EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004713 (Gene tree)
Gene ID: 102219312
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 8740 bases
Position: chr2:12829864-12838603
Accession: 102219312
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004744	PRP4	PF08799.11	3.3e-13	1	1
ENSXMAP00000026790	PRP4	PF08799.11	3.4e-13	1	1
ENSXMAP00000004744	Prp18	PF02840.15	4.2e-62	1	1
ENSXMAP00000026790	Prp18	PF02840.15	4.4e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004749	-	1775	XM_023327180	ENSXMAP00000004744	376 (aa)	XP_023182948	M3ZRA1
ENSXMAT00000038682	-	1802	XM_005802027	ENSXMAP00000026790	385 (aa)	XP_005802084	-

Gene Model

Click here to download ENSXMAG00000004713's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004713's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004713	prpf18	91	83.333	ENSG00000165630	PRPF18	100	83.333	Homo_sapiens
ENSXMAG00000004713	prpf18	91	93.255	ENSAPOG00000024177	prpf18	100	93.255	Acanthochromis_polyacanthus
ENSXMAG00000004713	prpf18	91	82.749	ENSAMEG00000013591	-	100	82.749	Ailuropoda_melanoleuca
ENSXMAG00000004713	prpf18	91	92.669	ENSACIG00000001186	prpf18	100	92.669	Amphilophus_citrinellus
ENSXMAG00000004713	prpf18	89	93.713	ENSAOCG00000006572	prpf18	94	92.982	Amphiprion_ocellaris
ENSXMAG00000004713	prpf18	91	93.842	ENSAPEG00000004564	prpf18	100	93.842	Amphiprion_percula
ENSXMAG00000004713	prpf18	91	92.669	ENSATEG00000000303	prpf18	100	92.669	Anabas_testudineus
ENSXMAG00000004713	prpf18	90	81.176	ENSAPLG00000003387	-	99	81.176	Anas_platyrhynchos
ENSXMAG00000004713	prpf18	91	82.267	ENSACAG00000000818	-	100	82.267	Anolis_carolinensis
ENSXMAG00000004713	prpf18	91	83.333	ENSANAG00000037445	-	100	83.333	Aotus_nancymaae
ENSXMAG00000004713	prpf18	91	91.789	ENSACLG00000026296	prpf18	100	91.789	Astatotilapia_calliptera
ENSXMAG00000004713	prpf18	91	89.143	ENSAMXG00000012848	prpf18	100	89.143	Astyanax_mexicanus
ENSXMAG00000004713	prpf18	91	82.749	ENSBTAG00000017244	PRPF18	100	82.749	Bos_taurus
ENSXMAG00000004713	prpf18	89	39.193	WBGene00009320	F32B6.3	97	39.193	Caenorhabditis_elegans
ENSXMAG00000004713	prpf18	91	83.333	ENSCJAG00000009432	-	100	83.333	Callithrix_jacchus
ENSXMAG00000004713	prpf18	91	82.749	ENSCAFG00000004735	-	100	82.749	Canis_familiaris
ENSXMAG00000004713	prpf18	91	82.749	ENSCAFG00020007712	-	100	82.749	Canis_lupus_dingo
ENSXMAG00000004713	prpf18	91	82.749	ENSCHIG00000000499	-	100	82.749	Capra_hircus
ENSXMAG00000004713	prpf18	91	83.041	ENSTSYG00000003517	-	100	83.041	Carlito_syrichta
ENSXMAG00000004713	prpf18	91	83.333	ENSCPOG00000021069	-	100	83.333	Cavia_porcellus
ENSXMAG00000004713	prpf18	91	83.333	ENSCCAG00000036822	-	100	83.333	Cebus_capucinus
ENSXMAG00000004713	prpf18	91	72.515	ENSCATG00000016633	-	100	72.515	Cercocebus_atys
ENSXMAG00000004713	prpf18	91	83.041	ENSCLAG00000011770	-	100	83.041	Chinchilla_lanigera
