAG00000004415	rbm28	95	47.984	ENSGGOG00000004644	RBM28	59	54.484	Gorilla_gorilla
ENSXMAG00000004415	rbm28	94	65.742	ENSHBUG00000009611	rbm28	56	73.529	Haplochromis_burtoni
ENSXMAG00000004415	rbm28	100	49.935	ENSHGLG00000005409	RBM28	59	53.587	Heterocephalus_glaber_female
ENSXMAG00000004415	rbm28	100	49.935	ENSHGLG00100016458	RBM28	59	53.587	Heterocephalus_glaber_male
ENSXMAG00000004415	rbm28	83	57.143	ENSHCOG00000010597	rbm28	84	56.085	Hippocampus_comes
ENSXMAG00000004415	rbm28	57	48.485	ENSIPUG00000007103	rbm28	81	48.485	Ictalurus_punctatus
ENSXMAG00000004415	rbm28	98	49.805	ENSSTOG00000002169	RBM28	55	54.545	Ictidomys_tridecemlineatus
ENSXMAG00000004415	rbm28	56	53.521	ENSJJAG00000022400	Rbm28	59	53.756	Jaculus_jaculus
ENSXMAG00000004415	rbm28	59	72.809	ENSKMAG00000013348	rbm28	99	67.368	Kryptolebias_marmoratus
ENSXMAG00000004415	rbm28	59	69.507	ENSLBEG00000012998	rbm28	57	69.196	Labrus_bergylta
ENSXMAG00000004415	rbm28	98	58.763	ENSLOCG00000015541	rbm28	74	61.772	Lepisosteus_oculatus
ENSXMAG00000004415	rbm28	98	50.000	ENSLAFG00000010717	RBM28	56	55.220	Loxodonta_africana
ENSXMAG00000004415	rbm28	82	67.500	ENSMFAG00000031036	RBM28	79	67.500	Macaca_fascicularis
ENSXMAG00000004415	rbm28	82	67.500	ENSMMUG00000007250	RBM28	79	67.500	Macaca_mulatta
ENSXMAG00000004415	rbm28	100	48.969	ENSMNEG00000036970	RBM28	79	67.500	Macaca_nemestrina
ENSXMAG00000004415	rbm28	77	50.000	ENSMLEG00000037717	RBM28	55	52.846	Mandrillus_leucophaeus
ENSXMAG00000004415	rbm28	99	66.447	ENSMAMG00000008525	rbm28	99	66.316	Mastacembelus_armatus
ENSXMAG00000004415	rbm28	93	63.842	ENSMZEG00005019625	rbm28	99	64.356	Maylandia_zebra
ENSXMAG00000004415	rbm28	65	51.927	ENSMAUG00000002263	Rbm28	56	54.362	Mesocricetus_auratus
ENSXMAG00000004415	rbm28	64	52.130	ENSMICG00000000107	RBM28	59	55.835	Microcebus_murinus
ENSXMAG00000004415	rbm28	99	49.742	ENSMOCG00000014615	Rbm28	59	55.034	Microtus_ochrogaster
ENSXMAG00000004415	rbm28	58	65.525	ENSMMOG00000008600	rbm28	89	65.525	Mola_mola
ENSXMAG00000004415	rbm28	98	50.129	ENSMODG00000015151	RBM28	56	57.241	Monodelphis_domestica
ENSXMAG00000004415	rbm28	58	70.615	ENSMALG00000006419	rbm28	57	70.295	Monopterus_albus
ENSXMAG00000004415	rbm28	100	51.114	MGP_CAROLIEiJ_G0028162	Rbm28	58	54.831	Mus_caroli
ENSXMAG00000004415	rbm28	100	50.324	ENSMUSG00000029701	Rbm28	59	55.457	Mus_musculus
ENSXMAG00000004415	rbm28	100	50.452	MGP_PahariEiJ_G0021920	Rbm28	57	56.193	Mus_pahari
ENSXMAG00000004415	rbm28	100	50.648	MGP_SPRETEiJ_G0029162	Rbm28	59	55.011	Mus_spretus
ENSXMAG00000004415	rbm28	100	49.935	ENSMPUG00000006511	RBM28	58	54.484	Mustela_putorius_furo
