EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004888 (Gene tree)
Gene ID: 102232966
Gene Symbol: ssb
Alias: wu:fb17f11
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 6839 bases
Position: chr7:15657627-15664465
Accession: 102232966
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000004905	RRM_1	PF00076.22	7.3e-12	1	1
ENSXMAP00000004905	RRM_3	PF08777.11	1.4e-27	1	1
ENSXMAP00000004905	La	PF05383.17	5.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004910	-	3650	XM_005799341	ENSXMAP00000004905	403 (aa)	XP_005799398	M3ZRR2

Gene Model

Click here to download ENSXMAG00000004888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004888	ssb	100	55.257	ENSG00000138385	SSB	98	61.864	Homo_sapiens
ENSXMAG00000004888	ssb	100	80.149	ENSAPOG00000003448	ssb	100	80.149	Acanthochromis_polyacanthus
ENSXMAG00000004888	ssb	100	54.177	ENSAMEG00000010507	SSB	99	54.177	Ailuropoda_melanoleuca
ENSXMAG00000004888	ssb	92	78.649	ENSACIG00000001738	ssb	96	78.649	Amphilophus_citrinellus
ENSXMAG00000004888	ssb	100	80.149	ENSAOCG00000020398	ssb	100	80.149	Amphiprion_ocellaris
ENSXMAG00000004888	ssb	100	80.149	ENSAPEG00000020395	ssb	100	80.149	Amphiprion_percula
ENSXMAG00000004888	ssb	100	81.638	ENSATEG00000016884	ssb	100	81.638	Anabas_testudineus
ENSXMAG00000004888	ssb	100	52.941	ENSAPLG00000006109	SSB	99	53.066	Anas_platyrhynchos
ENSXMAG00000004888	ssb	100	54.501	ENSACAG00000017008	SSB	99	54.501	Anolis_carolinensis
ENSXMAG00000004888	ssb	100	49.754	ENSANAG00000027195	-	99	48.900	Aotus_nancymaae
ENSXMAG00000004888	ssb	100	72.772	ENSACLG00000010798	ssb	100	72.772	Astatotilapia_calliptera
ENSXMAG00000004888	ssb	100	60.976	ENSAMXG00000012606	ssb	100	61.220	Astyanax_mexicanus
ENSXMAG00000004888	ssb	100	56.757	ENSBTAG00000008716	SSB	99	56.158	Bos_taurus
ENSXMAG00000004888	ssb	74	34.098	WBGene00016653	C44E4.4	76	35.410	Caenorhabditis_elegans
ENSXMAG00000004888	ssb	100	55.911	ENSCJAG00000045073	SSB	99	55.665	Callithrix_jacchus
ENSXMAG00000004888	ssb	100	56.265	ENSCAFG00000012418	SSB	99	56.020	Canis_familiaris
ENSXMAG00000004888	ssb	100	56.265	ENSCAFG00020002900	SSB	99	56.020	Canis_lupus_dingo
ENSXMAG00000004888	ssb	100	56.158	ENSCHIG00000022624	-	99	55.911	Capra_hircus
ENSXMAG00000004888	ssb	100	52.956	ENSCHIG00000022196	-	99	52.463	Capra_hircus
ENSXMAG00000004888	ssb	99	56.296	ENSTSYG00000000097	SSB	99	56.049	Carlito_syrichta
ENSXMAG00000004888	ssb	100	57.143	ENSCPOG00000003338	SSB	99	56.897	Cavia_porcellus
ENSXMAG00000004888	ssb	100	55.419	ENSCCAG00000035147	SSB	99	55.172	Cebus_capucinus