ENSXMAG00000004713	prpf18	91	81.766	ENSCSAG00000013109	-	100	81.766	Chlorocebus_sabaeus
ENSXMAG00000004713	prpf18	91	79.494	ENSCPBG00000003100	-	100	80.337	Chrysemys_picta_bellii
ENSXMAG00000004713	prpf18	90	55.294	ENSCING00000020481	-	97	55.294	Ciona_intestinalis
ENSXMAG00000004713	prpf18	90	54.438	ENSCSAVG00000010546	-	99	54.412	Ciona_savignyi
ENSXMAG00000004713	prpf18	91	83.333	ENSCANG00000034900	-	100	83.333	Colobus_angolensis_palliatus
ENSXMAG00000004713	prpf18	91	83.041	ENSCGRG00001023665	Prpf18	100	83.041	Cricetulus_griseus_chok1gshd
ENSXMAG00000004713	prpf18	91	83.041	ENSCGRG00000014690	Prpf18	100	83.041	Cricetulus_griseus_crigri
ENSXMAG00000004713	prpf18	91	88.856	ENSCSEG00000005536	prpf18	99	88.856	Cynoglossus_semilaevis
ENSXMAG00000004713	prpf18	91	96.857	ENSCVAG00000012401	prpf18	100	96.857	Cyprinodon_variegatus
ENSXMAG00000004713	prpf18	91	88.304	ENSDARG00000058306	prpf18	100	88.304	Danio_rerio
ENSXMAG00000004713	prpf18	91	82.749	ENSDNOG00000035607	-	100	82.749	Dasypus_novemcinctus
ENSXMAG00000004713	prpf18	91	82.456	ENSDORG00000000858	Prpf18	100	82.456	Dipodomys_ordii
ENSXMAG00000004713	prpf18	90	52.367	FBgn0027784	Prp18	98	52.367	Drosophila_melanogaster
ENSXMAG00000004713	prpf18	91	75.439	ENSETEG00000015060	-	100	75.439	Echinops_telfairi
ENSXMAG00000004713	prpf18	91	69.452	ENSEBUG00000016502	prpf18	99	68.588	Eptatretus_burgeri
ENSXMAG00000004713	prpf18	91	83.041	ENSEASG00005019373	-	100	83.041	Equus_asinus_asinus
ENSXMAG00000004713	prpf18	91	83.041	ENSECAG00000006997	PRPF18	100	83.041	Equus_caballus
ENSXMAG00000004713	prpf18	67	100.000	ENSEEUG00000001171	-	79	100.000	Erinaceus_europaeus
ENSXMAG00000004713	prpf18	91	87.464	ENSELUG00000022190	prpf18	100	87.464	Esox_lucius
ENSXMAG00000004713	prpf18	91	83.041	ENSFCAG00000004436	-	100	83.041	Felis_catus
ENSXMAG00000004713	prpf18	84	79.077	ENSFALG00000001912	-	97	79.385	Ficedula_albicollis
ENSXMAG00000004713	prpf18	85	85.000	ENSFDAG00000014026	-	100	85.000	Fukomys_damarensis
ENSXMAG00000004713	prpf18	91	56.447	ENSFDAG00000010713	-	97	56.447	Fukomys_damarensis
ENSXMAG00000004713	prpf18	73	98.168	ENSFHEG00000020125	prpf18	100	98.168	Fundulus_heteroclitus
ENSXMAG00000004713	prpf18	90	87.059	ENSGMOG00000012210	prpf18	99	87.059	Gadus_morhua
ENSXMAG00000004713	prpf18	91	82.164	ENSGALG00000043593	-	100	82.164	Gallus_gallus
ENSXMAG00000004713	prpf18	91	97.947	ENSGAFG00000006034	prpf18	100	97.947	Gambusia_affinis
ENSXMAG00000004713	prpf18	91	88.856	ENSGACG00000012232	prpf18	100	88.856	Gasterosteus_aculeatus
ENSXMAG00000004713	prpf18	91	83.333	ENSGAGG00000016878	-	100	83.333	Gopherus_agassizii
ENSXMAG00000004713	prpf18	84	82.595	ENSGGOG00000025188	-	96	82.595	Gorilla_gorilla
ENSXMAG00000004713	prpf18	91	91.789	ENSHBUG00000010264	prpf18	100	91.789	Haplochromis_burtoni
