EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004604 (Gene tree)
Gene ID: 102226189
Gene Symbol: polr3f
Alias: zgc:56299|zgc:76983
Full Name: RNA polymerase III subunit F
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 6026 bases
Position: chr5:298960-304985
Accession: 102226189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004627	RNA_pol_Rpc34	PF05158.12	1.1e-98	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004632	-	1904	XM_005814444	ENSXMAP00000004627	316 (aa)	XP_005814501	M3ZQY4

Gene Model

Click here to download ENSXMAG00000004604's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03020	RNA polymerase	KEGG
xma04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004604's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004604	polr3f	100	85.127	ENSG00000132664	POLR3F	100	85.127	Homo_sapiens
ENSXMAG00000004604	polr3f	100	95.570	ENSAPOG00000008271	polr3f	100	95.570	Acanthochromis_polyacanthus
ENSXMAG00000004604	polr3f	100	84.810	ENSAMEG00000005222	POLR3F	100	84.810	Ailuropoda_melanoleuca
ENSXMAG00000004604	polr3f	100	88.291	ENSACIG00000006705	polr3f	100	88.291	Amphilophus_citrinellus
ENSXMAG00000004604	polr3f	100	95.570	ENSAOCG00000000687	polr3f	100	95.570	Amphiprion_ocellaris
ENSXMAG00000004604	polr3f	100	95.253	ENSAPEG00000015263	polr3f	100	95.253	Amphiprion_percula
ENSXMAG00000004604	polr3f	87	95.273	ENSATEG00000015539	polr3f	100	95.273	Anabas_testudineus
ENSXMAG00000004604	polr3f	87	88.364	ENSAPLG00000005533	POLR3F	100	88.364	Anas_platyrhynchos
ENSXMAG00000004604	polr3f	97	84.740	ENSACAG00000014293	POLR3F	99	84.740	Anolis_carolinensis
ENSXMAG00000004604	polr3f	100	85.443	ENSANAG00000026726	POLR3F	100	85.443	Aotus_nancymaae
ENSXMAG00000004604	polr3f	100	95.253	ENSACLG00000003615	polr3f	100	95.253	Astatotilapia_calliptera
ENSXMAG00000004604	polr3f	100	90.506	ENSAMXG00000036020	polr3f	100	90.506	Astyanax_mexicanus
ENSXMAG00000004604	polr3f	100	84.494	ENSBTAG00000008825	POLR3F	100	84.494	Bos_taurus
ENSXMAG00000004604	polr3f	95	33.333	WBGene00021112	W09C3.4	95	33.333	Caenorhabditis_elegans
ENSXMAG00000004604	polr3f	100	85.443	ENSCJAG00000005159	POLR3F	100	85.443	Callithrix_jacchus
ENSXMAG00000004604	polr3f	100	84.494	ENSCAFG00000005420	POLR3F	100	84.494	Canis_familiaris
ENSXMAG00000004604	polr3f	100	84.494	ENSCAFG00020027500	POLR3F	100	84.494	Canis_lupus_dingo
ENSXMAG00000004604	polr3f	100	84.494	ENSCHIG00000014743	POLR3F	100	84.494	Capra_hircus
ENSXMAG00000004604	polr3f	100	84.494	ENSTSYG00000004207	POLR3F	100	84.494	Carlito_syrichta
ENSXMAG00000004604	polr3f	93	47.635	ENSCAPG00000008423	POLR3F	100	71.429	Cavia_aperea
ENSXMAG00000004604	polr3f	100	85.127	ENSCPOG00000002400	POLR3F	100	85.127	Cavia_porcellus
ENSXMAG00000004604	polr3f	100	75.633	ENSCCAG00000021800	POLR3F	100	75.633	Cebus_capucinus