ENSXMAG00000004888	ssb	72	51.546	ENSCATG00000036701	SSB	83	51.203	Cercocebus_atys
ENSXMAG00000004888	ssb	98	41.562	ENSCATG00000042909	-	96	41.310	Cercocebus_atys
ENSXMAG00000004888	ssb	100	56.404	ENSCLAG00000015617	-	99	56.158	Chinchilla_lanigera
ENSXMAG00000004888	ssb	100	55.911	ENSCSAG00000015200	SSB	88	55.665	Chlorocebus_sabaeus
ENSXMAG00000004888	ssb	99	51.372	ENSCSAG00000018390	-	100	51.122	Chlorocebus_sabaeus
ENSXMAG00000004888	ssb	100	55.911	ENSCHOG00000007763	SSB	99	55.665	Choloepus_hoffmanni
ENSXMAG00000004888	ssb	100	59.024	ENSCPBG00000006519	SSB	99	59.322	Chrysemys_picta_bellii
ENSXMAG00000004888	ssb	94	44.211	ENSCANG00000028838	-	89	43.947	Colobus_angolensis_palliatus
ENSXMAG00000004888	ssb	100	55.911	ENSCANG00000027695	SSB	99	55.665	Colobus_angolensis_palliatus
ENSXMAG00000004888	ssb	100	48.276	ENSCANG00000033240	-	99	48.030	Colobus_angolensis_palliatus
ENSXMAG00000004888	ssb	100	50.611	ENSCGRG00001024831	Ssb	99	51.345	Cricetulus_griseus_chok1gshd
ENSXMAG00000004888	ssb	100	50.611	ENSCGRG00000005387	Ssb	99	51.345	Cricetulus_griseus_crigri
ENSXMAG00000004888	ssb	99	80.605	ENSCSEG00000011599	ssb	99	80.605	Cynoglossus_semilaevis
ENSXMAG00000004888	ssb	100	84.901	ENSCVAG00000021558	ssb	100	88.614	Cyprinodon_variegatus
ENSXMAG00000004888	ssb	100	63.725	ENSDARG00000029252	ssb	100	62.500	Danio_rerio
ENSXMAG00000004888	ssb	100	56.158	ENSDNOG00000013450	SSB	99	55.911	Dasypus_novemcinctus
ENSXMAG00000004888	ssb	100	51.707	ENSDORG00000005543	Ssb	99	51.707	Dipodomys_ordii
ENSXMAG00000004888	ssb	84	34.746	FBgn0011638	La	80	34.557	Drosophila_melanogaster
ENSXMAG00000004888	ssb	50	62.871	ENSETEG00000004614	-	52	62.871	Echinops_telfairi
ENSXMAG00000004888	ssb	98	45.477	ENSEBUG00000001237	ssb	96	45.088	Eptatretus_burgeri
ENSXMAG00000004888	ssb	100	56.650	ENSEASG00005022835	SSB	99	56.404	Equus_asinus_asinus
ENSXMAG00000004888	ssb	100	56.650	ENSECAG00000018495	SSB	99	56.404	Equus_caballus
ENSXMAG00000004888	ssb	76	46.753	ENSEEUG00000008077	SSB	78	46.753	Erinaceus_europaeus
ENSXMAG00000004888	ssb	100	69.704	ENSELUG00000020929	ssb	100	67.241	Esox_lucius
ENSXMAG00000004888	ssb	100	57.002	ENSFCAG00000011601	SSB	99	56.757	Felis_catus
ENSXMAG00000004888	ssb	99	56.235	ENSFALG00000000930	SSB	99	56.479	Ficedula_albicollis
ENSXMAG00000004888	ssb	100	56.650	ENSFDAG00000000598	SSB	99	56.404	Fukomys_damarensis
ENSXMAG00000004888	ssb	74	82.450	ENSFHEG00000003268	ssb	97	81.587	Fundulus_heteroclitus
ENSXMAG00000004888	ssb	99	70.617	ENSGMOG00000002664	ssb	100	70.617	Gadus_morhua
ENSXMAG00000004888	ssb	99	55.746	ENSGALG00000009677	SSB	99	54.523	Gallus_gallus