ENSXMAG00000004713	prpf18	91	82.749	ENSHGLG00000018534	PRPF18	100	82.749	Heterocephalus_glaber_female
ENSXMAG00000004713	prpf18	85	84.688	ENSHGLG00100012161	-	98	84.688	Heterocephalus_glaber_male
ENSXMAG00000004713	prpf18	91	92.962	ENSHCOG00000015987	prpf18	100	92.962	Hippocampus_comes
ENSXMAG00000004713	prpf18	91	81.586	ENSIPUG00000007432	prpf18	100	82.153	Ictalurus_punctatus
ENSXMAG00000004713	prpf18	91	83.041	ENSSTOG00000008735	-	100	83.041	Ictidomys_tridecemlineatus
ENSXMAG00000004713	prpf18	91	83.333	ENSJJAG00000024041	-	100	83.333	Jaculus_jaculus
ENSXMAG00000004713	prpf18	91	61.516	ENSJJAG00000015191	-	100	61.516	Jaculus_jaculus
ENSXMAG00000004713	prpf18	91	93.548	ENSKMAG00000012124	prpf18	100	93.548	Kryptolebias_marmoratus
ENSXMAG00000004713	prpf18	91	86.217	ENSLBEG00000028466	prpf18	99	87.500	Labrus_bergylta
ENSXMAG00000004713	prpf18	91	83.041	ENSLACG00000009885	prpf18	100	83.333	Latimeria_chalumnae
ENSXMAG00000004713	prpf18	91	87.135	ENSLOCG00000016736	prpf18	100	87.135	Lepisosteus_oculatus
ENSXMAG00000004713	prpf18	91	83.333	ENSLAFG00000007753	-	100	83.333	Loxodonta_africana
ENSXMAG00000004713	prpf18	91	83.333	ENSMFAG00000000540	-	100	83.333	Macaca_fascicularis
ENSXMAG00000004713	prpf18	91	83.333	ENSMMUG00000015071	PRPF18	100	83.333	Macaca_mulatta
ENSXMAG00000004713	prpf18	91	83.333	ENSMNEG00000024679	-	100	83.333	Macaca_nemestrina
ENSXMAG00000004713	prpf18	91	68.129	ENSMLEG00000031715	-	100	68.129	Mandrillus_leucophaeus
ENSXMAG00000004713	prpf18	91	91.789	ENSMAMG00000006610	prpf18	100	91.789	Mastacembelus_armatus
ENSXMAG00000004713	prpf18	91	91.789	ENSMZEG00005019392	prpf18	100	91.789	Maylandia_zebra
ENSXMAG00000004713	prpf18	91	82.164	ENSMGAG00000005023	-	100	82.164	Meleagris_gallopavo
ENSXMAG00000004713	prpf18	91	83.626	ENSMICG00000006572	-	100	83.626	Microcebus_murinus
ENSXMAG00000004713	prpf18	91	83.333	ENSMOCG00000021468	Prpf18	100	83.333	Microtus_ochrogaster
ENSXMAG00000004713	prpf18	91	92.962	ENSMMOG00000013012	prpf18	100	92.962	Mola_mola
ENSXMAG00000004713	prpf18	91	75.731	ENSMODG00000024043	-	100	75.731	Monodelphis_domestica
ENSXMAG00000004713	prpf18	88	78.402	ENSMODG00000016902	-	92	78.402	Monodelphis_domestica
ENSXMAG00000004713	prpf18	91	84.104	ENSMALG00000005486	prpf18	100	84.393	Monopterus_albus
ENSXMAG00000004713	prpf18	91	82.749	MGP_CAROLIEiJ_G0023143	Prpf18	100	94.521	Mus_caroli
ENSXMAG00000004713	prpf18	91	83.041	ENSMUSG00000039449	Prpf18	100	94.521	Mus_musculus
ENSXMAG00000004713	prpf18	91	83.041	MGP_PahariEiJ_G0019203	Prpf18	100	94.521	Mus_pahari
ENSXMAG00000004713	prpf18	91	83.041	MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	Mus_spretus
ENSXMAG00000004713	prpf18	91	83.041	ENSMPUG00000000938	-	100	83.041	Mustela_putorius_furo
ENSXMAG00000004713	prpf18	91	82.456	ENSMLUG00000009200	-	100	82.456	Myotis_lucifugus
