EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004799 (Gene tree)
Gene ID: 102228439
Gene Symbol: mtrex
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 16987 bases
Position: chr8:18298083-18315069
Accession: 102228439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000020766	rRNA_proc-arch	PF13234.6	2.3e-88	1	1
ENSXMAP00000004851	rRNA_proc-arch	PF13234.6	2.4e-88	1	1
ENSXMAP00000029511	rRNA_proc-arch	PF13234.6	3.9e-88	1	1
ENSXMAP00000029511	DEAD	PF00270.29	5.2e-17	1	1
ENSXMAP00000020766	DEAD	PF00270.29	5.8e-17	1	1
ENSXMAP00000004851	DEAD	PF00270.29	5.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004856	-	3552	XM_005798641	ENSXMAP00000004851	1036 (aa)	XP_005798698	M3ZRK8
ENSXMAT00000025660	-	3479	-	ENSXMAP00000020766	1004 (aa)	-	-
ENSXMAT00000037225	-	2928	-	ENSXMAP00000029511	975 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000004799's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004799's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004799	mtrex	97	87.370	ENSG00000039123	MTREX	100	83.127	Homo_sapiens
ENSXMAG00000004799	mtrex	100	93.635	ENSAPOG00000007814	mtrex	100	93.635	Acanthochromis_polyacanthus
ENSXMAG00000004799	mtrex	100	83.143	ENSAMEG00000013856	MTREX	100	83.143	Ailuropoda_melanoleuca
ENSXMAG00000004799	mtrex	100	93.159	ENSACIG00000015117	mtrex	100	92.757	Amphilophus_citrinellus
ENSXMAG00000004799	mtrex	100	93.635	ENSAOCG00000011884	mtrex	100	93.635	Amphiprion_ocellaris
ENSXMAG00000004799	mtrex	100	93.539	ENSAPEG00000019384	mtrex	100	93.539	Amphiprion_percula
ENSXMAG00000004799	mtrex	100	93.443	ENSATEG00000015117	mtrex	100	93.443	Anabas_testudineus
ENSXMAG00000004799	mtrex	97	87.238	ENSAPLG00000009694	MTREX	98	86.925	Anas_platyrhynchos
ENSXMAG00000004799	mtrex	100	83.923	ENSACAG00000015200	MTREX	96	84.034	Anolis_carolinensis
ENSXMAG00000004799	mtrex	97	87.578	ENSANAG00000023095	MTREX	100	83.603	Aotus_nancymaae
ENSXMAG00000004799	mtrex	100	93.925	ENSACLG00000001921	mtrex	100	93.925	Astatotilapia_calliptera
ENSXMAG00000004799	mtrex	98	86.322	ENSAMXG00000018751	mtrex	99	86.032	Astyanax_mexicanus
ENSXMAG00000004799	mtrex	100	83.828	ENSBTAG00000010518	MTREX	100	83.413	Bos_taurus
ENSXMAG00000004799	mtrex	95	54.118	WBGene00012342	mtr-4	91	54.091	Caenorhabditis_elegans
ENSXMAG00000004799	mtrex	97	87.578	ENSCJAG00000001773	MTREX	100	83.128	Callithrix_jacchus
ENSXMAG00000004799	mtrex	100	83.286	ENSCAFG00000006818	MTREX	100	83.317	Canis_familiaris
ENSXMAG00000004799	mtrex	100	83.286	ENSCAFG00020024352	MTREX	100	83.317	Canis_lupus_dingo
ENSXMAG00000004799	mtrex	100	83.572	ENSCHIG00000024413	MTREX	100	83.222	Capra_hircus
ENSXMAG00000004799	mtrex	93	85.278	ENSTSYG00000007389	MTREX	100	85.278	Carlito_syrichta
ENSXMAG00000004799	mtrex	88	76.376	ENSCAPG00000008696	MTREX	92	76.376	Cavia_aperea