ENSXMAG00000004604	polr3f	100	84.810	ENSCATG00000019507	POLR3F	100	84.810	Cercocebus_atys
ENSXMAG00000004604	polr3f	100	85.127	ENSCLAG00000016296	POLR3F	100	85.127	Chinchilla_lanigera
ENSXMAG00000004604	polr3f	100	84.810	ENSCSAG00000011513	POLR3F	100	84.810	Chlorocebus_sabaeus
ENSXMAG00000004604	polr3f	73	84.270	ENSCHOG00000013268	POLR3F	73	84.270	Choloepus_hoffmanni
ENSXMAG00000004604	polr3f	87	87.273	ENSCPBG00000023473	POLR3F	100	87.273	Chrysemys_picta_bellii
ENSXMAG00000004604	polr3f	99	57.595	ENSCING00000001212	-	99	57.595	Ciona_intestinalis
ENSXMAG00000004604	polr3f	71	58.222	ENSCSAVG00000003340	-	96	62.722	Ciona_savignyi
ENSXMAG00000004604	polr3f	92	84.880	ENSCANG00000037390	POLR3F	100	84.880	Colobus_angolensis_palliatus
ENSXMAG00000004604	polr3f	100	85.127	ENSCGRG00001002032	Polr3f	100	85.127	Cricetulus_griseus_chok1gshd
ENSXMAG00000004604	polr3f	100	85.127	ENSCGRG00000010852	Polr3f	100	85.127	Cricetulus_griseus_crigri
ENSXMAG00000004604	polr3f	100	91.139	ENSCSEG00000001247	polr3f	100	91.139	Cynoglossus_semilaevis
ENSXMAG00000004604	polr3f	100	96.519	ENSCVAG00000007611	polr3f	100	96.519	Cyprinodon_variegatus
ENSXMAG00000004604	polr3f	100	90.190	ENSDARG00000012572	polr3f	100	90.190	Danio_rerio
ENSXMAG00000004604	polr3f	100	82.278	ENSDNOG00000010719	POLR3F	100	82.278	Dasypus_novemcinctus
ENSXMAG00000004604	polr3f	100	85.443	ENSDORG00000016352	Polr3f	100	85.443	Dipodomys_ordii
ENSXMAG00000004604	polr3f	95	51.000	FBgn0038951	CG5380	99	51.000	Drosophila_melanogaster
ENSXMAG00000004604	polr3f	88	50.179	ENSETEG00000015485	-	99	50.179	Echinops_telfairi
ENSXMAG00000004604	polr3f	100	75.000	ENSEBUG00000006783	polr3f	100	75.000	Eptatretus_burgeri
ENSXMAG00000004604	polr3f	100	85.127	ENSEASG00005002022	POLR3F	100	85.127	Equus_asinus_asinus
ENSXMAG00000004604	polr3f	100	85.127	ENSECAG00000009920	POLR3F	100	85.127	Equus_caballus
ENSXMAG00000004604	polr3f	80	80.000	ENSEEUG00000000184	POLR3F	80	80.000	Erinaceus_europaeus
ENSXMAG00000004604	polr3f	100	89.873	ENSELUG00000001558	polr3f	100	89.873	Esox_lucius
ENSXMAG00000004604	polr3f	100	84.810	ENSFCAG00000013828	POLR3F	100	84.810	Felis_catus
ENSXMAG00000004604	polr3f	87	88.000	ENSFALG00000007623	POLR3F	100	88.000	Ficedula_albicollis
ENSXMAG00000004604	polr3f	100	84.494	ENSFDAG00000002528	POLR3F	100	84.494	Fukomys_damarensis
ENSXMAG00000004604	polr3f	100	95.886	ENSFHEG00000006450	polr3f	100	95.886	Fundulus_heteroclitus
ENSXMAG00000004604	polr3f	100	86.076	ENSGALG00000008749	POLR3F	100	86.076	Gallus_gallus
ENSXMAG00000004604	polr3f	100	99.051	ENSGAFG00000003698	polr3f	100	99.051	Gambusia_affinis
ENSXMAG00000004604	polr3f	100	85.759	ENSGAGG00000006151	POLR3F	100	85.759	Gopherus_agassizii
ENSXMAG00000004604	polr3f	100	85.127	ENSGGOG00000011543	POLR3F	100	85.127	Gorilla_gorilla
