EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004827 (Gene tree)
Gene ID: 102229264
Gene Symbol: RNPS1
Alias: wu:fa19a11|zgc:65775
Full Name: RNA binding protein with serine rich domain 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 3460 bases
Position: chr16:12276903-12280362
Accession: 102229264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004834	RRM_1	PF00076.22	6.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004839	RNPS1-201	1190	XM_005809288	ENSXMAP00000004834	279 (aa)	XP_005809345	M3ZRJ1

Gene Model

Click here to download ENSXMAG00000004827's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004827's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004827	RNPS1	84	64.167	ENSG00000205937	RNPS1	85	67.635	Homo_sapiens
ENSXMAG00000004827	RNPS1	82	75.217	ENSAPOG00000017310	RNPS1	74	75.109	Acanthochromis_polyacanthus
ENSXMAG00000004827	RNPS1	77	70.093	ENSACIG00000014367	-	77	71.296	Amphilophus_citrinellus
ENSXMAG00000004827	RNPS1	82	75.758	ENSAOCG00000002404	RNPS1	83	77.489	Amphiprion_ocellaris
ENSXMAG00000004827	RNPS1	82	75.652	ENSAPEG00000006497	RNPS1	80	77.391	Amphiprion_percula
ENSXMAG00000004827	RNPS1	82	76.190	ENSATEG00000024267	RNPS1	83	78.355	Anabas_testudineus
ENSXMAG00000004827	RNPS1	84	63.750	ENSANAG00000028802	RNPS1	85	69.710	Aotus_nancymaae
ENSXMAG00000004827	RNPS1	82	77.826	ENSACLG00000025942	RNPS1	82	75.217	Astatotilapia_calliptera
ENSXMAG00000004827	RNPS1	82	66.234	ENSACLG00000021537	-	86	70.130	Astatotilapia_calliptera
ENSXMAG00000004827	RNPS1	82	76.824	ENSAMXG00000006330	-	82	69.528	Astyanax_mexicanus
ENSXMAG00000004827	RNPS1	85	64.198	ENSBTAG00000009969	RNPS1	86	67.623	Bos_taurus
ENSXMAG00000004827	RNPS1	84	64.167	ENSCJAG00000014969	RNPS1	90	64.186	Callithrix_jacchus
ENSXMAG00000004827	RNPS1	84	64.167	ENSTSYG00000001629	RNPS1	85	67.635	Carlito_syrichta
ENSXMAG00000004827	RNPS1	84	64.167	ENSCPOG00000002066	RNPS1	85	67.635	Cavia_porcellus
ENSXMAG00000004827	RNPS1	84	63.750	ENSCCAG00000034480	RNPS1	85	69.710	Cebus_capucinus
ENSXMAG00000004827	RNPS1	84	64.167	ENSCATG00000013756	RNPS1	85	67.635	Cercocebus_atys
ENSXMAG00000004827	RNPS1	93	60.985	ENSCATG00000042361	-	57	77.778	Cercocebus_atys
ENSXMAG00000004827	RNPS1	84	64.167	ENSCLAG00000015546	RNPS1	85	67.635	Chinchilla_lanigera
ENSXMAG00000004827	RNPS1	97	70.290	ENSCSAG00000005219	-	81	66.805	Chlorocebus_sabaeus
ENSXMAG00000004827	RNPS1	75	48.826	ENSCPBG00000000214	RNPS1	74	51.852	Chrysemys_picta_bellii
ENSXMAG00000004827	RNPS1	84	64.167	ENSCANG00000041307	RNPS1	85	67.635	Colobus_angolensis_palliatus