ENSXMAG00000004799	mtrex	100	83.508	ENSCPOG00000009797	MTREX	100	83.603	Cavia_porcellus
ENSXMAG00000004799	mtrex	97	87.578	ENSCCAG00000014177	MTREX	100	83.603	Cebus_capucinus
ENSXMAG00000004799	mtrex	97	87.474	ENSCATG00000042153	MTREX	100	83.317	Cercocebus_atys
ENSXMAG00000004799	mtrex	100	83.413	ENSCLAG00000006622	MTREX	100	83.508	Chinchilla_lanigera
ENSXMAG00000004799	mtrex	97	83.351	ENSCSAG00000016445	MTREX	100	79.468	Chlorocebus_sabaeus
ENSXMAG00000004799	mtrex	69	94.444	ENSCHOG00000010936	-	70	94.444	Choloepus_hoffmanni
ENSXMAG00000004799	mtrex	100	84.327	ENSCPBG00000026551	MTREX	94	84.327	Chrysemys_picta_bellii
ENSXMAG00000004799	mtrex	99	66.059	ENSCING00000003239	-	99	65.964	Ciona_intestinalis
ENSXMAG00000004799	mtrex	97	68.196	ENSCSAVG00000009304	-	100	69.099	Ciona_savignyi
ENSXMAG00000004799	mtrex	97	87.474	ENSCANG00000035770	MTREX	100	83.222	Colobus_angolensis_palliatus
ENSXMAG00000004799	mtrex	100	83.206	ENSCGRG00001024680	Mtrex	100	83.668	Cricetulus_griseus_chok1gshd
ENSXMAG00000004799	mtrex	100	83.206	ENSCGRG00000000307	Mtrex	100	83.668	Cricetulus_griseus_crigri
ENSXMAG00000004799	mtrex	100	91.610	ENSCSEG00000018621	mtrex	98	91.610	Cynoglossus_semilaevis
ENSXMAG00000004799	mtrex	100	95.946	ENSCVAG00000004556	mtrex	100	95.946	Cyprinodon_variegatus
ENSXMAG00000004799	mtrex	100	86.210	ENSDARG00000013457	mtrex	100	86.017	Danio_rerio
ENSXMAG00000004799	mtrex	99	86.462	ENSDNOG00000015375	MTREX	100	83.650	Dasypus_novemcinctus
ENSXMAG00000004799	mtrex	97	87.474	ENSDORG00000006782	Mtrex	100	83.603	Dipodomys_ordii
ENSXMAG00000004799	mtrex	95	67.093	FBgn0001986	Mtr4	97	62.888	Drosophila_melanogaster
ENSXMAG00000004799	mtrex	83	88.073	ENSETEG00000000727	MTREX	80	88.073	Echinops_telfairi
ENSXMAG00000004799	mtrex	99	73.088	ENSEBUG00000012869	mtrex	99	73.211	Eptatretus_burgeri
ENSXMAG00000004799	mtrex	100	83.190	ENSEASG00005013270	MTREX	100	83.413	Equus_asinus_asinus
ENSXMAG00000004799	mtrex	100	83.286	ENSECAG00000023723	MTREX	100	89.352	Equus_caballus
ENSXMAG00000004799	mtrex	93	87.375	ENSEEUG00000000527	MTREX	94	87.070	Erinaceus_europaeus
ENSXMAG00000004799	mtrex	100	89.468	ENSELUG00000004898	mtrex	100	90.976	Esox_lucius
ENSXMAG00000004799	mtrex	100	83.413	ENSFCAG00000010575	MTREX	100	83.413	Felis_catus
ENSXMAG00000004799	mtrex	97	86.192	ENSFALG00000010850	MTREX	100	82.885	Ficedula_albicollis
ENSXMAG00000004799	mtrex	100	83.031	ENSFDAG00000011199	MTREX	100	83.031	Fukomys_damarensis
ENSXMAG00000004799	mtrex	100	95.946	ENSFHEG00000023014	mtrex	100	92.775	Fundulus_heteroclitus
ENSXMAG00000004799	mtrex	100	85.632	ENSGMOG00000014702	mtrex	100	86.044	Gadus_morhua
ENSXMAG00000004799	mtrex	100	83.815	ENSGALG00000014709	MTREX	86	83.815	Gallus_gallus
ENSXMAG00000004799	mtrex	100	97.973	ENSGAFG00000012425	mtrex	100	97.973	Gambusia_affinis