ENSXMAG00000004604	polr3f	100	95.253	ENSHBUG00000013806	polr3f	100	95.253	Haplochromis_burtoni
ENSXMAG00000004604	polr3f	100	84.494	ENSHGLG00000011867	POLR3F	100	84.494	Heterocephalus_glaber_female
ENSXMAG00000004604	polr3f	100	84.494	ENSHGLG00100012577	POLR3F	100	84.494	Heterocephalus_glaber_male
ENSXMAG00000004604	polr3f	100	82.278	ENSHCOG00000011751	polr3f	100	82.278	Hippocampus_comes
ENSXMAG00000004604	polr3f	100	90.506	ENSIPUG00000013347	polr3f	100	90.506	Ictalurus_punctatus
ENSXMAG00000004604	polr3f	100	84.810	ENSSTOG00000013588	POLR3F	100	84.810	Ictidomys_tridecemlineatus
ENSXMAG00000004604	polr3f	100	84.810	ENSJJAG00000017513	Polr3f	100	84.810	Jaculus_jaculus
ENSXMAG00000004604	polr3f	87	87.636	ENSKMAG00000016495	polr3f	100	87.636	Kryptolebias_marmoratus
ENSXMAG00000004604	polr3f	73	96.121	ENSLBEG00000011998	polr3f	100	96.121	Labrus_bergylta
ENSXMAG00000004604	polr3f	100	85.759	ENSLACG00000009371	POLR3F	100	85.759	Latimeria_chalumnae
ENSXMAG00000004604	polr3f	100	89.241	ENSLOCG00000015701	polr3f	100	89.241	Lepisosteus_oculatus
ENSXMAG00000004604	polr3f	100	84.494	ENSLAFG00000004929	POLR3F	100	84.494	Loxodonta_africana
ENSXMAG00000004604	polr3f	100	84.810	ENSMFAG00000002227	POLR3F	100	84.810	Macaca_fascicularis
ENSXMAG00000004604	polr3f	87	86.909	ENSMMUG00000004143	POLR3F	100	86.909	Macaca_mulatta
ENSXMAG00000004604	polr3f	100	84.810	ENSMNEG00000033404	POLR3F	100	84.810	Macaca_nemestrina
ENSXMAG00000004604	polr3f	100	84.810	ENSMLEG00000021905	POLR3F	100	84.810	Mandrillus_leucophaeus
ENSXMAG00000004604	polr3f	100	93.671	ENSMAMG00000017975	polr3f	100	93.671	Mastacembelus_armatus
ENSXMAG00000004604	polr3f	100	94.937	ENSMZEG00005015134	polr3f	100	94.937	Maylandia_zebra
ENSXMAG00000004604	polr3f	100	86.076	ENSMGAG00000006691	POLR3F	100	86.076	Meleagris_gallopavo
ENSXMAG00000004604	polr3f	100	84.810	ENSMAUG00000020176	Polr3f	100	84.810	Mesocricetus_auratus
ENSXMAG00000004604	polr3f	100	84.810	ENSMICG00000044519	POLR3F	100	84.810	Microcebus_murinus
ENSXMAG00000004604	polr3f	100	85.127	ENSMOCG00000018352	Polr3f	100	85.127	Microtus_ochrogaster
ENSXMAG00000004604	polr3f	93	92.929	ENSMMOG00000018477	polr3f	100	92.929	Mola_mola
ENSXMAG00000004604	polr3f	100	84.810	ENSMODG00000005624	POLR3F	100	84.810	Monodelphis_domestica
ENSXMAG00000004604	polr3f	100	94.304	ENSMALG00000006685	polr3f	100	94.304	Monopterus_albus
ENSXMAG00000004604	polr3f	100	84.810	MGP_CAROLIEiJ_G0024385	Polr3f	100	84.810	Mus_caroli
ENSXMAG00000004604	polr3f	100	84.810	ENSMUSG00000027427	Polr3f	100	84.810	Mus_musculus
ENSXMAG00000004604	polr3f	100	84.810	MGP_PahariEiJ_G0025829	Polr3f	100	84.810	Mus_pahari
ENSXMAG00000004604	polr3f	100	84.810	MGP_SPRETEiJ_G0025304	Polr3f	100	84.810	Mus_spretus
ENSXMAG00000004604	polr3f	100	64.308	ENSMPUG00000001252	-	100	64.308	Mustela_putorius_furo