ENSXMAG00000004415	rbm28	63	53.002	ENSMLUG00000002186	RBM28	56	54.734	Myotis_lucifugus
ENSXMAG00000004415	rbm28	99	48.761	ENSNGAG00000006480	-	58	53.288	Nannospalax_galili
ENSXMAG00000004415	rbm28	99	46.997	ENSNGAG00000017946	-	57	50.790	Nannospalax_galili
ENSXMAG00000004415	rbm28	70	67.500	ENSNLEG00000012307	RBM28	79	67.500	Nomascus_leucogenys
ENSXMAG00000004415	rbm28	81	58.228	ENSMEUG00000009611	RBM28	81	59.748	Notamacropus_eugenii
ENSXMAG00000004415	rbm28	90	46.345	ENSODEG00000013217	-	81	57.254	Octodon_degus
ENSXMAG00000004415	rbm28	100	47.650	ENSODEG00000003213	-	56	52.381	Octodon_degus
ENSXMAG00000004415	rbm28	59	73.051	ENSONIG00000014924	rbm28	58	73.333	Oreochromis_niloticus
ENSXMAG00000004415	rbm28	59	49.123	ENSOANG00000000815	-	57	49.660	Ornithorhynchus_anatinus
ENSXMAG00000004415	rbm28	62	54.393	ENSOCUG00000003009	RBM28	55	56.279	Oryctolagus_cuniculus
ENSXMAG00000004415	rbm28	99	64.660	ENSORLG00000009636	rbm28	58	70.880	Oryzias_latipes
ENSXMAG00000004415	rbm28	58	71.236	ENSORLG00020002123	rbm28	60	71.236	Oryzias_latipes_hni
ENSXMAG00000004415	rbm28	99	70.936	ENSORLG00015015030	rbm28	99	70.936	Oryzias_latipes_hsok
ENSXMAG00000004415	rbm28	58	72.912	ENSOMEG00000007801	rbm28	59	72.912	Oryzias_melastigma
ENSXMAG00000004415	rbm28	81	65.000	ENSOGAG00000006011	RBM28	79	65.000	Otolemur_garnettii
ENSXMAG00000004415	rbm28	100	49.487	ENSOARG00000002547	RBM28	58	53.761	Ovis_aries
ENSXMAG00000004415	rbm28	82	67.500	ENSPPAG00000041730	RBM28	79	67.500	Pan_paniscus
ENSXMAG00000004415	rbm28	98	50.262	ENSPPRG00000004420	RBM28	79	67.500	Panthera_pardus
ENSXMAG00000004415	rbm28	98	50.525	ENSPTIG00000008550	RBM28	79	67.500	Panthera_tigris_altaica
ENSXMAG00000004415	rbm28	82	67.500	ENSPTRG00000019659	RBM28	79	67.500	Pan_troglodytes
ENSXMAG00000004415	rbm28	82	67.500	ENSPANG00000022295	RBM28	79	67.500	Papio_anubis
ENSXMAG00000004415	rbm28	98	54.835	ENSPKIG00000023453	rbm28	60	57.447	Paramormyrops_kingsleyae
ENSXMAG00000004415	rbm28	84	65.707	ENSPMGG00000012840	rbm28	92	65.707	Periophthalmus_magnuspinnatus
ENSXMAG00000004415	rbm28	99	49.204	ENSPEMG00000020673	Rbm28	60	54.955	Peromyscus_maniculatus_bairdii
ENSXMAG00000004415	rbm28	98	51.064	ENSPCIG00000012810	RBM28	57	54.943	Phascolarctos_cinereus
ENSXMAG00000004415	rbm28	99	88.771	ENSPFOG00000018209	rbm28	59	92.634	Poecilia_formosa
ENSXMAG00000004415	rbm28	59	93.065	ENSPLAG00000016078	rbm28	57	93.065	Poecilia_latipinna
ENSXMAG00000004415	rbm28	99	88.654	ENSPMEG00000004292	rbm28	59	92.428	Poecilia_mexicana
