EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004625 (Gene tree)
Gene ID: 102231100
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 20006 bases
Position: chr16:12545315-12565320
Accession: 102231100
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004633	MMR_HSR1	PF01926.23	2.1e-08	1	1
ENSXMAP00000022545	MMR_HSR1	PF01926.23	2.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004638	-	4288	XM_023349614	ENSXMAP00000004633	505 (aa)	XP_023205382	M3ZQZ0
ENSXMAT00000033978	-	4252	XM_023349615	ENSXMAP00000022545	493 (aa)	XP_023205383	-

Gene Model

Click here to download ENSXMAG00000004625's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004625's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004625	srl	90	82.697	ENSG00000185739	SRL	99	83.488	Homo_sapiens
ENSXMAG00000004625	srl	90	77.427	ENSAPOG00000012432	SRL	99	77.427	Acanthochromis_polyacanthus
ENSXMAG00000004625	srl	95	94.904	ENSAPOG00000018093	srl	100	94.904	Acanthochromis_polyacanthus
ENSXMAG00000004625	srl	92	81.223	ENSAMEG00000010862	SRL	51	81.858	Ailuropoda_melanoleuca
ENSXMAG00000004625	srl	91	75.893	ENSACIG00000015419	SRL	99	75.893	Amphilophus_citrinellus
ENSXMAG00000004625	srl	91	95.111	ENSACIG00000015799	srl	99	95.111	Amphilophus_citrinellus
ENSXMAG00000004625	srl	88	95.853	ENSAOCG00000007574	srl	100	95.853	Amphiprion_ocellaris
ENSXMAG00000004625	srl	93	75.870	ENSAOCG00000017049	SRL	97	77.928	Amphiprion_ocellaris
ENSXMAG00000004625	srl	95	95.238	ENSAPEG00000006911	srl	100	95.238	Amphiprion_percula
ENSXMAG00000004625	srl	93	72.113	ENSAPEG00000006533	SRL	96	75.000	Amphiprion_percula
ENSXMAG00000004625	srl	95	95.031	ENSATEG00000024315	srl	100	95.031	Anabas_testudineus
ENSXMAG00000004625	srl	92	75.855	ENSATEG00000009643	SRL	57	73.038	Anabas_testudineus
ENSXMAG00000004625	srl	96	79.878	ENSACAG00000016380	SRL	90	80.894	Anolis_carolinensis
ENSXMAG00000004625	srl	91	74.730	ENSACLG00000024674	SRL	58	74.730	Astatotilapia_calliptera
ENSXMAG00000004625	srl	95	94.824	ENSACLG00000027685	srl	100	94.824	Astatotilapia_calliptera
ENSXMAG00000004625	srl	85	78.810	ENSAMXG00000038693	SRL	100	74.834	Astyanax_mexicanus
ENSXMAG00000004625	srl	100	88.515	ENSAMXG00000018789	srl	97	88.515	Astyanax_mexicanus
ENSXMAG00000004625	srl	92	82.561	ENSBTAG00000001078	SRL	57	82.561	Bos_taurus
ENSXMAG00000004625	srl	90	83.258	ENSCJAG00000019750	SRL	100	80.127	Callithrix_jacchus
ENSXMAG00000004625	srl	93	81.264	ENSCAFG00000019233	SRL	85	81.223	Canis_familiaris
ENSXMAG00000004625	srl	91	81.898	ENSCAFG00020025024	SRL	56	81.898	Canis_lupus_dingo
ENSXMAG00000004625	srl	93	82.096	ENSCHIG00000017927	SRL	57	82.561	Capra_hircus
ENSXMAG00000004625	srl	95	80.127	ENSTSYG00000007919	SRL	99	84.186	Carlito_syrichta
ENSXMAG00000004625	srl	92	81.938	ENSCPOG00000012643	SRL	100	80.297	Cavia_porcellus
ENSXMAG00000004625	srl	90	77.828	ENSCCAG00000032646	SRL	100	84.697	Cebus_capucinus
ENSXMAG00000004625	srl	93	80.786	ENSCATG00000032227	-	100	80.127	Cercocebus_atys
ENSXMAG00000004625	srl	92	81.718	ENSCLAG00000016242	SRL	100	80.085	Chinchilla_lanigera
