EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004638 (Gene tree)
Gene ID: 102223621
Gene Symbol: pdcd11
Alias: cb680|im:7148359|sb:cb680|wu:fc68c10
Full Name: programmed cell death 11
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 13941 bases
Position: chr5:20847036-20860976
Accession: 102223621
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004656	Suf	PF05843.14	4.7e-09	1	1
ENSXMAP00000004656	S1	PF00575.23	2.3e-56	1	4
ENSXMAP00000004656	S1	PF00575.23	2.3e-56	2	4
ENSXMAP00000004656	S1	PF00575.23	2.3e-56	3	4
ENSXMAP00000004656	S1	PF00575.23	2.3e-56	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004661	-	5827	XM_023334620	ENSXMAP00000004656	1805 (aa)	XP_023190388	M3ZR13

Gene Model

Click here to download ENSXMAG00000004638's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004638's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004638	pdcd11	99	44.692	ENSG00000148843	PDCD11	99	44.533	Homo_sapiens
ENSXMAG00000004638	pdcd11	100	74.807	ENSAPOG00000015629	pdcd11	100	74.477	Acanthochromis_polyacanthus
ENSXMAG00000004638	pdcd11	99	44.979	ENSAMEG00000017935	PDCD11	99	44.868	Ailuropoda_melanoleuca
ENSXMAG00000004638	pdcd11	50	65.683	ENSACIG00000006458	-	98	65.574	Amphilophus_citrinellus
ENSXMAG00000004638	pdcd11	100	74.518	ENSAOCG00000015287	pdcd11	100	74.188	Amphiprion_ocellaris
ENSXMAG00000004638	pdcd11	55	70.887	ENSAPEG00000020240	pdcd11	98	70.289	Amphiprion_percula
ENSXMAG00000004638	pdcd11	99	73.447	ENSATEG00000021043	pdcd11	99	73.267	Anabas_testudineus
ENSXMAG00000004638	pdcd11	99	44.778	ENSAPLG00000010301	PDCD11	99	44.724	Anas_platyrhynchos
ENSXMAG00000004638	pdcd11	99	45.158	ENSACAG00000004796	PDCD11	99	45.030	Anolis_carolinensis
ENSXMAG00000004638	pdcd11	99	44.350	ENSANAG00000034576	PDCD11	99	44.297	Aotus_nancymaae
ENSXMAG00000004638	pdcd11	93	88.411	ENSACLG00000018236	pdcd11	99	81.143	Astatotilapia_calliptera
ENSXMAG00000004638	pdcd11	96	59.553	ENSAMXG00000005458	pdcd11	92	75.080	Astyanax_mexicanus
ENSXMAG00000004638	pdcd11	99	44.879	ENSBTAG00000009715	PDCD11	99	44.727	Bos_taurus
ENSXMAG00000004638	pdcd11	99	43.996	ENSCJAG00000018257	PDCD11	99	44.285	Callithrix_jacchus
ENSXMAG00000004638	pdcd11	99	44.846	ENSCAFG00000010411	PDCD11	99	44.923	Canis_familiaris
ENSXMAG00000004638	pdcd11	99	45.450	ENSCAFG00020010369	PDCD11	99	45.288	Canis_lupus_dingo
ENSXMAG00000004638	pdcd11	99	44.773	ENSCHIG00000025218	PDCD11	99	44.680	Capra_hircus
ENSXMAG00000004638	pdcd11	96	44.308	ENSTSYG00000033423	PDCD11	98	44.252	Carlito_syrichta
ENSXMAG00000004638	pdcd11	92	39.548	ENSCAPG00000005386	PDCD11	99	39.611	Cavia_aperea
ENSXMAG00000004638	pdcd11	99	43.457	ENSCPOG00000010957	PDCD11	99	44.401	Cavia_porcellus