ENSXMAG00000004827	RNPS1	84	64.167	ENSCGRG00001020431	Rnps1	85	67.635	Cricetulus_griseus_chok1gshd
ENSXMAG00000004827	RNPS1	76	63.426	ENSCGRG00000014021	Rnps1	77	67.281	Cricetulus_griseus_crigri
ENSXMAG00000004827	RNPS1	82	76.623	ENSCSEG00000000402	RNPS1	76	69.697	Cynoglossus_semilaevis
ENSXMAG00000004827	RNPS1	82	74.783	ENSCSEG00000015997	RNPS1	80	75.652	Cynoglossus_semilaevis
ENSXMAG00000004827	RNPS1	100	97.143	ENSCVAG00000010868	RNPS1	100	97.143	Cyprinodon_variegatus
ENSXMAG00000004827	RNPS1	82	66.239	ENSDARG00000100188	RNPS1	83	70.513	Danio_rerio
ENSXMAG00000004827	RNPS1	82	66.239	ENSDARG00000116743	rnps1	83	70.513	Danio_rerio
ENSXMAG00000004827	RNPS1	84	63.750	ENSDORG00000001755	Rnps1	85	69.710	Dipodomys_ordii
ENSXMAG00000004827	RNPS1	84	64.583	ENSFCAG00000007690	RNPS1	85	68.050	Felis_catus
ENSXMAG00000004827	RNPS1	84	63.750	ENSFDAG00000003386	RNPS1	85	67.220	Fukomys_damarensis
ENSXMAG00000004827	RNPS1	100	96.085	ENSFHEG00000011705	RNPS1	100	96.085	Fundulus_heteroclitus
ENSXMAG00000004827	RNPS1	100	99.286	ENSGAFG00000005457	RNPS1	100	99.286	Gambusia_affinis
ENSXMAG00000004827	RNPS1	82	78.017	ENSGACG00000011261	RNPS1	83	85.776	Gasterosteus_aculeatus
ENSXMAG00000004827	RNPS1	82	65.948	ENSGACG00000005641	-	82	66.810	Gasterosteus_aculeatus
ENSXMAG00000004827	RNPS1	84	64.167	ENSGGOG00000014275	RNPS1	85	67.635	Gorilla_gorilla
ENSXMAG00000004827	RNPS1	82	77.391	ENSHBUG00000002494	RNPS1	82	74.783	Haplochromis_burtoni
ENSXMAG00000004827	RNPS1	82	66.234	ENSHBUG00000017337	-	82	70.130	Haplochromis_burtoni
ENSXMAG00000004827	RNPS1	84	64.167	ENSHGLG00000013957	RNPS1	85	67.635	Heterocephalus_glaber_female
ENSXMAG00000004827	RNPS1	75	57.277	ENSHGLG00000013666	-	72	60.094	Heterocephalus_glaber_female
ENSXMAG00000004827	RNPS1	76	70.046	ENSHGLG00000006292	-	87	66.820	Heterocephalus_glaber_female
ENSXMAG00000004827	RNPS1	84	64.167	ENSHGLG00100003539	RNPS1	85	67.635	Heterocephalus_glaber_male
ENSXMAG00000004827	RNPS1	84	65.417	ENSHGLG00100001721	-	78	61.925	Heterocephalus_glaber_male
ENSXMAG00000004827	RNPS1	75	57.277	ENSHGLG00100011327	-	72	60.094	Heterocephalus_glaber_male
ENSXMAG00000004827	RNPS1	82	80.932	ENSHCOG00000004424	RNPS1	83	82.203	Hippocampus_comes
ENSXMAG00000004827	RNPS1	84	64.167	ENSJJAG00000015576	-	85	67.635	Jaculus_jaculus
ENSXMAG00000004827	RNPS1	82	93.043	ENSKMAG00000009135	RNPS1	82	93.043	Kryptolebias_marmoratus
ENSXMAG00000004827	RNPS1	75	74.286	ENSLBEG00000024091	RNPS1	77	74.766	Labrus_bergylta