ENSXMAG00000004625	srl	78	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSXMAG00000004625	srl	90	86.269	ENSCPBG00000026371	SRL	99	80.745	Chrysemys_picta_bellii
ENSXMAG00000004625	srl	85	59.813	ENSCING00000005231	-	93	60.432	Ciona_intestinalis
ENSXMAG00000004625	srl	90	82.697	ENSCANG00000035872	SRL	99	83.488	Colobus_angolensis_palliatus
ENSXMAG00000004625	srl	92	82.379	ENSCGRG00001016630	Srl	100	80.720	Cricetulus_griseus_chok1gshd
ENSXMAG00000004625	srl	92	82.379	ENSCGRG00000005458	Srl	100	80.720	Cricetulus_griseus_crigri
ENSXMAG00000004625	srl	96	72.363	ENSCSEG00000011866	SRL	95	71.941	Cynoglossus_semilaevis
ENSXMAG00000004625	srl	95	93.830	ENSCSEG00000016151	srl	100	93.830	Cynoglossus_semilaevis
ENSXMAG00000004625	srl	95	97.095	ENSCVAG00000003513	srl	100	97.095	Cyprinodon_variegatus
ENSXMAG00000004625	srl	93	75.427	ENSCVAG00000022465	SRL	61	76.356	Cyprinodon_variegatus
ENSXMAG00000004625	srl	95	90.476	ENSDARG00000104587	srl	100	90.476	Danio_rerio
ENSXMAG00000004625	srl	77	78.385	ENSDARG00000112959	CABZ01072309.1	100	78.385	Danio_rerio
ENSXMAG00000004625	srl	90	82.921	ENSDNOG00000011643	SRL	54	81.938	Dasypus_novemcinctus
ENSXMAG00000004625	srl	92	82.379	ENSDORG00000014807	Srl	100	80.508	Dipodomys_ordii
ENSXMAG00000004625	srl	75	65.775	ENSEBUG00000015937	srl	94	65.775	Eptatretus_burgeri
ENSXMAG00000004625	srl	90	83.108	ENSEASG00005000942	SRL	55	82.119	Equus_asinus_asinus
ENSXMAG00000004625	srl	95	80.297	ENSECAG00000024219	SRL	99	80.297	Equus_caballus
ENSXMAG00000004625	srl	95	86.858	ENSELUG00000015616	srl	100	86.858	Esox_lucius
ENSXMAG00000004625	srl	95	79.493	ENSFCAG00000022075	SRL	100	79.704	Felis_catus
ENSXMAG00000004625	srl	89	83.864	ENSFALG00000004328	SRL	63	83.864	Ficedula_albicollis
ENSXMAG00000004625	srl	92	82.198	ENSFDAG00000006199	SRL	100	80.932	Fukomys_damarensis
ENSXMAG00000004625	srl	95	97.303	ENSFHEG00000011239	srl	100	97.303	Fundulus_heteroclitus
ENSXMAG00000004625	srl	95	74.174	ENSFHEG00000011854	SRL	99	77.703	Fundulus_heteroclitus
ENSXMAG00000004625	srl	90	91.189	ENSGMOG00000014954	srl	100	91.189	Gadus_morhua
ENSXMAG00000004625	srl	94	81.641	ENSGALG00000038884	SRL	99	80.892	Gallus_gallus
ENSXMAG00000004625	srl	95	99.170	ENSGAFG00000000010	srl	100	99.170	Gambusia_affinis
ENSXMAG00000004625	srl	91	78.571	ENSGAFG00000016984	SRL	99	78.571	Gambusia_affinis
ENSXMAG00000004625	srl	90	94.286	ENSGACG00000011332	srl	100	94.286	Gasterosteus_aculeatus
ENSXMAG00000004625	srl	93	80.786	ENSGGOG00000011312	-	100	80.127	Gorilla_gorilla
ENSXMAG00000004625	srl	92	74.839	ENSHBUG00000015710	SRL	58	74.839	Haplochromis_burtoni
ENSXMAG00000004625	srl	95	94.824	ENSHBUG00000007581	srl	100	94.824	Haplochromis_burtoni
ENSXMAG00000004625	srl	92	82.159	ENSHGLG00000015271	SRL	100	80.508	Heterocephalus_glaber_female
ENSXMAG00000004625	srl	92	82.159	ENSHGLG00100019378	SRL	100	80.508	Heterocephalus_glaber_male
ENSXMAG00000004625	srl	97	93.542	ENSHCOG00000008687	srl	99	95.536	Hippocampus_comes