ENSXMAG00000004638	pdcd11	99	44.273	ENSCCAG00000018950	PDCD11	99	44.379	Cebus_capucinus
ENSXMAG00000004638	pdcd11	99	44.315	ENSCATG00000044331	PDCD11	99	44.285	Cercocebus_atys
ENSXMAG00000004638	pdcd11	99	44.159	ENSCLAG00000001029	PDCD11	99	44.105	Chinchilla_lanigera
ENSXMAG00000004638	pdcd11	99	44.338	ENSCSAG00000005346	PDCD11	99	44.232	Chlorocebus_sabaeus
ENSXMAG00000004638	pdcd11	69	72.093	ENSCHOG00000004796	PDCD11	74	72.093	Choloepus_hoffmanni
ENSXMAG00000004638	pdcd11	93	60.490	ENSCPBG00000024487	PDCD11	99	63.988	Chrysemys_picta_bellii
ENSXMAG00000004638	pdcd11	99	34.274	ENSCING00000002715	-	86	36.413	Ciona_intestinalis
ENSXMAG00000004638	pdcd11	99	44.492	ENSCANG00000043300	PDCD11	99	44.439	Colobus_angolensis_palliatus
ENSXMAG00000004638	pdcd11	99	44.268	ENSCGRG00001006458	Pdcd11	99	44.397	Cricetulus_griseus_chok1gshd
ENSXMAG00000004638	pdcd11	99	44.161	ENSCGRG00000003583	Pdcd11	99	44.267	Cricetulus_griseus_crigri
ENSXMAG00000004638	pdcd11	97	69.479	ENSCSEG00000010739	pdcd11	99	69.348	Cynoglossus_semilaevis
ENSXMAG00000004638	pdcd11	99	70.805	ENSCVAG00000018903	pdcd11	100	70.805	Cyprinodon_variegatus
ENSXMAG00000004638	pdcd11	100	51.728	ENSDARG00000052480	pdcd11	100	51.838	Danio_rerio
ENSXMAG00000004638	pdcd11	99	44.115	ENSDNOG00000013838	PDCD11	99	43.767	Dasypus_novemcinctus
ENSXMAG00000004638	pdcd11	99	43.680	ENSDORG00000010420	Pdcd11	99	44.078	Dipodomys_ordii
ENSXMAG00000004638	pdcd11	56	30.695	FBgn0039182	CG5728	68	32.955	Drosophila_melanogaster
ENSXMAG00000004638	pdcd11	93	40.183	ENSETEG00000000813	PDCD11	98	40.126	Echinops_telfairi
ENSXMAG00000004638	pdcd11	73	50.345	ENSEBUG00000002358	-	89	50.345	Eptatretus_burgeri
ENSXMAG00000004638	pdcd11	95	45.444	ENSEASG00005015159	PDCD11	99	45.692	Equus_asinus_asinus
ENSXMAG00000004638	pdcd11	99	45.334	ENSECAG00000020507	PDCD11	99	45.387	Equus_caballus
ENSXMAG00000004638	pdcd11	89	45.495	ENSEEUG00000009245	PDCD11	89	54.545	Erinaceus_europaeus
ENSXMAG00000004638	pdcd11	100	58.717	ENSELUG00000004211	pdcd11	99	58.530	Esox_lucius
ENSXMAG00000004638	pdcd11	99	44.509	ENSFCAG00000002384	PDCD11	99	44.533	Felis_catus
ENSXMAG00000004638	pdcd11	99	45.955	ENSFALG00000008775	PDCD11	99	45.901	Ficedula_albicollis
ENSXMAG00000004638	pdcd11	99	44.533	ENSFDAG00000009532	PDCD11	99	44.267	Fukomys_damarensis
ENSXMAG00000004638	pdcd11	89	92.105	ENSFHEG00000022997	pdcd11	96	92.105	Fundulus_heteroclitus
ENSXMAG00000004638	pdcd11	93	61.412	ENSGMOG00000004186	pdcd11	94	61.286	Gadus_morhua
ENSXMAG00000004638	pdcd11	77	43.258	ENSGALG00000008265	PDCD11	99	42.593	Gallus_gallus
ENSXMAG00000004638	pdcd11	96	91.231	ENSGAFG00000012806	pdcd11	100	90.858	Gambusia_affinis
ENSXMAG00000004638	pdcd11	100	69.130	ENSGACG00000018233	pdcd11	97	82.415	Gasterosteus_aculeatus
