EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000004919 (Gene tree)
Gene ID: 102225132
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 8629 bases
Position: chr19:20190724-20199352
Accession: 102225132
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000023561	TruB_N	PF01509.18	9.1e-22	1	1
ENSXMAP00000004940	TruB_N	PF01509.18	1.2e-19	1	1
ENSXMAP00000004940	PUA	PF01472.20	1.4e-16	1	1
ENSXMAP00000023561	PUA	PF01472.20	1.4e-16	1	1
ENSXMAP00000004940	DKCLD	PF08068.12	4.6e-31	1	1
ENSXMAP00000023561	DKCLD	PF08068.12	4.8e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000004945	-	2192	XM_014473713	ENSXMAP00000004940	498 (aa)	XP_014329199	M3ZRU7
ENSXMAT00000039649	-	2317	-	ENSXMAP00000023561	498 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000004919's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000004919's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000004919	dkc1	86	80.499	ENSG00000130826	DKC1	99	87.805	Homo_sapiens
ENSXMAG00000004919	dkc1	97	87.143	ENSAPOG00000007799	dkc1	89	88.938	Acanthochromis_polyacanthus
ENSXMAG00000004919	dkc1	85	81.465	ENSAMEG00000002776	DKC1	86	81.465	Ailuropoda_melanoleuca
ENSXMAG00000004919	dkc1	90	88.889	ENSACIG00000022614	dkc1	88	89.862	Amphilophus_citrinellus
ENSXMAG00000004919	dkc1	97	87.810	ENSAOCG00000013159	dkc1	88	90.278	Amphiprion_ocellaris
ENSXMAG00000004919	dkc1	97	87.810	ENSAPEG00000002284	dkc1	88	90.278	Amphiprion_percula
ENSXMAG00000004919	dkc1	87	86.907	ENSATEG00000013682	dkc1	87	86.907	Anabas_testudineus
ENSXMAG00000004919	dkc1	86	82.380	ENSACAG00000015600	DKC1	75	82.380	Anolis_carolinensis
ENSXMAG00000004919	dkc1	90	79.004	ENSANAG00000022732	DKC1	86	80.726	Aotus_nancymaae
ENSXMAG00000004919	dkc1	97	86.335	ENSACLG00000015605	dkc1	88	88.736	Astatotilapia_calliptera
ENSXMAG00000004919	dkc1	90	84.735	ENSAMXG00000017108	dkc1	85	86.343	Astyanax_mexicanus
ENSXMAG00000004919	dkc1	85	80.822	ENSBTAG00000013045	DKC1	88	79.955	Bos_taurus
ENSXMAG00000004919	dkc1	82	64.373	WBGene00010478	K01G5.5	97	60.970	Caenorhabditis_elegans
ENSXMAG00000004919	dkc1	86	80.682	ENSCJAG00000004210	DKC1	85	80.682	Callithrix_jacchus
ENSXMAG00000004919	dkc1	89	71.041	ENSCAFG00000009311	-	78	76.768	Canis_familiaris
ENSXMAG00000004919	dkc1	89	78.747	ENSCAFG00000019620	-	80	83.495	Canis_familiaris
ENSXMAG00000004919	dkc1	84	71.926	ENSCAFG00020009379	-	82	71.926	Canis_lupus_dingo
ENSXMAG00000004919	dkc1	89	78.747	ENSCAFG00020008918	-	80	83.495	Canis_lupus_dingo
ENSXMAG00000004919	dkc1	85	80.822	ENSCHIG00000017392	DKC1	88	79.955	Capra_hircus
ENSXMAG00000004919	dkc1	86	78.492	ENSTSYG00000007681	DKC1	88	77.849	Carlito_syrichta
ENSXMAG00000004919	dkc1	74	87.263	ENSCAPG00000003342	DKC1	91	82.338	Cavia_aperea
ENSXMAG00000004919	dkc1	89	79.565	ENSCPOG00000008825	DKC1	85	81.465	Cavia_porcellus