ENSXMAG00000004799	mtrex	100	87.464	ENSGACG00000016260	mtrex	99	92.065	Gasterosteus_aculeatus
ENSXMAG00000004799	mtrex	100	84.231	ENSGAGG00000020036	MTREX	100	84.342	Gopherus_agassizii
ENSXMAG00000004799	mtrex	97	87.474	ENSGGOG00000001867	MTREX	100	83.222	Gorilla_gorilla
ENSXMAG00000004799	mtrex	100	93.925	ENSHBUG00000006229	mtrex	100	93.925	Haplochromis_burtoni
ENSXMAG00000004799	mtrex	97	87.265	ENSHGLG00000019445	SKIV2L2	100	83.222	Heterocephalus_glaber_female
ENSXMAG00000004799	mtrex	97	87.265	ENSHGLG00100011833	SKIV2L2	100	83.222	Heterocephalus_glaber_male
ENSXMAG00000004799	mtrex	96	89.297	ENSHCOG00000019995	mtrex	100	90.418	Hippocampus_comes
ENSXMAG00000004799	mtrex	100	85.852	ENSIPUG00000024348	skiv2l2	100	85.756	Ictalurus_punctatus
ENSXMAG00000004799	mtrex	100	83.381	ENSSTOG00000010802	MTREX	100	83.317	Ictidomys_tridecemlineatus
ENSXMAG00000004799	mtrex	100	78.963	ENSJJAG00000020975	Mtrex	100	78.963	Jaculus_jaculus
ENSXMAG00000004799	mtrex	100	94.444	ENSKMAG00000012642	mtrex	100	94.444	Kryptolebias_marmoratus
ENSXMAG00000004799	mtrex	100	92.960	ENSLBEG00000019367	mtrex	100	92.960	Labrus_bergylta
ENSXMAG00000004799	mtrex	100	85.385	ENSLACG00000009075	MTREX	100	85.207	Latimeria_chalumnae
ENSXMAG00000004799	mtrex	100	86.551	ENSLOCG00000010186	mtrex	100	86.551	Lepisosteus_oculatus
ENSXMAG00000004799	mtrex	99	81.358	ENSLAFG00000010497	MTREX	100	81.393	Loxodonta_africana
ENSXMAG00000004799	mtrex	97	87.474	ENSMFAG00000031610	MTREX	100	83.317	Macaca_fascicularis
ENSXMAG00000004799	mtrex	97	87.370	ENSMMUG00000010379	MTREX	100	83.159	Macaca_mulatta
ENSXMAG00000004799	mtrex	97	87.474	ENSMNEG00000032746	MTREX	100	83.317	Macaca_nemestrina
ENSXMAG00000004799	mtrex	97	87.474	ENSMLEG00000041051	MTREX	100	83.317	Mandrillus_leucophaeus
ENSXMAG00000004799	mtrex	100	92.850	ENSMAMG00000016753	mtrex	100	92.951	Mastacembelus_armatus
ENSXMAG00000004799	mtrex	100	93.925	ENSMZEG00005000414	mtrex	100	93.925	Maylandia_zebra
ENSXMAG00000004799	mtrex	99	62.193	ENSMGAG00000003980	MTREX	99	62.298	Meleagris_gallopavo
ENSXMAG00000004799	mtrex	100	83.302	ENSMAUG00000010727	Mtrex	100	83.302	Mesocricetus_auratus
ENSXMAG00000004799	mtrex	97	87.683	ENSMICG00000012779	MTREX	100	83.794	Microcebus_murinus
ENSXMAG00000004799	mtrex	97	87.370	ENSMOCG00000019886	Mtrex	100	83.477	Microtus_ochrogaster
ENSXMAG00000004799	mtrex	100	91.391	ENSMMOG00000002476	mtrex	100	91.291	Mola_mola
ENSXMAG00000004799	mtrex	100	83.654	ENSMODG00000019494	MTREX	100	83.958	Monodelphis_domestica
ENSXMAG00000004799	mtrex	100	87.251	ENSMALG00000002917	mtrex	99	89.490	Monopterus_albus
ENSXMAG00000004799	mtrex	100	83.636	MGP_CAROLIEiJ_G0018896	Mtrex	100	83.636	Mus_caroli
ENSXMAG00000004799	mtrex	100	83.541	ENSMUSG00000016018	Mtrex	100	83.541	Mus_musculus