ENSXMAG00000004638	pdcd11	95	47.348	ENSGAGG00000024314	PDCD11	99	48.043	Gopherus_agassizii
ENSXMAG00000004638	pdcd11	99	44.302	ENSGGOG00000011621	PDCD11	99	44.166	Gorilla_gorilla
ENSXMAG00000004638	pdcd11	99	73.513	ENSHBUG00000020226	pdcd11	99	73.344	Haplochromis_burtoni
ENSXMAG00000004638	pdcd11	99	44.427	ENSHGLG00000001462	PDCD11	99	44.427	Heterocephalus_glaber_female
ENSXMAG00000004638	pdcd11	99	43.949	ENSHGLG00100018779	PDCD11	99	43.737	Heterocephalus_glaber_male
ENSXMAG00000004638	pdcd11	100	68.757	ENSHCOG00000016006	pdcd11	100	68.575	Hippocampus_comes
ENSXMAG00000004638	pdcd11	62	52.014	ENSIPUG00000015102	pdcd11	99	53.978	Ictalurus_punctatus
ENSXMAG00000004638	pdcd11	99	44.510	ENSSTOG00000014553	PDCD11	99	44.474	Ictidomys_tridecemlineatus
ENSXMAG00000004638	pdcd11	99	44.879	ENSJJAG00000015523	Pdcd11	99	45.303	Jaculus_jaculus
ENSXMAG00000004638	pdcd11	51	69.231	ENSKMAG00000021182	pdcd11	99	69.231	Kryptolebias_marmoratus
ENSXMAG00000004638	pdcd11	99	54.720	ENSLOCG00000011818	pdcd11	99	54.765	Lepisosteus_oculatus
ENSXMAG00000004638	pdcd11	99	44.989	ENSLAFG00000008398	PDCD11	99	44.666	Loxodonta_africana
ENSXMAG00000004638	pdcd11	99	44.279	ENSMFAG00000044058	PDCD11	99	44.332	Macaca_fascicularis
ENSXMAG00000004638	pdcd11	99	44.279	ENSMMUG00000007058	PDCD11	99	44.332	Macaca_mulatta
ENSXMAG00000004638	pdcd11	99	44.338	ENSMNEG00000040726	PDCD11	99	44.368	Macaca_nemestrina
ENSXMAG00000004638	pdcd11	99	44.787	ENSMLEG00000040978	PDCD11	99	44.582	Mandrillus_leucophaeus
ENSXMAG00000004638	pdcd11	100	73.872	ENSMAMG00000009572	pdcd11	100	73.583	Mastacembelus_armatus
ENSXMAG00000004638	pdcd11	99	73.554	ENSMZEG00005008949	pdcd11	99	73.344	Maylandia_zebra
ENSXMAG00000004638	pdcd11	99	45.035	ENSMGAG00000010482	PDCD11	99	45.498	Meleagris_gallopavo
ENSXMAG00000004638	pdcd11	90	48.027	ENSMAUG00000014924	Pdcd11	96	48.638	Mesocricetus_auratus
ENSXMAG00000004638	pdcd11	99	45.154	ENSMICG00000012421	PDCD11	99	44.989	Microcebus_murinus
ENSXMAG00000004638	pdcd11	99	44.718	ENSMOCG00000021792	Pdcd11	99	44.842	Microtus_ochrogaster
ENSXMAG00000004638	pdcd11	99	60.011	ENSMMOG00000007572	pdcd11	97	69.121	Mola_mola
ENSXMAG00000004638	pdcd11	99	49.223	ENSMODG00000011077	PDCD11	94	48.966	Monodelphis_domestica
ENSXMAG00000004638	pdcd11	100	60.984	ENSMALG00000003859	pdcd11	99	70.217	Monopterus_albus
ENSXMAG00000004638	pdcd11	99	43.476	MGP_CAROLIEiJ_G0023050	Pdcd11	99	43.278	Mus_caroli
ENSXMAG00000004638	pdcd11	99	43.139	ENSMUSG00000025047	Pdcd11	99	43.323	Mus_musculus
ENSXMAG00000004638	pdcd11	99	43.654	MGP_PahariEiJ_G0014540	Pdcd11	99	43.594	Mus_pahari
ENSXMAG00000004638	pdcd11	99	43.360	MGP_SPRETEiJ_G0023971	Pdcd11	99	43.543	Mus_spretus
ENSXMAG00000004638	pdcd11	99	45.053	ENSMPUG00000016829	PDCD11	99	45.508	Mustela_putorius_furo