ENSXMAG00000004415	rbm28	74	88.121	ENSPREG00000014287	rbm28	99	90.250	Poecilia_reticulata
ENSXMAG00000004415	rbm28	100	49.105	ENSPPYG00000017975	RBM28	57	54.260	Pongo_abelii
ENSXMAG00000004415	rbm28	73	53.073	ENSPCAG00000008223	RBM28	82	52.877	Procavia_capensis
ENSXMAG00000004415	rbm28	82	67.500	ENSPCOG00000016797	RBM28	78	67.500	Propithecus_coquereli
ENSXMAG00000004415	rbm28	71	61.751	ENSPVAG00000005443	RBM28	66	64.677	Pteropus_vampyrus
ENSXMAG00000004415	rbm28	99	64.915	ENSPNYG00000014003	rbm28	99	65.395	Pundamilia_nyererei
ENSXMAG00000004415	rbm28	100	50.856	ENSRNOG00000005468	Rbm28	86	56.621	Rattus_norvegicus
ENSXMAG00000004415	rbm28	82	67.500	ENSRBIG00000033990	RBM28	79	67.500	Rhinopithecus_bieti
ENSXMAG00000004415	rbm28	82	67.500	ENSRROG00000040747	RBM28	79	67.500	Rhinopithecus_roxellana
ENSXMAG00000004415	rbm28	85	47.927	ENSSBOG00000012308	RBM28	99	46.615	Saimiri_boliviensis_boliviensis
ENSXMAG00000004415	rbm28	96	49.730	ENSSHAG00000017017	RBM28	99	49.332	Sarcophilus_harrisii
ENSXMAG00000004415	rbm28	99	54.558	ENSSFOG00015001231	rbm28	58	60.690	Scleropages_formosus
ENSXMAG00000004415	rbm28	59	66.443	ENSSMAG00000003885	rbm28	90	66.444	Scophthalmus_maximus
ENSXMAG00000004415	rbm28	59	73.154	ENSSDUG00000014270	rbm28	87	72.829	Seriola_dumerili
ENSXMAG00000004415	rbm28	59	71.938	ENSSLDG00000020099	rbm28	58	71.938	Seriola_lalandi_dorsalis
ENSXMAG00000004415	rbm28	75	58.713	ENSSARG00000008303	RBM28	78	58.333	Sorex_araneus
ENSXMAG00000004415	rbm28	68	53.165	ENSSPUG00000000838	RBM28	81	52.242	Sphenodon_punctatus
ENSXMAG00000004415	rbm28	58	71.526	ENSSPAG00000023305	rbm28	61	71.812	Stegastes_partitus
ENSXMAG00000004415	rbm28	100	50.000	ENSSSCG00000031847	RBM28	58	55.088	Sus_scrofa
ENSXMAG00000004415	rbm28	59	65.495	ENSTRUG00000013311	rbm28	58	65.351	Takifugu_rubripes
ENSXMAG00000004415	rbm28	99	58.687	ENSTNIG00000017962	rbm28	59	67.778	Tetraodon_nigroviridis
ENSXMAG00000004415	rbm28	82	54.633	ENSTBEG00000012749	RBM28	81	54.321	Tupaia_belangeri
ENSXMAG00000004415	rbm28	100	49.558	ENSTTRG00000013647	RBM28	90	54.783	Tursiops_truncatus
ENSXMAG00000004415	rbm28	100	46.503	ENSUAMG00000006949	RBM28	60	49.552	Ursus_americanus
ENSXMAG00000004415	rbm28	100	48.408	ENSUMAG00000005997	RBM28	58	53.950	Ursus_maritimus
ENSXMAG00000004415	rbm28	88	45.331	ENSVPAG00000008304	RBM28	60	49.213	Vicugna_pacos
ENSXMAG00000004415	rbm28	98	50.665	ENSVVUG00000007270	RBM28	56	55.324	Vulpes_vulpes
ENSXMAG00000004415	rbm28	99	48.241	ENSXETG00000009271	rbm28	58	53.201	Xenopus_tropicalis
ENSXMAG00000004415	rbm28	64	87.835	ENSXCOG00000020357	rbm28	91	92.325	Xiphophorus_couchianus