ENSXMAG00000004919	dkc1	93	68.632	ENSCCAG00000027418	DKC1	84	70.975	Cebus_capucinus
ENSXMAG00000004919	dkc1	86	80.045	ENSCATG00000033602	DKC1	86	80.045	Cercocebus_atys
ENSXMAG00000004919	dkc1	85	80.410	ENSCLAG00000000720	DKC1	85	81.019	Chinchilla_lanigera
ENSXMAG00000004919	dkc1	86	80.272	ENSCSAG00000006706	DKC1	86	80.272	Chlorocebus_sabaeus
ENSXMAG00000004919	dkc1	86	81.755	ENSCPBG00000005858	DKC1	86	85.468	Chrysemys_picta_bellii
ENSXMAG00000004919	dkc1	80	79.449	ENSCING00000004599	-	83	75.459	Ciona_intestinalis
ENSXMAG00000004919	dkc1	83	76.202	ENSCSAVG00000010047	-	99	70.084	Ciona_savignyi
ENSXMAG00000004919	dkc1	86	80.272	ENSCANG00000027987	DKC1	86	80.272	Colobus_angolensis_palliatus
ENSXMAG00000004919	dkc1	93	58.225	ENSCGRG00001016789	-	89	57.955	Cricetulus_griseus_chok1gshd
ENSXMAG00000004919	dkc1	86	80.952	ENSCGRG00001014574	-	86	80.952	Cricetulus_griseus_chok1gshd
ENSXMAG00000004919	dkc1	98	55.738	ENSCGRG00000014809	-	87	58.182	Cricetulus_griseus_crigri
ENSXMAG00000004919	dkc1	86	80.952	ENSCGRG00000016075	-	86	80.952	Cricetulus_griseus_crigri
ENSXMAG00000004919	dkc1	95	85.624	ENSCSEG00000012633	dkc1	90	87.816	Cynoglossus_semilaevis
ENSXMAG00000004919	dkc1	97	93.789	ENSCVAG00000010155	dkc1	94	93.983	Cyprinodon_variegatus
ENSXMAG00000004919	dkc1	87	88.889	ENSDARG00000016484	dkc1	87	87.982	Danio_rerio
ENSXMAG00000004919	dkc1	86	80.726	ENSDNOG00000004218	DKC1	86	80.726	Dasypus_novemcinctus
ENSXMAG00000004919	dkc1	56	71.119	ENSDORG00000013566	-	91	71.119	Dipodomys_ordii
ENSXMAG00000004919	dkc1	86	68.265	FBgn0259937	Nop60B	88	68.000	Drosophila_melanogaster
ENSXMAG00000004919	dkc1	85	78.231	ENSETEG00000016095	DKC1	90	78.231	Echinops_telfairi
ENSXMAG00000004919	dkc1	69	73.699	ENSEBUG00000015962	dkc1	98	80.412	Eptatretus_burgeri
ENSXMAG00000004919	dkc1	85	78.348	ENSEASG00005007484	DKC1	86	78.348	Equus_asinus_asinus
ENSXMAG00000004919	dkc1	85	78.348	ENSECAG00000023524	DKC1	86	78.348	Equus_caballus
ENSXMAG00000004919	dkc1	79	86.701	ENSEEUG00000003323	DKC1	99	82.075	Erinaceus_europaeus
ENSXMAG00000004919	dkc1	90	87.556	ENSELUG00000014538	dkc1	90	86.652	Esox_lucius
ENSXMAG00000004919	dkc1	80	85.750	ENSFCAG00000006577	DKC1	86	80.690	Felis_catus
ENSXMAG00000004919	dkc1	89	79.869	ENSFALG00000011496	DKC1	86	81.111	Ficedula_albicollis
ENSXMAG00000004919	dkc1	86	81.818	ENSFDAG00000002516	DKC1	88	80.920	Fukomys_damarensis
ENSXMAG00000004919	dkc1	90	94.183	ENSFHEG00000004627	dkc1	90	94.000	Fundulus_heteroclitus
ENSXMAG00000004919	dkc1	79	88.491	ENSGMOG00000017277	dkc1	100	88.491	Gadus_morhua
ENSXMAG00000004919	dkc1	85	82.791	ENSGALG00000005054	DKC1	86	80.942	Gallus_gallus
ENSXMAG00000004919	dkc1	100	98.400	ENSGAFG00000011486	dkc1	86	98.400	Gambusia_affinis
ENSXMAG00000004919	dkc1	80	92.714	ENSGACG00000004373	dkc1	96	93.313	Gasterosteus_aculeatus