ENSXMAG00000004713	prpf18	91	83.333	ENSNGAG00000012500	-	100	83.333	Nannospalax_galili
ENSXMAG00000004713	prpf18	62	81.034	ENSNGAG00000023550	-	83	81.034	Nannospalax_galili
ENSXMAG00000004713	prpf18	91	92.082	ENSNBRG00000001778	prpf18	100	92.082	Neolamprologus_brichardi
ENSXMAG00000004713	prpf18	91	83.333	ENSNLEG00000012186	-	100	83.333	Nomascus_leucogenys
ENSXMAG00000004713	prpf18	69	71.815	ENSMEUG00000005032	-	75	71.815	Notamacropus_eugenii
ENSXMAG00000004713	prpf18	70	63.774	ENSOPRG00000002153	-	100	63.774	Ochotona_princeps
ENSXMAG00000004713	prpf18	91	82.456	ENSODEG00000003770	-	100	82.456	Octodon_degus
ENSXMAG00000004713	prpf18	89	91.916	ENSONIG00000014854	prpf18	96	91.916	Oreochromis_niloticus
ENSXMAG00000004713	prpf18	91	84.211	ENSOANG00000015404	-	100	84.211	Ornithorhynchus_anatinus
ENSXMAG00000004713	prpf18	92	82.370	ENSOCUG00000027756	-	96	83.792	Oryctolagus_cuniculus
ENSXMAG00000004713	prpf18	91	90.000	ENSORLG00000010293	prpf18	100	90.000	Oryzias_latipes
ENSXMAG00000004713	prpf18	91	90.616	ENSORLG00020001530	prpf18	100	90.616	Oryzias_latipes_hni
ENSXMAG00000004713	prpf18	91	90.323	ENSORLG00015013705	prpf18	100	90.323	Oryzias_latipes_hsok
ENSXMAG00000004713	prpf18	91	91.789	ENSOMEG00000009167	prpf18	100	91.789	Oryzias_melastigma
ENSXMAG00000004713	prpf18	91	82.456	ENSOGAG00000007294	-	100	82.456	Otolemur_garnettii
ENSXMAG00000004713	prpf18	91	81.197	ENSOARG00000006243	-	100	81.197	Ovis_aries
ENSXMAG00000004713	prpf18	91	83.333	ENSPPAG00000041959	-	100	83.333	Pan_paniscus
ENSXMAG00000004713	prpf18	91	83.041	ENSPPRG00000000107	-	100	83.041	Panthera_pardus
ENSXMAG00000004713	prpf18	91	83.041	ENSPTIG00000021094	-	100	83.041	Panthera_tigris_altaica
ENSXMAG00000004713	prpf18	91	83.333	ENSPTRG00000002306	PRPF18	100	83.333	Pan_troglodytes
ENSXMAG00000004713	prpf18	91	83.041	ENSPANG00000023346	-	100	83.041	Papio_anubis
ENSXMAG00000004713	prpf18	81	100.000	ENSPKIG00000014128	prpf18	96	86.610	Paramormyrops_kingsleyae
ENSXMAG00000004713	prpf18	91	83.041	ENSPSIG00000016064	-	100	83.041	Pelodiscus_sinensis
ENSXMAG00000004713	prpf18	91	83.333	ENSPMGG00000016486	prpf18	100	83.333	Periophthalmus_magnuspinnatus
ENSXMAG00000004713	prpf18	91	83.041	ENSPEMG00000013704	Prpf18	100	83.041	Peromyscus_maniculatus_bairdii
ENSXMAG00000004713	prpf18	91	73.199	ENSPMAG00000000204	prpf18	100	73.199	Petromyzon_marinus
ENSXMAG00000004713	prpf18	84	82.595	ENSPCIG00000012963	-	99	82.595	Phascolarctos_cinereus
ENSXMAG00000004713	prpf18	91	98.286	ENSPFOG00000017611	prpf18	100	98.286	Poecilia_formosa
ENSXMAG00000004713	prpf18	91	98.240	ENSPLAG00000000369	prpf18	100	98.240	Poecilia_latipinna
ENSXMAG00000004713	prpf18	91	98.571	ENSPMEG00000005183	prpf18	100	98.571	Poecilia_mexicana
ENSXMAG00000004713	prpf18	91	97.361	ENSPREG00000015232	prpf18	100	97.361	Poecilia_reticulata
ENSXMAG00000004713	prpf18	91	83.041	ENSPPYG00000002101	PRPF18	100	83.041	Pongo_abelii