ENSXMAG00000004604	polr3f	100	84.810	ENSMLUG00000014844	POLR3F	100	84.810	Myotis_lucifugus
ENSXMAG00000004604	polr3f	100	84.494	ENSNGAG00000010898	Polr3f	100	84.494	Nannospalax_galili
ENSXMAG00000004604	polr3f	100	94.937	ENSNBRG00000020796	polr3f	100	94.937	Neolamprologus_brichardi
ENSXMAG00000004604	polr3f	100	85.127	ENSNLEG00000009778	POLR3F	100	85.127	Nomascus_leucogenys
ENSXMAG00000004604	polr3f	93	80.339	ENSMEUG00000010320	POLR3F	100	80.339	Notamacropus_eugenii
ENSXMAG00000004604	polr3f	100	84.177	ENSOPRG00000003385	POLR3F	100	84.177	Ochotona_princeps
ENSXMAG00000004604	polr3f	100	84.810	ENSODEG00000011521	POLR3F	100	84.810	Octodon_degus
ENSXMAG00000004604	polr3f	100	94.304	ENSONIG00000006858	polr3f	100	94.304	Oreochromis_niloticus
ENSXMAG00000004604	polr3f	100	84.810	ENSOANG00000001253	POLR3F	100	84.810	Ornithorhynchus_anatinus
ENSXMAG00000004604	polr3f	100	85.127	ENSOCUG00000015067	POLR3F	100	85.127	Oryctolagus_cuniculus
ENSXMAG00000004604	polr3f	100	92.722	ENSORLG00000022412	polr3f	100	92.722	Oryzias_latipes
ENSXMAG00000004604	polr3f	100	92.722	ENSORLG00020021944	polr3f	100	92.722	Oryzias_latipes_hni
ENSXMAG00000004604	polr3f	100	83.228	ENSOGAG00000002916	POLR3F	100	83.228	Otolemur_garnettii
ENSXMAG00000004604	polr3f	100	84.494	ENSOARG00000000315	-	100	84.494	Ovis_aries
ENSXMAG00000004604	polr3f	100	50.633	ENSOARG00000008647	-	100	50.000	Ovis_aries
ENSXMAG00000004604	polr3f	100	85.127	ENSPPAG00000036681	POLR3F	100	85.127	Pan_paniscus
ENSXMAG00000004604	polr3f	100	84.810	ENSPPRG00000024604	POLR3F	100	84.810	Panthera_pardus
ENSXMAG00000004604	polr3f	100	84.810	ENSPTIG00000020292	POLR3F	100	84.810	Panthera_tigris_altaica
ENSXMAG00000004604	polr3f	100	85.127	ENSPTRG00000013287	POLR3F	100	85.127	Pan_troglodytes
ENSXMAG00000004604	polr3f	100	84.810	ENSPANG00000025015	POLR3F	100	84.810	Papio_anubis
ENSXMAG00000004604	polr3f	100	88.924	ENSPKIG00000004427	polr3f	100	88.924	Paramormyrops_kingsleyae
ENSXMAG00000004604	polr3f	87	88.727	ENSPSIG00000016613	POLR3F	100	88.727	Pelodiscus_sinensis
ENSXMAG00000004604	polr3f	100	57.911	ENSPMGG00000018350	polr3f	100	61.392	Periophthalmus_magnuspinnatus
ENSXMAG00000004604	polr3f	100	85.443	ENSPEMG00000006966	Polr3f	100	85.443	Peromyscus_maniculatus_bairdii
ENSXMAG00000004604	polr3f	100	76.582	ENSPMAG00000005530	polr3f	100	76.582	Petromyzon_marinus
ENSXMAG00000004604	polr3f	100	84.494	ENSPCIG00000000908	POLR3F	85	84.494	Phascolarctos_cinereus
ENSXMAG00000004604	polr3f	100	99.684	ENSPFOG00000018334	polr3f	100	99.684	Poecilia_formosa
ENSXMAG00000004604	polr3f	100	99.684	ENSPLAG00000021803	polr3f	100	99.684	Poecilia_latipinna
ENSXMAG00000004604	polr3f	100	99.684	ENSPMEG00000013150	polr3f	100	99.684	Poecilia_mexicana
ENSXMAG00000004604	polr3f	100	99.684	ENSPREG00000005278	polr3f	100	99.684	Poecilia_reticulata