ENSXMAG00000004638	pdcd11	99	44.767	ENSMLUG00000004997	PDCD11	99	44.791	Myotis_lucifugus
ENSXMAG00000004638	pdcd11	99	44.833	ENSNGAG00000018143	Pdcd11	99	44.592	Nannospalax_galili
ENSXMAG00000004638	pdcd11	85	81.789	ENSNBRG00000021596	pdcd11	95	76.369	Neolamprologus_brichardi
ENSXMAG00000004638	pdcd11	99	43.193	ENSNLEG00000026700	PDCD11	99	43.193	Nomascus_leucogenys
ENSXMAG00000004638	pdcd11	70	67.556	ENSMEUG00000013719	-	61	67.556	Notamacropus_eugenii
ENSXMAG00000004638	pdcd11	99	45.299	ENSOPRG00000010593	PDCD11	96	45.299	Ochotona_princeps
ENSXMAG00000004638	pdcd11	99	43.922	ENSODEG00000008079	PDCD11	99	44.074	Octodon_degus
ENSXMAG00000004638	pdcd11	99	74.174	ENSONIG00000018835	pdcd11	99	73.635	Oreochromis_niloticus
ENSXMAG00000004638	pdcd11	99	44.157	ENSOANG00000001636	-	99	44.157	Ornithorhynchus_anatinus
ENSXMAG00000004638	pdcd11	99	44.744	ENSOCUG00000006312	PDCD11	99	44.773	Oryctolagus_cuniculus
ENSXMAG00000004638	pdcd11	100	71.743	ENSORLG00020003642	pdcd11	100	71.295	Oryzias_latipes_hni
ENSXMAG00000004638	pdcd11	100	71.782	ENSORLG00015001618	pdcd11	100	71.279	Oryzias_latipes_hsok
ENSXMAG00000004638	pdcd11	65	71.186	ENSOMEG00000010904	pdcd11	98	71.186	Oryzias_melastigma
ENSXMAG00000004638	pdcd11	99	44.870	ENSOGAG00000008683	PDCD11	99	44.787	Otolemur_garnettii
ENSXMAG00000004638	pdcd11	99	44.374	ENSOARG00000003719	PDCD11	99	44.386	Ovis_aries
ENSXMAG00000004638	pdcd11	99	44.043	ENSPPAG00000024593	PDCD11	99	45.000	Pan_paniscus
ENSXMAG00000004638	pdcd11	99	44.668	ENSPPRG00000015133	PDCD11	99	44.875	Panthera_pardus
ENSXMAG00000004638	pdcd11	99	44.615	ENSPTIG00000011433	PDCD11	99	44.610	Panthera_tigris_altaica
ENSXMAG00000004638	pdcd11	99	44.633	ENSPTRG00000002911	PDCD11	99	44.527	Pan_troglodytes
ENSXMAG00000004638	pdcd11	99	44.439	ENSPANG00000020959	PDCD11	99	44.492	Papio_anubis
ENSXMAG00000004638	pdcd11	99	54.586	ENSPKIG00000000973	pdcd11	99	54.375	Paramormyrops_kingsleyae
ENSXMAG00000004638	pdcd11	78	43.511	ENSPSIG00000005102	PDCD11	95	43.590	Pelodiscus_sinensis
ENSXMAG00000004638	pdcd11	84	65.772	ENSPMGG00000007289	pdcd11	100	82.243	Periophthalmus_magnuspinnatus
ENSXMAG00000004638	pdcd11	99	43.939	ENSPEMG00000010315	Pdcd11	99	43.902	Peromyscus_maniculatus_bairdii
ENSXMAG00000004638	pdcd11	99	41.335	ENSPMAG00000003098	pdcd11	99	41.277	Petromyzon_marinus
ENSXMAG00000004638	pdcd11	100	43.711	ENSPCIG00000001118	PDCD11	100	43.553	Phascolarctos_cinereus
ENSXMAG00000004638	pdcd11	100	92.299	ENSPFOG00000006012	pdcd11	100	92.299	Poecilia_formosa
ENSXMAG00000004638	pdcd11	98	88.000	ENSPLAG00000014494	pdcd11	100	87.704	Poecilia_latipinna
ENSXMAG00000004638	pdcd11	98	75.036	ENSPMEG00000018177	pdcd11	98	85.793	Poecilia_mexicana