ENSXMAG00000004888	ssb	100	95.782	ENSGAFG00000002749	ssb	100	95.782	Gambusia_affinis
ENSXMAG00000004888	ssb	100	75.061	ENSGACG00000005107	ssb	100	75.061	Gasterosteus_aculeatus
ENSXMAG00000004888	ssb	100	58.537	ENSGAGG00000007807	SSB	99	58.838	Gopherus_agassizii
ENSXMAG00000004888	ssb	100	47.044	ENSGGOG00000024891	-	99	46.552	Gorilla_gorilla
ENSXMAG00000004888	ssb	54	52.489	ENSGGOG00000023471	-	89	52.036	Gorilla_gorilla
ENSXMAG00000004888	ssb	100	72.772	ENSHBUG00000006584	ssb	100	72.772	Haplochromis_burtoni
ENSXMAG00000004888	ssb	100	50.980	ENSHGLG00000004478	-	99	50.735	Heterocephalus_glaber_female
ENSXMAG00000004888	ssb	97	51.777	ENSHGLG00000005832	-	99	51.523	Heterocephalus_glaber_female
ENSXMAG00000004888	ssb	100	56.311	ENSHGLG00000017580	-	99	55.718	Heterocephalus_glaber_female
ENSXMAG00000004888	ssb	100	56.311	ENSHGLG00100003084	-	99	55.718	Heterocephalus_glaber_male
ENSXMAG00000004888	ssb	100	50.493	ENSHGLG00100008767	-	99	50.246	Heterocephalus_glaber_male
ENSXMAG00000004888	ssb	99	74.055	ENSHCOG00000019011	ssb	99	74.055	Hippocampus_comes
ENSXMAG00000004888	ssb	100	62.864	ENSIPUG00000003681	SSB	100	61.408	Ictalurus_punctatus
ENSXMAG00000004888	ssb	100	55.911	ENSSTOG00000008416	SSB	99	55.172	Ictidomys_tridecemlineatus
ENSXMAG00000004888	ssb	100	49.882	ENSJJAG00000023158	-	99	49.882	Jaculus_jaculus
ENSXMAG00000004888	ssb	89	44.628	ENSJJAG00000016250	-	94	44.321	Jaculus_jaculus
ENSXMAG00000004888	ssb	100	83.127	ENSKMAG00000017317	ssb	100	83.127	Kryptolebias_marmoratus
ENSXMAG00000004888	ssb	100	80.397	ENSLBEG00000017345	ssb	100	80.397	Labrus_bergylta
ENSXMAG00000004888	ssb	100	53.790	ENSLACG00000014056	SSB	99	53.790	Latimeria_chalumnae
ENSXMAG00000004888	ssb	100	66.015	ENSLOCG00000007933	ssb	99	66.015	Lepisosteus_oculatus
ENSXMAG00000004888	ssb	73	43.051	ENSLAFG00000026721	-	97	43.051	Loxodonta_africana
ENSXMAG00000004888	ssb	100	52.732	ENSLAFG00000000867	-	99	52.732	Loxodonta_africana
ENSXMAG00000004888	ssb	100	47.901	ENSLAFG00000028909	-	99	47.160	Loxodonta_africana
ENSXMAG00000004888	ssb	100	55.911	ENSMFAG00000039066	SSB	99	55.665	Macaca_fascicularis
ENSXMAG00000004888	ssb	89	48.753	ENSMFAG00000041478	-	91	51.064	Macaca_fascicularis
ENSXMAG00000004888	ssb	98	41.058	ENSMMUG00000039889	-	97	41.310	Macaca_mulatta
ENSXMAG00000004888	ssb	100	47.666	ENSMMUG00000011724	-	97	47.666	Macaca_mulatta
ENSXMAG00000004888	ssb	100	55.911	ENSMMUG00000023051	SSB	99	55.665	Macaca_mulatta
ENSXMAG00000004888	ssb	89	48.753	ENSMNEG00000034698	-	91	51.064	Macaca_nemestrina
ENSXMAG00000004888	ssb	100	48.293	ENSMNEG00000028321	SSB	85	66.957	Macaca_nemestrina