ENSXMAG00000004827	RNPS1	82	66.094	ENSLOCG00000001758	RNPS1	83	66.094	Lepisosteus_oculatus
ENSXMAG00000004827	RNPS1	84	65.833	ENSMFAG00000044121	-	83	61.411	Macaca_fascicularis
ENSXMAG00000004827	RNPS1	84	64.167	ENSMFAG00000042142	RNPS1	85	67.635	Macaca_fascicularis
ENSXMAG00000004827	RNPS1	84	64.167	ENSMLEG00000036928	RNPS1	85	67.635	Mandrillus_leucophaeus
ENSXMAG00000004827	RNPS1	72	63.942	ENSMLEG00000040232	-	83	63.551	Mandrillus_leucophaeus
ENSXMAG00000004827	RNPS1	82	78.355	ENSMAMG00000021609	-	83	80.519	Mastacembelus_armatus
ENSXMAG00000004827	RNPS1	82	78.355	ENSMAMG00000021148	-	81	74.026	Mastacembelus_armatus
ENSXMAG00000004827	RNPS1	82	66.379	ENSMZEG00005006256	-	83	70.259	Maylandia_zebra
ENSXMAG00000004827	RNPS1	82	77.826	ENSMZEG00005012742	RNPS1	82	75.217	Maylandia_zebra
ENSXMAG00000004827	RNPS1	84	63.750	ENSMICG00000031543	RNPS1	85	67.220	Microcebus_murinus
ENSXMAG00000004827	RNPS1	96	56.727	ENSMOCG00000000276	-	67	53.991	Microtus_ochrogaster
ENSXMAG00000004827	RNPS1	84	64.167	ENSMOCG00000003429	Rnps1	85	67.635	Microtus_ochrogaster
ENSXMAG00000004827	RNPS1	76	74.057	ENSMMOG00000010863	RNPS1	77	74.766	Mola_mola
ENSXMAG00000004827	RNPS1	84	67.635	ENSMODG00000015891	RNPS1	78	66.250	Monodelphis_domestica
ENSXMAG00000004827	RNPS1	84	64.167	ENSMUSG00000034681	Rnps1	85	67.635	Mus_musculus
ENSXMAG00000004827	RNPS1	84	64.167	MGP_PahariEiJ_G0023498	Rnps1	85	67.635	Mus_pahari
ENSXMAG00000004827	RNPS1	84	64.167	MGP_SPRETEiJ_G0022092	Rnps1	85	67.635	Mus_spretus
ENSXMAG00000004827	RNPS1	84	64.167	ENSNGAG00000023702	Rnps1	85	67.635	Nannospalax_galili
ENSXMAG00000004827	RNPS1	82	66.379	ENSNBRG00000014540	-	85	70.259	Neolamprologus_brichardi
ENSXMAG00000004827	RNPS1	77	74.299	ENSNBRG00000023437	RNPS1	77	74.766	Neolamprologus_brichardi
ENSXMAG00000004827	RNPS1	87	64.400	ENSNLEG00000009243	RNPS1	98	66.122	Nomascus_leucogenys
ENSXMAG00000004827	RNPS1	60	53.892	ENSODEG00000002513	-	52	48.739	Octodon_degus
ENSXMAG00000004827	RNPS1	82	66.379	ENSONIG00000019627	-	83	70.259	Oreochromis_niloticus
ENSXMAG00000004827	RNPS1	82	76.522	ENSORLG00000008033	RNPS1	94	70.244	Oryzias_latipes
ENSXMAG00000004827	RNPS1	82	76.419	ENSORLG00020020207	RNPS1	82	71.179	Oryzias_latipes_hni
ENSXMAG00000004827	RNPS1	82	63.043	ENSORLG00015011183	RNPS1	72	67.965	Oryzias_latipes_hsok
ENSXMAG00000004827	RNPS1	82	76.856	ENSORLG00015000305	-	82	71.616	Oryzias_latipes_hsok
ENSXMAG00000004827	RNPS1	87	60.729	ENSPPAG00000011845	RNPS1	86	65.560	Pan_paniscus
ENSXMAG00000004827	RNPS1	84	64.583	ENSPPRG00000011255	RNPS1	85	68.050	Panthera_pardus