ENSXMAG00000004625	srl	90	75.385	ENSHCOG00000001012	SRL	50	75.385	Hippocampus_comes
ENSXMAG00000004625	srl	95	90.269	ENSIPUG00000012513	srl	100	90.269	Ictalurus_punctatus
ENSXMAG00000004625	srl	88	71.101	ENSIPUG00000011609	SRL	95	71.101	Ictalurus_punctatus
ENSXMAG00000004625	srl	92	82.743	ENSSTOG00000021151	-	100	80.508	Ictidomys_tridecemlineatus
ENSXMAG00000004625	srl	95	81.144	ENSJJAG00000016400	Srl	100	81.144	Jaculus_jaculus
ENSXMAG00000004625	srl	93	95.551	ENSKMAG00000014115	srl	95	95.551	Kryptolebias_marmoratus
ENSXMAG00000004625	srl	89	77.324	ENSKMAG00000019537	SRL	100	77.324	Kryptolebias_marmoratus
ENSXMAG00000004625	srl	95	94.055	ENSLBEG00000026643	srl	100	94.055	Labrus_bergylta
ENSXMAG00000004625	srl	89	76.471	ENSLBEG00000013811	SRL	95	76.697	Labrus_bergylta
ENSXMAG00000004625	srl	95	82.402	ENSLACG00000002825	SRL	99	83.814	Latimeria_chalumnae
ENSXMAG00000004625	srl	95	87.152	ENSLOCG00000002644	srl	94	90.068	Lepisosteus_oculatus
ENSXMAG00000004625	srl	90	83.032	ENSLAFG00000006329	SRL	50	83.032	Loxodonta_africana
ENSXMAG00000004625	srl	87	83.488	ENSMFAG00000037383	SRL	99	83.488	Macaca_fascicularis
ENSXMAG00000004625	srl	93	81.223	ENSMNEG00000019236	-	94	82.697	Macaca_nemestrina
ENSXMAG00000004625	srl	90	75.730	ENSMLEG00000032156	SRL	100	73.573	Mandrillus_leucophaeus
ENSXMAG00000004625	srl	89	75.991	ENSMAMG00000013756	SRL	53	75.991	Mastacembelus_armatus
ENSXMAG00000004625	srl	95	92.077	ENSMAMG00000023322	srl	96	94.912	Mastacembelus_armatus
ENSXMAG00000004625	srl	95	94.824	ENSMZEG00005004548	srl	100	94.824	Maylandia_zebra
ENSXMAG00000004625	srl	92	74.624	ENSMZEG00005004010	SRL	58	74.624	Maylandia_zebra
ENSXMAG00000004625	srl	92	82.119	ENSMGAG00000009342	SRL	96	84.697	Meleagris_gallopavo
ENSXMAG00000004625	srl	92	81.938	ENSMICG00000032307	SRL	100	80.338	Microcebus_murinus
ENSXMAG00000004625	srl	95	79.873	ENSMOCG00000008208	Srl	100	79.873	Microtus_ochrogaster
ENSXMAG00000004625	srl	90	74.891	ENSMMOG00000021572	SRL	99	74.945	Mola_mola
ENSXMAG00000004625	srl	91	93.333	ENSMMOG00000013970	srl	100	93.333	Mola_mola
ENSXMAG00000004625	srl	90	84.009	ENSMODG00000016380	-	50	84.009	Monodelphis_domestica
ENSXMAG00000004625	srl	85	77.804	ENSMALG00000000670	SRL	98	77.804	Monopterus_albus
ENSXMAG00000004625	srl	95	93.617	ENSMALG00000005039	srl	100	93.617	Monopterus_albus
ENSXMAG00000004625	srl	92	83.040	MGP_CAROLIEiJ_G0020400	Srl	100	81.780	Mus_caroli
ENSXMAG00000004625	srl	92	83.040	ENSMUSG00000022519	Srl	100	81.780	Mus_musculus
ENSXMAG00000004625	srl	92	83.040	MGP_SPRETEiJ_G0021294	Srl	100	81.780	Mus_spretus
ENSXMAG00000004625	srl	90	82.472	ENSMPUG00000015025	SRL	54	82.472	Mustela_putorius_furo
ENSXMAG00000004625	srl	90	83.371	ENSMLUG00000030733	SRL	56	83.371	Myotis_lucifugus
ENSXMAG00000004625	srl	92	82.819	ENSNGAG00000019741	Srl	100	81.144	Nannospalax_galili
ENSXMAG00000004625	srl	95	94.904	ENSNBRG00000023775	srl	100	94.904	Neolamprologus_brichardi
ENSXMAG00000004625	srl	92	73.978	ENSNBRG00000002422	SRL	56	76.389	Neolamprologus_brichardi