ENSXMAG00000004888	ssb	100	39.163	ENSMLEG00000042644	-	99	38.670	Mandrillus_leucophaeus
ENSXMAG00000004888	ssb	100	55.911	ENSMLEG00000035717	SSB	88	66.957	Mandrillus_leucophaeus
ENSXMAG00000004888	ssb	100	80.893	ENSMAMG00000004800	ssb	100	80.893	Mastacembelus_armatus
ENSXMAG00000004888	ssb	100	72.772	ENSMZEG00005005749	ssb	100	72.772	Maylandia_zebra
ENSXMAG00000004888	ssb	99	56.235	ENSMGAG00000010328	SSB	95	61.929	Meleagris_gallopavo
ENSXMAG00000004888	ssb	100	56.158	ENSMICG00000028252	-	99	55.911	Microcebus_murinus
ENSXMAG00000004888	ssb	99	50.125	ENSMICG00000033304	-	93	53.533	Microcebus_murinus
ENSXMAG00000004888	ssb	93	55.469	ENSMODG00000008227	-	99	53.623	Monodelphis_domestica
ENSXMAG00000004888	ssb	100	41.872	ENSMODG00000007027	-	99	44.089	Monodelphis_domestica
ENSXMAG00000004888	ssb	100	40.741	ENSMODG00000019271	-	99	45.679	Monodelphis_domestica
ENSXMAG00000004888	ssb	91	75.749	ENSMALG00000008045	ssb	90	77.333	Monopterus_albus
ENSXMAG00000004888	ssb	100	51.190	MGP_CAROLIEiJ_G0023629	-	98	61.146	Mus_caroli
ENSXMAG00000004888	ssb	100	50.714	ENSMUSG00000068882	Ssb	98	61.146	Mus_musculus
ENSXMAG00000004888	ssb	100	50.476	MGP_PahariEiJ_G0025081	-	98	60.510	Mus_pahari
ENSXMAG00000004888	ssb	100	50.714	MGP_SPRETEiJ_G0024551	Ssb	98	61.146	Mus_spretus
ENSXMAG00000004888	ssb	100	56.897	ENSMPUG00000000785	SSB	99	56.650	Mustela_putorius_furo
ENSXMAG00000004888	ssb	100	55.024	ENSMLUG00000016316	SSB	99	54.785	Myotis_lucifugus
ENSXMAG00000004888	ssb	100	72.525	ENSNBRG00000012661	ssb	100	72.525	Neolamprologus_brichardi
ENSXMAG00000004888	ssb	100	39.803	ENSNLEG00000028754	-	78	44.578	Nomascus_leucogenys
ENSXMAG00000004888	ssb	100	55.665	ENSNLEG00000004958	SSB	99	55.419	Nomascus_leucogenys
ENSXMAG00000004888	ssb	62	60.800	ENSMEUG00000001650	-	100	60.800	Notamacropus_eugenii
ENSXMAG00000004888	ssb	51	53.503	ENSOPRG00000008475	-	54	53.503	Ochotona_princeps
ENSXMAG00000004888	ssb	94	55.026	ENSODEG00000004202	-	99	54.762	Octodon_degus
ENSXMAG00000004888	ssb	100	73.515	ENSONIG00000008776	ssb	100	73.515	Oreochromis_niloticus
ENSXMAG00000004888	ssb	100	55.172	ENSOANG00000008543	SSB	99	55.172	Ornithorhynchus_anatinus
ENSXMAG00000004888	ssb	100	55.665	ENSOCUG00000010396	SSB	99	55.419	Oryctolagus_cuniculus
ENSXMAG00000004888	ssb	100	78.908	ENSORLG00000017208	ssb	100	78.908	Oryzias_latipes
ENSXMAG00000004888	ssb	100	79.156	ENSORLG00020022574	ssb	100	79.653	Oryzias_latipes_hni
ENSXMAG00000004888	ssb	100	79.653	ENSORLG00015016592	ssb	100	79.404	Oryzias_latipes_hsok