ENSXMAG00000004827	RNPS1	58	62.577	ENSPTIG00000015643	RNPS1	65	77.419	Panthera_tigris_altaica
ENSXMAG00000004827	RNPS1	84	64.167	ENSPTRG00000031310	RNPS1	85	67.635	Pan_troglodytes
ENSXMAG00000004827	RNPS1	84	64.167	ENSPANG00000015748	RNPS1	85	67.635	Papio_anubis
ENSXMAG00000004827	RNPS1	82	72.766	ENSPKIG00000023465	RNPS1	83	69.362	Paramormyrops_kingsleyae
ENSXMAG00000004827	RNPS1	68	71.958	ENSPMGG00000015888	-	77	73.364	Periophthalmus_magnuspinnatus
ENSXMAG00000004827	RNPS1	84	64.167	ENSPEMG00000012797	Rnps1	85	67.635	Peromyscus_maniculatus_bairdii
ENSXMAG00000004827	RNPS1	84	63.750	ENSPCIG00000025012	RNPS1	85	70.124	Phascolarctos_cinereus
ENSXMAG00000004827	RNPS1	58	66.258	ENSPCIG00000016114	-	60	75.806	Phascolarctos_cinereus
ENSXMAG00000004827	RNPS1	100	99.286	ENSPFOG00000009978	RNPS1	100	99.286	Poecilia_formosa
ENSXMAG00000004827	RNPS1	100	99.286	ENSPLAG00000009343	RNPS1	100	99.286	Poecilia_latipinna
ENSXMAG00000004827	RNPS1	100	99.286	ENSPMEG00000008552	RNPS1	100	99.286	Poecilia_mexicana
ENSXMAG00000004827	RNPS1	100	99.286	ENSPREG00000001843	RNPS1	100	99.286	Poecilia_reticulata
ENSXMAG00000004827	RNPS1	84	63.750	ENSPCOG00000005478	RNPS1	85	67.220	Propithecus_coquereli
ENSXMAG00000004827	RNPS1	82	77.826	ENSPNYG00000000585	RNPS1	82	75.217	Pundamilia_nyererei
ENSXMAG00000004827	RNPS1	82	76.824	ENSPNAG00000025479	RNPS1	82	69.957	Pygocentrus_nattereri
ENSXMAG00000004827	RNPS1	84	64.167	ENSRROG00000041252	RNPS1	85	67.635	Rhinopithecus_roxellana
ENSXMAG00000004827	RNPS1	84	64.167	ENSSBOG00000027927	RNPS1	85	67.635	Saimiri_boliviensis_boliviensis
ENSXMAG00000004827	RNPS1	82	77.586	ENSSFOG00015019341	-	73	77.586	Scleropages_formosus
ENSXMAG00000004827	RNPS1	82	77.872	ENSSFOG00015022746	RNPS1	85	73.617	Scleropages_formosus
ENSXMAG00000004827	RNPS1	82	80.000	ENSSMAG00000016933	RNPS1	82	78.261	Scophthalmus_maximus
ENSXMAG00000004827	RNPS1	82	77.922	ENSSDUG00000011453	RNPS1	83	80.087	Seriola_dumerili
ENSXMAG00000004827	RNPS1	80	77.578	ENSSLDG00000021341	RNPS1	81	77.578	Seriola_lalandi_dorsalis
ENSXMAG00000004827	RNPS1	82	75.325	ENSSPAG00000009383	RNPS1	83	77.489	Stegastes_partitus
ENSXMAG00000004827	RNPS1	84	63.598	ENSTGUG00000003237	RNPS1	84	67.083	Taeniopygia_guttata
ENSXMAG00000004827	RNPS1	82	72.103	ENSTRUG00000008602	RNPS1	83	82.403	Takifugu_rubripes
ENSXMAG00000004827	RNPS1	82	72.845	ENSTNIG00000009753	RNPS1	81	75.431	Tetraodon_nigroviridis
ENSXMAG00000004827	RNPS1	80	68.831	ENSXETG00000024439	rnps1	71	68.349	Xenopus_tropicalis