ENSXMAG00000004799	mtrex	100	83.349	MGP_PahariEiJ_G0015967	Mtrex	100	83.349	Mus_pahari
ENSXMAG00000004799	mtrex	100	83.541	MGP_SPRETEiJ_G0019775	Mtrex	100	83.541	Mus_spretus
ENSXMAG00000004799	mtrex	100	83.286	ENSMPUG00000007619	MTREX	100	83.413	Mustela_putorius_furo
ENSXMAG00000004799	mtrex	100	82.762	ENSMLUG00000001152	MTREX	100	82.857	Myotis_lucifugus
ENSXMAG00000004799	mtrex	100	83.206	ENSNGAG00000011938	Mtrex	100	83.508	Nannospalax_galili
ENSXMAG00000004799	mtrex	100	93.732	ENSNBRG00000011293	mtrex	100	93.732	Neolamprologus_brichardi
ENSXMAG00000004799	mtrex	97	83.333	ENSNLEG00000001494	MTREX	100	79.448	Nomascus_leucogenys
ENSXMAG00000004799	mtrex	83	96.078	ENSMEUG00000006496	-	83	96.078	Notamacropus_eugenii
ENSXMAG00000004799	mtrex	98	72.709	ENSOPRG00000008009	MTREX	100	70.622	Ochotona_princeps
ENSXMAG00000004799	mtrex	100	82.999	ENSODEG00000017234	MTREX	100	82.841	Octodon_degus
ENSXMAG00000004799	mtrex	100	93.828	ENSONIG00000007587	mtrex	100	93.828	Oreochromis_niloticus
ENSXMAG00000004799	mtrex	51	83.757	ENSOANG00000004885	-	99	83.946	Ornithorhynchus_anatinus
ENSXMAG00000004799	mtrex	100	83.732	ENSOCUG00000004463	MTREX	100	83.508	Oryctolagus_cuniculus
ENSXMAG00000004799	mtrex	100	92.575	ENSORLG00000005443	mtrex	100	92.575	Oryzias_latipes
ENSXMAG00000004799	mtrex	100	92.478	ENSORLG00020006329	mtrex	100	92.478	Oryzias_latipes_hni
ENSXMAG00000004799	mtrex	100	92.382	ENSORLG00015012924	mtrex	100	92.382	Oryzias_latipes_hsok
ENSXMAG00000004799	mtrex	100	92.782	ENSOMEG00000008825	mtrex	100	92.782	Oryzias_melastigma
ENSXMAG00000004799	mtrex	100	83.668	ENSOGAG00000002886	MTREX	100	83.603	Otolemur_garnettii
ENSXMAG00000004799	mtrex	100	83.333	ENSOARG00000007764	MTREX	100	82.985	Ovis_aries
ENSXMAG00000004799	mtrex	97	87.474	ENSPPAG00000039291	MTREX	100	83.222	Pan_paniscus
ENSXMAG00000004799	mtrex	100	83.413	ENSPPRG00000019701	MTREX	100	83.413	Panthera_pardus
ENSXMAG00000004799	mtrex	100	81.983	ENSPTIG00000009313	MTREX	100	81.983	Panthera_tigris_altaica
ENSXMAG00000004799	mtrex	97	87.474	ENSPTRG00000016878	MTREX	100	83.222	Pan_troglodytes
ENSXMAG00000004799	mtrex	97	87.370	ENSPANG00000009697	MTREX	100	83.222	Papio_anubis
ENSXMAG00000004799	mtrex	100	86.162	ENSPKIG00000020833	mtrex	100	85.960	Paramormyrops_kingsleyae
ENSXMAG00000004799	mtrex	100	84.246	ENSPSIG00000012150	MTREX	100	84.342	Pelodiscus_sinensis
ENSXMAG00000004799	mtrex	100	90.030	ENSPMGG00000002582	mtrex	100	90.030	Periophthalmus_magnuspinnatus
ENSXMAG00000004799	mtrex	98	65.354	ENSPMAG00000009668	mtrex	100	65.222	Petromyzon_marinus
ENSXMAG00000004799	mtrex	96	88.068	ENSPCIG00000024730	MTREX	100	88.025	Phascolarctos_cinereus
ENSXMAG00000004799	mtrex	79	97.078	ENSPFOG00000003141	mtrex	100	98.729	Poecilia_formosa
ENSXMAG00000004799	mtrex	100	97.973	ENSPLAG00000021311	mtrex	100	97.973	Poecilia_latipinna