ENSXMAG00000004625	srl	90	77.079	ENSNLEG00000029051	SRL	100	74.630	Nomascus_leucogenys
ENSXMAG00000004625	srl	92	76.211	ENSOPRG00000000477	-	53	76.211	Ochotona_princeps
ENSXMAG00000004625	srl	92	82.159	ENSODEG00000013256	SRL	100	80.297	Octodon_degus
ENSXMAG00000004625	srl	95	94.824	ENSONIG00000005192	srl	100	94.824	Oreochromis_niloticus
ENSXMAG00000004625	srl	92	81.400	ENSOCUG00000025140	SRL	50	81.400	Oryctolagus_cuniculus
ENSXMAG00000004625	srl	99	94.578	ENSORLG00000008291	srl	100	96.907	Oryzias_latipes
ENSXMAG00000004625	srl	90	75.621	ENSORLG00000015064	SRL	97	75.621	Oryzias_latipes
ENSXMAG00000004625	srl	100	94.455	ENSORLG00020019784	srl	88	96.907	Oryzias_latipes_hni
ENSXMAG00000004625	srl	90	75.847	ENSORLG00020018173	SRL	97	75.847	Oryzias_latipes_hni
ENSXMAG00000004625	srl	90	75.847	ENSORLG00015019063	SRL	97	75.847	Oryzias_latipes_hsok
ENSXMAG00000004625	srl	99	94.578	ENSORLG00015009342	srl	100	94.578	Oryzias_latipes_hsok
ENSXMAG00000004625	srl	92	73.176	ENSOMEG00000005682	SRL	53	74.617	Oryzias_melastigma
ENSXMAG00000004625	srl	95	95.436	ENSOMEG00000010006	srl	100	95.436	Oryzias_melastigma
ENSXMAG00000004625	srl	92	81.718	ENSOGAG00000029266	SRL	55	81.718	Otolemur_garnettii
ENSXMAG00000004625	srl	93	82.096	ENSOARG00000003074	SRL	56	83.559	Ovis_aries
ENSXMAG00000004625	srl	93	80.786	ENSPPAG00000024919	-	99	83.488	Pan_paniscus
ENSXMAG00000004625	srl	95	79.493	ENSPPRG00000010274	SRL	99	83.256	Panthera_pardus
ENSXMAG00000004625	srl	95	79.493	ENSPTIG00000015162	SRL	99	83.256	Panthera_tigris_altaica
ENSXMAG00000004625	srl	93	80.786	ENSPTRG00000007712	SRL	99	83.488	Pan_troglodytes
ENSXMAG00000004625	srl	92	81.441	ENSPANG00000013804	SRL	98	81.538	Papio_anubis
ENSXMAG00000004625	srl	99	76.687	ENSPKIG00000024974	SRL	97	76.687	Paramormyrops_kingsleyae
ENSXMAG00000004625	srl	95	89.506	ENSPKIG00000006405	srl	100	89.506	Paramormyrops_kingsleyae
ENSXMAG00000004625	srl	92	82.561	ENSPSIG00000008586	SRL	50	82.561	Pelodiscus_sinensis
ENSXMAG00000004625	srl	90	76.018	ENSPMGG00000023505	-	99	76.018	Periophthalmus_magnuspinnatus
ENSXMAG00000004625	srl	90	95.475	ENSPMGG00000021081	srl	95	95.475	Periophthalmus_magnuspinnatus
ENSXMAG00000004625	srl	92	81.938	ENSPEMG00000015842	Srl	100	80.508	Peromyscus_maniculatus_bairdii
ENSXMAG00000004625	srl	86	67.963	ENSPMAG00000004786	srl	99	67.963	Petromyzon_marinus
ENSXMAG00000004625	srl	90	83.559	ENSPCIG00000012128	SRL	97	83.559	Phascolarctos_cinereus
ENSXMAG00000004625	srl	100	99.208	ENSPFOG00000011408	srl	100	99.208	Poecilia_formosa
ENSXMAG00000004625	srl	91	77.009	ENSPLAG00000002932	SRL	99	77.009	Poecilia_latipinna
ENSXMAG00000004625	srl	93	98.035	ENSPLAG00000008017	srl	99	98.035	Poecilia_latipinna
ENSXMAG00000004625	srl	100	99.189	ENSPMEG00000006745	srl	100	99.189	Poecilia_mexicana
ENSXMAG00000004625	srl	92	75.427	ENSPMEG00000005890	SRL	61	75.162	Poecilia_mexicana
ENSXMAG00000004625	srl	100	99.208	ENSPREG00000007751	srl	100	99.335	Poecilia_reticulata
ENSXMAG00000004625	srl	91	77.902	ENSPREG00000000315	SRL	99	77.902	Poecilia_reticulata