ENSXMAG00000004888	ssb	100	79.404	ENSOMEG00000003193	ssb	100	79.653	Oryzias_melastigma
ENSXMAG00000004888	ssb	100	53.207	ENSOGAG00000029768	SSB	99	52.969	Otolemur_garnettii
ENSXMAG00000004888	ssb	100	56.158	ENSOARG00000002906	SSB	99	55.911	Ovis_aries
ENSXMAG00000004888	ssb	90	46.685	ENSPPAG00000006189	-	91	44.751	Pan_paniscus
ENSXMAG00000004888	ssb	100	55.257	ENSPPAG00000042673	SSB	99	55.012	Pan_paniscus
ENSXMAG00000004888	ssb	100	47.537	ENSPPAG00000032427	-	100	57.364	Pan_paniscus
ENSXMAG00000004888	ssb	100	57.002	ENSPPRG00000006599	SSB	99	56.757	Panthera_pardus
ENSXMAG00000004888	ssb	100	57.002	ENSPTIG00000011021	SSB	97	56.757	Panthera_tigris_altaica
ENSXMAG00000004888	ssb	100	44.828	ENSPTRG00000042880	-	99	44.581	Pan_troglodytes
ENSXMAG00000004888	ssb	100	55.257	ENSPTRG00000012620	SSB	99	55.012	Pan_troglodytes
ENSXMAG00000004888	ssb	98	40.806	ENSPANG00000034126	-	96	40.554	Papio_anubis
ENSXMAG00000004888	ssb	100	55.911	ENSPANG00000007440	SSB	99	55.665	Papio_anubis
ENSXMAG00000004888	ssb	98	38.384	ENSPANG00000031877	-	93	37.121	Papio_anubis
ENSXMAG00000004888	ssb	100	67.734	ENSPKIG00000019325	ssb	99	67.734	Paramormyrops_kingsleyae
ENSXMAG00000004888	ssb	100	58.537	ENSPSIG00000002265	SSB	93	58.780	Pelodiscus_sinensis
ENSXMAG00000004888	ssb	85	68.805	ENSPMGG00000020075	ssb	92	69.209	Periophthalmus_magnuspinnatus
ENSXMAG00000004888	ssb	88	45.205	ENSPMAG00000002982	ssb	87	45.596	Petromyzon_marinus
ENSXMAG00000004888	ssb	100	55.911	ENSPCIG00000028591	-	99	55.911	Phascolarctos_cinereus
ENSXMAG00000004888	ssb	100	93.797	ENSPFOG00000009650	ssb	100	93.797	Poecilia_formosa
ENSXMAG00000004888	ssb	100	92.804	ENSPLAG00000020498	ssb	100	94.293	Poecilia_latipinna
ENSXMAG00000004888	ssb	100	93.548	ENSPMEG00000001051	ssb	100	93.548	Poecilia_mexicana
ENSXMAG00000004888	ssb	94	94.695	ENSPREG00000003708	ssb	99	93.947	Poecilia_reticulata
ENSXMAG00000004888	ssb	100	55.665	ENSPPYG00000012919	SSB	99	55.419	Pongo_abelii
ENSXMAG00000004888	ssb	95	54.948	ENSPCAG00000010276	SSB	99	54.948	Procavia_capensis
ENSXMAG00000004888	ssb	100	50.246	ENSPCOG00000023189	-	99	50.000	Propithecus_coquereli
ENSXMAG00000004888	ssb	100	54.680	ENSPCOG00000015741	-	92	65.517	Propithecus_coquereli
ENSXMAG00000004888	ssb	88	57.865	ENSPVAG00000006615	SSB	99	57.584	Pteropus_vampyrus
ENSXMAG00000004888	ssb	100	72.772	ENSPNYG00000006444	ssb	100	72.772	Pundamilia_nyererei
ENSXMAG00000004888	ssb	100	61.220	ENSPNAG00000011708	ssb	100	59.512	Pygocentrus_nattereri
ENSXMAG00000004888	ssb	100	50.238	ENSRNOG00000007998	Ssb	99	50.238	Rattus_norvegicus