ENSXMAG00000004919	dkc1	86	82.448	ENSGAGG00000011330	DKC1	84	82.679	Gopherus_agassizii
ENSXMAG00000004919	dkc1	86	80.499	ENSGGOG00000001045	DKC1	86	80.499	Gorilla_gorilla
ENSXMAG00000004919	dkc1	97	89.050	ENSHBUG00000012436	dkc1	90	90.487	Haplochromis_burtoni
ENSXMAG00000004919	dkc1	80	85.213	ENSHGLG00000000649	DKC1	85	79.909	Heterocephalus_glaber_female
ENSXMAG00000004919	dkc1	80	85.213	ENSHGLG00100001153	DKC1	86	79.909	Heterocephalus_glaber_male
ENSXMAG00000004919	dkc1	96	86.335	ENSHCOG00000021099	dkc1	88	89.286	Hippocampus_comes
ENSXMAG00000004919	dkc1	90	84.464	ENSIPUG00000010309	dkc1	89	83.333	Ictalurus_punctatus
ENSXMAG00000004919	dkc1	86	69.144	ENSSTOG00000011904	-	82	69.144	Ictidomys_tridecemlineatus
ENSXMAG00000004919	dkc1	86	80.135	ENSSTOG00000001074	-	91	80.135	Ictidomys_tridecemlineatus
ENSXMAG00000004919	dkc1	86	73.843	ENSSTOG00000020149	-	85	73.843	Ictidomys_tridecemlineatus
ENSXMAG00000004919	dkc1	56	71.583	ENSJJAG00000010086	-	92	71.583	Jaculus_jaculus
ENSXMAG00000004919	dkc1	90	88.839	ENSKMAG00000008010	dkc1	90	88.248	Kryptolebias_marmoratus
ENSXMAG00000004919	dkc1	86	91.101	ENSLBEG00000019122	dkc1	93	89.404	Labrus_bergylta
ENSXMAG00000004919	dkc1	83	84.541	ENSLACG00000014025	DKC1	90	86.111	Latimeria_chalumnae
ENSXMAG00000004919	dkc1	90	86.154	ENSLOCG00000013713	dkc1	88	88.679	Lepisosteus_oculatus
ENSXMAG00000004919	dkc1	85	80.726	ENSLAFG00000000221	DKC1	87	79.866	Loxodonta_africana
ENSXMAG00000004919	dkc1	86	80.543	ENSMFAG00000032398	DKC1	74	80.543	Macaca_fascicularis
ENSXMAG00000004919	dkc1	86	80.272	ENSMMUG00000005768	DKC1	86	80.272	Macaca_mulatta
ENSXMAG00000004919	dkc1	86	80.272	ENSMNEG00000034503	DKC1	86	80.272	Macaca_nemestrina
ENSXMAG00000004919	dkc1	86	80.272	ENSMLEG00000034422	DKC1	86	80.272	Mandrillus_leucophaeus
ENSXMAG00000004919	dkc1	83	92.718	ENSMAMG00000005427	dkc1	91	93.120	Mastacembelus_armatus
ENSXMAG00000004919	dkc1	97	89.256	ENSMZEG00005014503	dkc1	90	90.708	Maylandia_zebra
ENSXMAG00000004919	dkc1	77	85.385	ENSMGAG00000009238	DKC1	89	82.767	Meleagris_gallopavo
ENSXMAG00000004919	dkc1	56	71.119	ENSMAUG00000016454	-	91	71.119	Mesocricetus_auratus
ENSXMAG00000004919	dkc1	86	70.136	ENSMICG00000002818	-	99	75.824	Microcebus_murinus
ENSXMAG00000004919	dkc1	80	84.712	ENSMICG00000038751	-	80	84.712	Microcebus_murinus
ENSXMAG00000004919	dkc1	56	68.592	ENSMOCG00000001169	-	91	68.592	Microtus_ochrogaster
ENSXMAG00000004919	dkc1	82	92.421	ENSMMOG00000020348	dkc1	87	92.965	Mola_mola
ENSXMAG00000004919	dkc1	80	85.714	ENSMODG00000009243	DKC1	69	86.146	Monodelphis_domestica
ENSXMAG00000004919	dkc1	86	91.142	ENSMALG00000009454	dkc1	86	90.367	Monopterus_albus
ENSXMAG00000004919	dkc1	86	69.196	MGP_CAROLIEiJ_G0033191	Dkc1	86	81.102	Mus_caroli
ENSXMAG00000004919	dkc1	85	80.638	ENSMUSG00000031403	Dkc1	86	80.638	Mus_musculus
ENSXMAG00000004919	dkc1	85	80.734	MGP_PahariEiJ_G0031735	Dkc1	85	80.734	Mus_pahari