ENSXMAG00000004625	srl	85	84.964	ENSPPYG00000007053	SRL	98	84.964	Pongo_abelii
ENSXMAG00000004625	srl	89	84.127	ENSPCAG00000003378	-	50	84.127	Procavia_capensis
ENSXMAG00000004625	srl	92	82.159	ENSPCOG00000023135	SRL	99	84.186	Propithecus_coquereli
ENSXMAG00000004625	srl	92	81.481	ENSPVAG00000006586	SRL	56	81.481	Pteropus_vampyrus
ENSXMAG00000004625	srl	95	94.617	ENSPNYG00000001200	srl	100	94.617	Pundamilia_nyererei
ENSXMAG00000004625	srl	92	74.624	ENSPNYG00000003423	SRL	58	74.624	Pundamilia_nyererei
ENSXMAG00000004625	srl	95	89.212	ENSPNAG00000023106	srl	100	89.212	Pygocentrus_nattereri
ENSXMAG00000004625	srl	89	76.644	ENSPNAG00000007361	-	91	76.644	Pygocentrus_nattereri
ENSXMAG00000004625	srl	93	81.659	ENSRNOG00000005269	Srl	50	82.379	Rattus_norvegicus
ENSXMAG00000004625	srl	90	83.258	ENSSBOG00000029273	SRL	100	80.127	Saimiri_boliviensis_boliviensis
ENSXMAG00000004625	srl	90	83.784	ENSSHAG00000011715	-	50	83.784	Sarcophilus_harrisii
ENSXMAG00000004625	srl	95	88.843	ENSSFOG00015009773	srl	100	89.072	Scleropages_formosus
ENSXMAG00000004625	srl	90	77.928	ENSSFOG00015021327	SRL	50	77.679	Scleropages_formosus
ENSXMAG00000004625	srl	95	93.418	ENSSMAG00000016274	srl	100	93.631	Scophthalmus_maximus
ENSXMAG00000004625	srl	89	75.385	ENSSMAG00000002232	SRL	50	75.385	Scophthalmus_maximus
ENSXMAG00000004625	srl	90	96.396	ENSSDUG00000010808	srl	98	96.396	Seriola_dumerili
ENSXMAG00000004625	srl	90	77.556	ENSSDUG00000009161	SRL	99	77.556	Seriola_dumerili
ENSXMAG00000004625	srl	95	95.021	ENSSLDG00000022024	srl	100	95.021	Seriola_lalandi_dorsalis
ENSXMAG00000004625	srl	90	77.293	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSXMAG00000004625	srl	91	82.522	ENSSPUG00000016859	SRL	99	82.522	Sphenodon_punctatus
ENSXMAG00000004625	srl	95	94.835	ENSSPAG00000019105	srl	100	94.835	Stegastes_partitus
ENSXMAG00000004625	srl	89	79.138	ENSSPAG00000014254	SRL	98	79.138	Stegastes_partitus
ENSXMAG00000004625	srl	92	81.898	ENSSSCG00000007949	SRL	99	82.883	Sus_scrofa
ENSXMAG00000004625	srl	89	84.091	ENSTGUG00000003951	-	97	84.091	Taeniopygia_guttata
ENSXMAG00000004625	srl	73	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSXMAG00000004625	srl	95	94.255	ENSTRUG00000006005	srl	100	94.255	Takifugu_rubripes
ENSXMAG00000004625	srl	85	78.043	ENSTRUG00000013310	SRL	55	77.857	Takifugu_rubripes
ENSXMAG00000004625	srl	95	93.404	ENSTNIG00000009739	srl	100	93.404	Tetraodon_nigroviridis
ENSXMAG00000004625	srl	91	81.858	ENSUAMG00000005701	SRL	56	81.858	Ursus_americanus
ENSXMAG00000004625	srl	91	81.858	ENSUMAG00000002574	SRL	56	81.858	Ursus_maritimus
ENSXMAG00000004625	srl	91	81.898	ENSVVUG00000016331	-	50	81.898	Vulpes_vulpes
ENSXMAG00000004625	srl	95	80.300	ENSXETG00000017313	srl	99	82.472	Xenopus_tropicalis
ENSXMAG00000004625	srl	91	78.049	ENSXCOG00000014584	SRL	100	78.049	Xiphophorus_couchianus
ENSXMAG00000004625	srl	85	99.525	ENSXCOG00000010424	srl	97	99.525	Xiphophorus_couchianus
ENSXMAG00000004625	srl	92	75.641	ENSXMAG00000027598	SRL	63	75.810	Xiphophorus_maculatus