ENSXMAG00000004638	pdcd11	100	92.099	ENSPREG00000000475	pdcd11	100	92.099	Poecilia_reticulata
ENSXMAG00000004638	pdcd11	99	43.759	ENSPPYG00000002621	PDCD11	99	43.901	Pongo_abelii
ENSXMAG00000004638	pdcd11	63	51.931	ENSPCAG00000011663	PDCD11	65	51.931	Procavia_capensis
ENSXMAG00000004638	pdcd11	92	49.733	ENSPCOG00000023327	PDCD11	99	40.491	Propithecus_coquereli
ENSXMAG00000004638	pdcd11	99	43.866	ENSPVAG00000004176	PDCD11	99	44.274	Pteropus_vampyrus
ENSXMAG00000004638	pdcd11	99	73.458	ENSPNYG00000003979	pdcd11	99	73.249	Pundamilia_nyererei
ENSXMAG00000004638	pdcd11	95	56.275	ENSPNAG00000017225	pdcd11	100	56.504	Pygocentrus_nattereri
ENSXMAG00000004638	pdcd11	99	43.515	ENSRNOG00000020304	Pdcd11	99	43.220	Rattus_norvegicus
ENSXMAG00000004638	pdcd11	99	44.226	ENSRBIG00000011889	PDCD11	99	44.172	Rhinopithecus_bieti
ENSXMAG00000004638	pdcd11	99	44.226	ENSRROG00000030483	PDCD11	99	44.172	Rhinopithecus_roxellana
ENSXMAG00000004638	pdcd11	99	33.155	YMR229C	-	97	31.320	Saccharomyces_cerevisiae
ENSXMAG00000004638	pdcd11	99	43.353	ENSSBOG00000030308	PDCD11	99	43.353	Saimiri_boliviensis_boliviensis
ENSXMAG00000004638	pdcd11	99	42.614	ENSSHAG00000018258	PDCD11	99	42.774	Sarcophilus_harrisii
ENSXMAG00000004638	pdcd11	100	55.006	ENSSFOG00015003881	pdcd11	100	54.706	Scleropages_formosus
ENSXMAG00000004638	pdcd11	100	73.525	ENSSMAG00000006612	pdcd11	100	73.198	Scophthalmus_maximus
ENSXMAG00000004638	pdcd11	98	67.737	ENSSDUG00000021302	pdcd11	99	69.071	Seriola_dumerili
ENSXMAG00000004638	pdcd11	50	71.848	ENSSLDG00000010228	pdcd11	99	71.491	Seriola_lalandi_dorsalis
ENSXMAG00000004638	pdcd11	76	65.306	ENSSARG00000002540	PDCD11	70	65.306	Sorex_araneus
ENSXMAG00000004638	pdcd11	97	73.326	ENSSPAG00000017558	pdcd11	100	73.439	Stegastes_partitus
ENSXMAG00000004638	pdcd11	99	44.685	ENSSSCG00000010599	PDCD11	99	45.208	Sus_scrofa
ENSXMAG00000004638	pdcd11	70	67.240	ENSTRUG00000014291	pdcd11	100	66.980	Takifugu_rubripes
ENSXMAG00000004638	pdcd11	99	66.613	ENSTNIG00000012085	pdcd11	99	66.327	Tetraodon_nigroviridis
ENSXMAG00000004638	pdcd11	95	61.224	ENSTBEG00000001893	PDCD11	93	60.534	Tupaia_belangeri
ENSXMAG00000004638	pdcd11	96	66.554	ENSTTRG00000003356	PDCD11	93	43.515	Tursiops_truncatus
ENSXMAG00000004638	pdcd11	99	44.780	ENSUAMG00000018015	PDCD11	99	45.016	Ursus_americanus
ENSXMAG00000004638	pdcd11	99	43.786	ENSUMAG00000023567	PDCD11	99	44.116	Ursus_maritimus
ENSXMAG00000004638	pdcd11	63	51.807	ENSVPAG00000007405	PDCD11	78	51.807	Vicugna_pacos
ENSXMAG00000004638	pdcd11	99	44.952	ENSVVUG00000004457	PDCD11	99	45.136	Vulpes_vulpes
ENSXMAG00000004638	pdcd11	99	45.541	ENSXETG00000009482	pdcd11	99	45.585	Xenopus_tropicalis
ENSXMAG00000004638	pdcd11	100	79.592	ENSXCOG00000012420	pdcd11	100	70.867	Xiphophorus_couchianus