EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004683 (Gene tree)
Gene ID: 102236184
Gene Symbol: zgc:171927
Alias: -
Full Name: ras-related protein Rab-1B-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 4987 bases
Position: chr18:2517219-2522205
Accession: 102236184
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004695	MMR_HSR1	PF01926.23	7.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004700	-	1175	XM_005810546	ENSXMAP00000004695	214 (aa)	XP_005810603	M3ZR52
ENSXMAT00000041826	-	285	-	ENSXMAP00000032980	94 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000004683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004683's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004683	zgc:171927	100	94.860	ENSAPOG00000004980	-	100	94.860	Acanthochromis_polyacanthus
ENSXMAG00000004683	zgc:171927	100	94.393	ENSACIG00000009006	zgc:171927	100	94.393	Amphilophus_citrinellus
ENSXMAG00000004683	zgc:171927	71	89.677	ENSAOCG00000013808	-	93	98.347	Amphiprion_ocellaris
ENSXMAG00000004683	zgc:171927	100	92.056	ENSAOCG00000024149	-	100	92.056	Amphiprion_ocellaris
ENSXMAG00000004683	zgc:171927	100	92.523	ENSAPEG00000022171	zgc:171927	99	92.523	Amphiprion_percula
ENSXMAG00000004683	zgc:171927	100	93.458	ENSATEG00000003430	zgc:171927	100	93.458	Anabas_testudineus
ENSXMAG00000004683	zgc:171927	100	94.393	ENSACLG00000013734	-	100	94.393	Astatotilapia_calliptera
ENSXMAG00000004683	zgc:171927	100	78.140	ENSAMXG00000039486	zgc:171927	100	78.140	Astyanax_mexicanus
ENSXMAG00000004683	zgc:171927	100	90.187	ENSCSEG00000014416	zgc:171927	100	90.187	Cynoglossus_semilaevis
ENSXMAG00000004683	zgc:171927	100	94.860	ENSCVAG00000009222	zgc:171927	100	94.860	Cyprinodon_variegatus
ENSXMAG00000004683	zgc:171927	100	77.209	ENSDARG00000033056	zgc:171927	100	77.209	Danio_rerio
ENSXMAG00000004683	zgc:171927	100	78.704	ENSELUG00000011680	zgc:171927	100	78.704	Esox_lucius
ENSXMAG00000004683	zgc:171927	100	95.327	ENSFHEG00000022176	zgc:171927	100	95.327	Fundulus_heteroclitus
ENSXMAG00000004683	zgc:171927	98	78.673	ENSGMOG00000004979	-	97	78.673	Gadus_morhua
ENSXMAG00000004683	zgc:171927	98	97.129	ENSGAFG00000015702	zgc:171927	84	97.129	Gambusia_affinis
ENSXMAG00000004683	zgc:171927	100	91.121	ENSGACG00000013401	zgc:171927	99	91.121	Gasterosteus_aculeatus
ENSXMAG00000004683	zgc:171927	100	94.393	ENSHBUG00000002397	-	100	94.393	Haplochromis_burtoni
ENSXMAG00000004683	zgc:171927	100	93.925	ENSKMAG00000009856	zgc:171927	100	93.925	Kryptolebias_marmoratus
ENSXMAG00000004683	zgc:171927	98	89.952	ENSLBEG00000027226	-	89	89.952	Labrus_bergylta
ENSXMAG00000004683	zgc:171927	100	90.654	ENSLBEG00000005791	-	100	90.654	Labrus_bergylta
ENSXMAG00000004683	zgc:171927	98	71.429	ENSLOCG00000014692	zgc:171927	96	71.429	Lepisosteus_oculatus
ENSXMAG00000004683	zgc:171927	100	92.056	ENSMAMG00000020135	zgc:171927	100	92.056	Mastacembelus_armatus
ENSXMAG00000004683	zgc:171927	100	94.393	ENSMZEG00005024685	-	100	94.393	Maylandia_zebra
ENSXMAG00000004683	zgc:171927	100	88.318	ENSMMOG00000009833	-	100	88.318	Mola_mola
ENSXMAG00000004683	zgc:171927	100	90.654	ENSMALG00000021129	zgc:171927	100	90.654	Monopterus_albus
ENSXMAG00000004683	zgc:171927	100	93.925	ENSNBRG00000006202	zgc:171927	100	93.925	Neolamprologus_brichardi
ENSXMAG00000004683	zgc:171927	100	91.121	ENSORLG00000000602	zgc:171927	100	91.121	Oryzias_latipes
ENSXMAG00000004683	zgc:171927	100	91.121	ENSORLG00020021071	zgc:171927	100	91.121	Oryzias_latipes_hni
ENSXMAG00000004683	zgc:171927	100	91.121	ENSORLG00015010098	zgc:171927	100	91.121	Oryzias_latipes_hsok
ENSXMAG00000004683	zgc:171927	100	92.523	ENSOMEG00000020594	zgc:171927	100	92.523	Oryzias_melastigma
ENSXMAG00000004683	zgc:171927	100	98.131	ENSPFOG00000013810	zgc:171927	99	98.131	Poecilia_formosa
ENSXMAG00000004683	zgc:171927	100	96.729	ENSPLAG00000005869	zgc:171927	100	96.729	Poecilia_latipinna
ENSXMAG00000004683	zgc:171927	100	98.131	ENSPMEG00000022350	zgc:171927	100	98.131	Poecilia_mexicana
ENSXMAG00000004683	zgc:171927	100	98.598	ENSPREG00000017517	zgc:171927	100	98.598	Poecilia_reticulata
ENSXMAG00000004683	zgc:171927	100	94.393	ENSPNYG00000007520	-	100	94.393	Pundamilia_nyererei
ENSXMAG00000004683	zgc:171927	100	78.140	ENSPNAG00000029574	zgc:171927	100	78.140	Pygocentrus_nattereri
ENSXMAG00000004683	zgc:171927	100	76.744	ENSSFOG00015005464	zgc:171927	99	76.744	Scleropages_formosus
ENSXMAG00000004683	zgc:171927	100	90.187	ENSSMAG00000004416	-	100	90.187	Scophthalmus_maximus
ENSXMAG00000004683	zgc:171927	100	94.860	ENSSDUG00000004445	zgc:171927	100	94.860	Seriola_dumerili
ENSXMAG00000004683	zgc:171927	100	94.860	ENSSLDG00000018024	zgc:171927	100	94.860	Seriola_lalandi_dorsalis
ENSXMAG00000004683	zgc:171927	100	93.925	ENSSPAG00000013533	zgc:171927	100	93.925	Stegastes_partitus
ENSXMAG00000004683	zgc:171927	100	99.065	ENSXCOG00000010695	zgc:171927	100	99.065	Xiphophorus_couchianus