ENSXMAG00000004919	dkc1	85	80.638	MGP_SPRETEiJ_G0034351	Dkc1	86	80.638	Mus_spretus
ENSXMAG00000004919	dkc1	92	77.729	ENSMPUG00000016136	DKC1	84	77.489	Mustela_putorius_furo
ENSXMAG00000004919	dkc1	90	76.017	ENSMLUG00000011918	DKC1	85	77.477	Myotis_lucifugus
ENSXMAG00000004919	dkc1	56	71.480	ENSNGAG00000015724	-	92	71.480	Nannospalax_galili
ENSXMAG00000004919	dkc1	83	93.253	ENSNBRG00000005638	dkc1	80	95.226	Neolamprologus_brichardi
ENSXMAG00000004919	dkc1	86	80.272	ENSNLEG00000014323	DKC1	86	80.272	Nomascus_leucogenys
ENSXMAG00000004919	dkc1	81	81.931	ENSMEUG00000001066	DKC1	96	76.484	Notamacropus_eugenii
ENSXMAG00000004919	dkc1	70	79.023	ENSOPRG00000005248	DKC1	69	79.023	Ochotona_princeps
ENSXMAG00000004919	dkc1	80	86.967	ENSODEG00000011816	-	86	82.151	Octodon_degus
ENSXMAG00000004919	dkc1	56	71.119	ENSODEG00000000549	-	91	71.119	Octodon_degus
ENSXMAG00000004919	dkc1	97	89.095	ENSONIG00000013889	dkc1	87	92.414	Oreochromis_niloticus
ENSXMAG00000004919	dkc1	84	83.295	ENSOANG00000008713	-	90	82.569	Ornithorhynchus_anatinus
ENSXMAG00000004919	dkc1	56	63.158	ENSOANG00000022295	-	86	62.460	Ornithorhynchus_anatinus
ENSXMAG00000004919	dkc1	86	79.773	ENSOCUG00000012646	DKC1	86	79.773	Oryctolagus_cuniculus
ENSXMAG00000004919	dkc1	91	86.755	ENSORLG00000018748	dkc1	85	87.067	Oryzias_latipes
ENSXMAG00000004919	dkc1	89	87.640	ENSOMEG00000005786	dkc1	83	88.797	Oryzias_melastigma
ENSXMAG00000004919	dkc1	86	78.271	ENSOGAG00000003399	DKC1	86	78.271	Otolemur_garnettii
ENSXMAG00000004919	dkc1	85	81.050	ENSOARG00000003047	DKC1	88	80.180	Ovis_aries
ENSXMAG00000004919	dkc1	83	81.925	ENSPPAG00000023820	DKC1	86	80.726	Pan_paniscus
ENSXMAG00000004919	dkc1	85	80.690	ENSPPRG00000009104	DKC1	86	80.690	Panthera_pardus
ENSXMAG00000004919	dkc1	85	82.742	ENSPTIG00000017469	DKC1	85	82.742	Panthera_tigris_altaica
ENSXMAG00000004919	dkc1	86	80.499	ENSPTRG00000043416	-	74	80.499	Pan_troglodytes
ENSXMAG00000004919	dkc1	86	80.499	ENSPTRG00000022449	DKC1	86	80.499	Pan_troglodytes
ENSXMAG00000004919	dkc1	86	80.272	ENSPANG00000011978	DKC1	86	80.272	Papio_anubis
ENSXMAG00000004919	dkc1	87	85.355	ENSPKIG00000008443	dkc1	92	85.355	Paramormyrops_kingsleyae
ENSXMAG00000004919	dkc1	72	89.106	ENSPSIG00000013765	DKC1	86	89.106	Pelodiscus_sinensis
ENSXMAG00000004919	dkc1	97	75.842	ENSPMGG00000004097	dkc1	85	78.696	Periophthalmus_magnuspinnatus
ENSXMAG00000004919	dkc1	66	85.235	ENSPEMG00000013348	Dkc1	83	84.302	Peromyscus_maniculatus_bairdii
ENSXMAG00000004919	dkc1	80	86.466	ENSPCIG00000016706	DKC1	67	86.466	Phascolarctos_cinereus
ENSXMAG00000004919	dkc1	100	97.600	ENSPFOG00000018653	dkc1	100	97.600	Poecilia_formosa
ENSXMAG00000004919	dkc1	100	97.600	ENSPLAG00000003272	dkc1	90	97.600	Poecilia_latipinna
ENSXMAG00000004919	dkc1	100	97.000	ENSPMEG00000010413	dkc1	100	97.000	Poecilia_mexicana