ENSXMAG00000004888	ssb	100	50.614	ENSRNOG00000011606	AABR07061825.1	99	51.106	Rattus_norvegicus
ENSXMAG00000004888	ssb	98	40.452	ENSRBIG00000029918	-	96	40.201	Rhinopithecus_bieti
ENSXMAG00000004888	ssb	100	48.537	ENSRBIG00000041972	SSB	88	66.957	Rhinopithecus_bieti
ENSXMAG00000004888	ssb	94	47.632	ENSRBIG00000041232	-	98	47.368	Rhinopithecus_bieti
ENSXMAG00000004888	ssb	87	51.714	ENSRBIG00000041608	-	94	48.739	Rhinopithecus_bieti
ENSXMAG00000004888	ssb	100	55.911	ENSRROG00000040346	SSB	99	55.665	Rhinopithecus_roxellana
ENSXMAG00000004888	ssb	98	45.477	ENSRROG00000007149	-	97	45.226	Rhinopithecus_roxellana
ENSXMAG00000004888	ssb	98	47.859	ENSRROG00000031684	-	99	47.607	Rhinopithecus_roxellana
ENSXMAG00000004888	ssb	87	54.000	ENSRROG00000034102	-	96	49.622	Rhinopithecus_roxellana
ENSXMAG00000004888	ssb	100	55.665	ENSSBOG00000027204	SSB	99	55.419	Saimiri_boliviensis_boliviensis
ENSXMAG00000004888	ssb	100	56.158	ENSSHAG00000018062	SSB	99	56.158	Sarcophilus_harrisii
ENSXMAG00000004888	ssb	100	66.015	ENSSFOG00015000550	ssb	99	66.015	Scleropages_formosus
ENSXMAG00000004888	ssb	100	77.419	ENSSMAG00000013885	ssb	99	81.989	Scophthalmus_maximus
ENSXMAG00000004888	ssb	100	83.375	ENSSDUG00000020117	ssb	100	83.375	Seriola_dumerili
ENSXMAG00000004888	ssb	100	79.404	ENSSLDG00000002525	ssb	100	79.156	Seriola_lalandi_dorsalis
ENSXMAG00000004888	ssb	95	51.302	ENSSARG00000007747	SSB	99	51.042	Sorex_araneus
ENSXMAG00000004888	ssb	100	57.843	ENSSPUG00000012112	SSB	99	57.843	Sphenodon_punctatus
ENSXMAG00000004888	ssb	100	79.404	ENSSPAG00000005696	ssb	100	79.404	Stegastes_partitus
ENSXMAG00000004888	ssb	91	54.743	ENSSSCG00000015938	SSB	82	55.422	Sus_scrofa
ENSXMAG00000004888	ssb	95	56.443	ENSTGUG00000007942	SSB	99	56.479	Taeniopygia_guttata
ENSXMAG00000004888	ssb	100	74.194	ENSTRUG00000017839	ssb	100	77.419	Takifugu_rubripes
ENSXMAG00000004888	ssb	91	75.068	ENSTNIG00000000915	ssb	100	73.842	Tetraodon_nigroviridis
ENSXMAG00000004888	ssb	82	66.957	ENSTBEG00000009056	SSB	81	66.957	Tupaia_belangeri
ENSXMAG00000004888	ssb	100	56.757	ENSTTRG00000002152	SSB	99	56.511	Tursiops_truncatus
ENSXMAG00000004888	ssb	93	57.672	ENSUAMG00000027833	SSB	98	57.407	Ursus_americanus
ENSXMAG00000004888	ssb	100	56.265	ENSUMAG00000013907	SSB	99	56.020	Ursus_maritimus
ENSXMAG00000004888	ssb	100	56.404	ENSVPAG00000007183	SSB	99	56.158	Vicugna_pacos
ENSXMAG00000004888	ssb	100	56.265	ENSVVUG00000016573	SSB	77	56.020	Vulpes_vulpes
ENSXMAG00000004888	ssb	99	53.271	ENSXETG00000025402	ssb	99	53.037	Xenopus_tropicalis
ENSXMAG00000004888	ssb	94	94.737	ENSXCOG00000019109	ssb	99	94.737	Xiphophorus_couchianus