ENSXMAG00000004604	polr3f	100	85.127	ENSPPYG00000010737	POLR3F	100	85.127	Pongo_abelii
ENSXMAG00000004604	polr3f	66	87.162	ENSPCAG00000004893	POLR3F	70	87.162	Procavia_capensis
ENSXMAG00000004604	polr3f	100	84.810	ENSPCOG00000004543	POLR3F	100	84.810	Propithecus_coquereli
ENSXMAG00000004604	polr3f	100	84.494	ENSPVAG00000000403	POLR3F	100	84.494	Pteropus_vampyrus
ENSXMAG00000004604	polr3f	100	95.253	ENSPNYG00000016276	polr3f	100	95.253	Pundamilia_nyererei
ENSXMAG00000004604	polr3f	100	90.823	ENSPNAG00000005164	polr3f	100	90.823	Pygocentrus_nattereri
ENSXMAG00000004604	polr3f	100	84.810	ENSRNOG00000007548	Polr3f	85	84.810	Rattus_norvegicus
ENSXMAG00000004604	polr3f	100	84.810	ENSRBIG00000021268	POLR3F	100	84.810	Rhinopithecus_bieti
ENSXMAG00000004604	polr3f	100	84.810	ENSRROG00000039911	POLR3F	100	84.810	Rhinopithecus_roxellana
ENSXMAG00000004604	polr3f	100	85.443	ENSSBOG00000018207	POLR3F	100	85.443	Saimiri_boliviensis_boliviensis
ENSXMAG00000004604	polr3f	100	67.508	ENSSHAG00000018160	POLR3F	100	66.978	Sarcophilus_harrisii
ENSXMAG00000004604	polr3f	100	89.241	ENSSFOG00015022433	polr3f	100	89.241	Scleropages_formosus
ENSXMAG00000004604	polr3f	100	92.089	ENSSMAG00000021029	polr3f	100	92.089	Scophthalmus_maximus
ENSXMAG00000004604	polr3f	100	83.228	ENSSDUG00000022435	polr3f	100	83.228	Seriola_dumerili
ENSXMAG00000004604	polr3f	100	93.671	ENSSLDG00000012761	polr3f	100	93.671	Seriola_lalandi_dorsalis
ENSXMAG00000004604	polr3f	100	75.633	ENSSARG00000006039	POLR3F	100	75.633	Sorex_araneus
ENSXMAG00000004604	polr3f	100	85.127	ENSSPUG00000001873	POLR3F	100	85.127	Sphenodon_punctatus
ENSXMAG00000004604	polr3f	100	87.975	ENSSPAG00000002092	polr3f	100	87.975	Stegastes_partitus
ENSXMAG00000004604	polr3f	100	84.494	ENSSSCG00000007095	POLR3F	100	89.655	Sus_scrofa
ENSXMAG00000004604	polr3f	100	85.759	ENSTGUG00000005839	POLR3F	100	85.759	Taeniopygia_guttata
ENSXMAG00000004604	polr3f	100	91.456	ENSTRUG00000012101	polr3f	100	91.456	Takifugu_rubripes
ENSXMAG00000004604	polr3f	100	90.823	ENSTNIG00000006456	polr3f	100	90.823	Tetraodon_nigroviridis
ENSXMAG00000004604	polr3f	100	68.987	ENSTBEG00000007921	POLR3F	100	68.987	Tupaia_belangeri
ENSXMAG00000004604	polr3f	100	84.494	ENSTTRG00000002580	POLR3F	100	84.494	Tursiops_truncatus
ENSXMAG00000004604	polr3f	53	86.145	ENSUAMG00000024166	POLR3F	100	86.145	Ursus_americanus
ENSXMAG00000004604	polr3f	100	84.494	ENSUMAG00000024944	POLR3F	100	84.494	Ursus_maritimus
ENSXMAG00000004604	polr3f	100	83.861	ENSVPAG00000009063	POLR3F	100	83.861	Vicugna_pacos
ENSXMAG00000004604	polr3f	100	84.494	ENSVVUG00000012925	POLR3F	100	84.494	Vulpes_vulpes
ENSXMAG00000004604	polr3f	100	85.443	ENSXETG00000024898	polr3f	100	85.443	Xenopus_tropicalis
ENSXMAG00000004604	polr3f	87	100.000	ENSXCOG00000010301	polr3f	100	100.000	Xiphophorus_couchianus