ENSXMAG00000004713	prpf18	91	65.497	ENSPCAG00000010833	-	100	65.497	Procavia_capensis
ENSXMAG00000004713	prpf18	91	79.765	ENSPCOG00000013057	-	100	79.765	Propithecus_coquereli
ENSXMAG00000004713	prpf18	91	50.000	ENSPVAG00000002947	-	100	50.000	Pteropus_vampyrus
ENSXMAG00000004713	prpf18	91	91.496	ENSPNYG00000003554	prpf18	100	91.496	Pundamilia_nyererei
ENSXMAG00000004713	prpf18	91	86.610	ENSPNAG00000023151	prpf18	100	86.610	Pygocentrus_nattereri
ENSXMAG00000004713	prpf18	91	83.041	ENSRNOG00000018396	Prpf18	100	83.041	Rattus_norvegicus
ENSXMAG00000004713	prpf18	91	83.626	ENSRBIG00000028028	-	100	83.626	Rhinopithecus_bieti
ENSXMAG00000004713	prpf18	91	83.333	ENSRROG00000040695	-	100	83.333	Rhinopithecus_roxellana
ENSXMAG00000004713	prpf18	91	83.333	ENSSBOG00000034482	-	100	83.333	Saimiri_boliviensis_boliviensis
ENSXMAG00000004713	prpf18	91	83.626	ENSSHAG00000016463	-	100	83.626	Sarcophilus_harrisii
ENSXMAG00000004713	prpf18	91	69.591	ENSSHAG00000009669	-	100	69.591	Sarcophilus_harrisii
ENSXMAG00000004713	prpf18	70	44.318	ENSSFOG00015021154	-	89	48.927	Scleropages_formosus
ENSXMAG00000004713	prpf18	89	84.058	ENSSFOG00015022118	prpf18	100	78.674	Scleropages_formosus
ENSXMAG00000004713	prpf18	91	90.323	ENSSMAG00000005308	prpf18	100	90.323	Scophthalmus_maximus
ENSXMAG00000004713	prpf18	91	93.255	ENSSDUG00000015428	prpf18	100	93.255	Seriola_dumerili
ENSXMAG00000004713	prpf18	91	92.962	ENSSLDG00000023989	prpf18	100	92.962	Seriola_lalandi_dorsalis
ENSXMAG00000004713	prpf18	91	54.971	ENSSARG00000005307	-	100	54.971	Sorex_araneus
ENSXMAG00000004713	prpf18	91	82.749	ENSSPUG00000002619	-	100	82.749	Sphenodon_punctatus
ENSXMAG00000004713	prpf18	91	93.548	ENSSPAG00000019502	prpf18	100	93.548	Stegastes_partitus
ENSXMAG00000004713	prpf18	91	82.749	ENSSSCG00000026354	-	100	82.749	Sus_scrofa
ENSXMAG00000004713	prpf18	91	81.871	ENSTGUG00000002286	-	100	81.871	Taeniopygia_guttata
ENSXMAG00000004713	prpf18	91	90.323	ENSTRUG00000011278	prpf18	100	90.323	Takifugu_rubripes
ENSXMAG00000004713	prpf18	91	90.029	ENSTNIG00000000911	prpf18	100	90.029	Tetraodon_nigroviridis
ENSXMAG00000004713	prpf18	72	97.436	ENSTBEG00000013011	-	79	97.436	Tupaia_belangeri
ENSXMAG00000004713	prpf18	91	83.626	ENSTTRG00000011117	PRPF18	100	83.626	Tursiops_truncatus
ENSXMAG00000004713	prpf18	82	85.531	ENSUAMG00000001815	-	93	85.531	Ursus_americanus
ENSXMAG00000004713	prpf18	91	78.070	ENSUMAG00000012329	-	100	78.070	Ursus_maritimus
ENSXMAG00000004713	prpf18	91	77.193	ENSVPAG00000011486	-	100	77.193	Vicugna_pacos
ENSXMAG00000004713	prpf18	91	82.749	ENSVVUG00000005453	-	100	82.749	Vulpes_vulpes
ENSXMAG00000004713	prpf18	91	75.072	ENSXETG00000024057	prpf18	100	75.072	Xenopus_tropicalis
ENSXMAG00000004713	prpf18	91	99.125	ENSXCOG00000020414	prpf18	100	99.125	Xiphophorus_couchianus