ENSXMAG00000004799	mtrex	97	98.312	ENSPMEG00000010597	mtrex	99	98.312	Poecilia_mexicana
ENSXMAG00000004799	mtrex	100	97.780	ENSPREG00000003089	mtrex	100	97.780	Poecilia_reticulata
ENSXMAG00000004799	mtrex	95	87.248	ENSPPYG00000015469	MTREX	98	82.946	Pongo_abelii
ENSXMAG00000004799	mtrex	94	73.953	ENSPCAG00000013120	MTREX	94	73.953	Procavia_capensis
ENSXMAG00000004799	mtrex	99	78.197	ENSPCOG00000018092	MTREX	100	77.975	Propithecus_coquereli
ENSXMAG00000004799	mtrex	100	83.477	ENSPVAG00000002445	MTREX	100	83.413	Pteropus_vampyrus
ENSXMAG00000004799	mtrex	100	93.828	ENSPNYG00000006164	mtrex	100	93.828	Pundamilia_nyererei
ENSXMAG00000004799	mtrex	100	87.199	ENSPNAG00000008794	mtrex	100	87.007	Pygocentrus_nattereri
ENSXMAG00000004799	mtrex	99	82.512	ENSRNOG00000010125	Mtrex	97	82.785	Rattus_norvegicus
ENSXMAG00000004799	mtrex	97	85.595	ENSRBIG00000034930	MTREX	100	81.506	Rhinopithecus_bieti
ENSXMAG00000004799	mtrex	97	87.474	ENSRROG00000039895	MTREX	100	83.222	Rhinopithecus_roxellana
ENSXMAG00000004799	mtrex	94	54.612	YJL050W	MTR4	94	53.333	Saccharomyces_cerevisiae
ENSXMAG00000004799	mtrex	97	87.578	ENSSBOG00000026693	MTREX	100	83.603	Saimiri_boliviensis_boliviensis
ENSXMAG00000004799	mtrex	98	87.060	ENSSHAG00000004600	MTREX	99	84.798	Sarcophilus_harrisii
ENSXMAG00000004799	mtrex	100	86.718	ENSSFOG00015014355	skiv2l2	100	86.622	Scleropages_formosus
ENSXMAG00000004799	mtrex	100	92.671	ENSSMAG00000007572	mtrex	100	92.671	Scophthalmus_maximus
ENSXMAG00000004799	mtrex	100	94.021	ENSSDUG00000023789	mtrex	100	94.021	Seriola_dumerili
ENSXMAG00000004799	mtrex	100	94.021	ENSSLDG00000006301	mtrex	100	94.021	Seriola_lalandi_dorsalis
ENSXMAG00000004799	mtrex	97	87.802	ENSSARG00000008387	MTREX	100	81.983	Sorex_araneus
ENSXMAG00000004799	mtrex	89	86.401	ENSSPUG00000007071	MTREX	96	86.401	Sphenodon_punctatus
ENSXMAG00000004799	mtrex	100	92.147	ENSSPAG00000011319	mtrex	100	92.147	Stegastes_partitus
ENSXMAG00000004799	mtrex	100	83.477	ENSSSCG00000016911	MTREX	100	83.413	Sus_scrofa
ENSXMAG00000004799	mtrex	100	82.115	ENSTGUG00000002480	MTREX	100	82.115	Taeniopygia_guttata
ENSXMAG00000004799	mtrex	100	91.032	ENSTRUG00000014571	mtrex	100	91.032	Takifugu_rubripes
ENSXMAG00000004799	mtrex	100	68.893	ENSTBEG00000007769	MTREX	100	69.113	Tupaia_belangeri
ENSXMAG00000004799	mtrex	100	83.445	ENSTTRG00000008678	MTREX	100	83.127	Tursiops_truncatus
ENSXMAG00000004799	mtrex	100	83.095	ENSUAMG00000023061	MTREX	100	83.222	Ursus_americanus
ENSXMAG00000004799	mtrex	97	87.198	ENSUMAG00000009373	MTREX	99	88.457	Ursus_maritimus
ENSXMAG00000004799	mtrex	100	74.261	ENSVPAG00000011174	MTREX	100	74.261	Vicugna_pacos
ENSXMAG00000004799	mtrex	100	83.381	ENSVVUG00000021337	MTREX	100	83.508	Vulpes_vulpes
ENSXMAG00000004799	mtrex	100	84.682	ENSXETG00000032798	MTREX	100	84.793	Xenopus_tropicalis