ENSXMAG00000004919	dkc1	100	97.800	ENSPREG00000004100	dkc1	90	97.800	Poecilia_reticulata
ENSXMAG00000004919	dkc1	96	76.375	ENSPPYG00000020892	DKC1	96	77.143	Pongo_abelii
ENSXMAG00000004919	dkc1	73	86.575	ENSPCAG00000015034	DKC1	71	86.575	Procavia_capensis
ENSXMAG00000004919	dkc1	90	77.922	ENSPCOG00000026874	DKC1	86	79.592	Propithecus_coquereli
ENSXMAG00000004919	dkc1	86	81.206	ENSPVAG00000009222	DKC1	86	81.206	Pteropus_vampyrus
ENSXMAG00000004919	dkc1	97	85.253	ENSPNYG00000020063	dkc1	89	88.367	Pundamilia_nyererei
ENSXMAG00000004919	dkc1	87	85.227	ENSPNAG00000005780	dkc1	87	84.862	Pygocentrus_nattereri
ENSXMAG00000004919	dkc1	86	78.231	ENSRNOG00000055562	Dkc1	86	78.231	Rattus_norvegicus
ENSXMAG00000004919	dkc1	86	80.272	ENSRBIG00000028457	DKC1	74	80.272	Rhinopithecus_bieti
ENSXMAG00000004919	dkc1	86	80.272	ENSRROG00000044780	DKC1	86	80.272	Rhinopithecus_roxellana
ENSXMAG00000004919	dkc1	77	70.757	YLR175W	-	85	66.268	Saccharomyces_cerevisiae
ENSXMAG00000004919	dkc1	86	80.499	ENSSBOG00000033746	DKC1	85	80.499	Saimiri_boliviensis_boliviensis
ENSXMAG00000004919	dkc1	91	78.761	ENSSHAG00000002463	DKC1	93	80.682	Sarcophilus_harrisii
ENSXMAG00000004919	dkc1	90	84.211	ENSSFOG00015009585	dkc1	85	85.747	Scleropages_formosus
ENSXMAG00000004919	dkc1	90	87.225	ENSSMAG00000002552	dkc1	89	87.225	Scophthalmus_maximus
ENSXMAG00000004919	dkc1	91	90.308	ENSSDUG00000009963	dkc1	90	90.066	Seriola_dumerili
ENSXMAG00000004919	dkc1	91	88.571	ENSSLDG00000019342	dkc1	87	89.195	Seriola_lalandi_dorsalis
ENSXMAG00000004919	dkc1	86	76.082	ENSSARG00000001822	DKC1	88	76.765	Sorex_araneus
ENSXMAG00000004919	dkc1	84	83.135	ENSSPUG00000018907	DKC1	87	78.728	Sphenodon_punctatus
ENSXMAG00000004919	dkc1	90	89.286	ENSSPAG00000002585	dkc1	82	90.300	Stegastes_partitus
ENSXMAG00000004919	dkc1	95	76.221	ENSSSCG00000012823	DKC1	88	81.517	Sus_scrofa
ENSXMAG00000004919	dkc1	90	78.867	ENSTGUG00000006781	DKC1	99	78.603	Taeniopygia_guttata
ENSXMAG00000004919	dkc1	90	88.000	ENSTRUG00000004413	dkc1	90	88.000	Takifugu_rubripes
ENSXMAG00000004919	dkc1	90	69.978	ENSTNIG00000002582	dkc1	87	70.404	Tetraodon_nigroviridis
ENSXMAG00000004919	dkc1	57	80.602	ENSTBEG00000011262	DKC1	85	79.935	Tupaia_belangeri
ENSXMAG00000004919	dkc1	56	85.560	ENSTTRG00000008089	DKC1	55	85.560	Tursiops_truncatus
ENSXMAG00000004919	dkc1	93	77.489	ENSUAMG00000022721	DKC1	89	81.991	Ursus_americanus
ENSXMAG00000004919	dkc1	93	77.056	ENSUMAG00000016899	DKC1	98	83.208	Ursus_maritimus
ENSXMAG00000004919	dkc1	82	82.100	ENSVVUG00000020734	-	72	82.100	Vulpes_vulpes
ENSXMAG00000004919	dkc1	90	65.111	ENSVVUG00000021671	-	76	69.830	Vulpes_vulpes
ENSXMAG00000004919	dkc1	96	79.876	ENSXETG00000032517	DKC1	85	86.385	Xenopus_tropicalis
ENSXMAG00000004919	dkc1	94	96.788	ENSXCOG00000005498	dkc1	100	96.788	Xiphophorus_couchianus