EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000005536 (Gene tree)
Gene ID: 102231841
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 5794 bases
Position: chr9:12309779-12315572
Accession: 102231841
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000036087	MMR_HSR1	PF01926.23	1.6e-13	1	1
ENSXMAP00000005560	MMR_HSR1	PF01926.23	1.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000005566	-	2768	XM_023339111	ENSXMAP00000005560	651 (aa)	XP_023194879	M3ZTL7
ENSXMAT00000040296	-	1863	-	ENSXMAP00000036087	620 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000005536's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000005536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000005536	lsg1	99	65.361	ENSG00000041802	LSG1	89	79.747	Homo_sapiens
ENSXMAG00000005536	lsg1	100	77.982	ENSAPOG00000009694	lsg1	98	77.900	Acanthochromis_polyacanthus
ENSXMAG00000005536	lsg1	99	62.629	ENSAMEG00000009343	LSG1	97	62.481	Ailuropoda_melanoleuca
ENSXMAG00000005536	lsg1	98	80.129	ENSACIG00000012406	lsg1	97	80.032	Amphilophus_citrinellus
ENSXMAG00000005536	lsg1	100	77.341	ENSAOCG00000016066	lsg1	98	77.900	Amphiprion_ocellaris
ENSXMAG00000005536	lsg1	100	77.190	ENSAPEG00000003252	lsg1	98	77.934	Amphiprion_percula
ENSXMAG00000005536	lsg1	98	80.560	ENSATEG00000011794	lsg1	96	82.363	Anabas_testudineus
ENSXMAG00000005536	lsg1	95	60.815	ENSACAG00000004222	LSG1	99	60.252	Anolis_carolinensis
ENSXMAG00000005536	lsg1	99	64.199	ENSANAG00000021153	LSG1	97	64.486	Aotus_nancymaae
ENSXMAG00000005536	lsg1	100	80.631	ENSACLG00000000520	lsg1	98	80.462	Astatotilapia_calliptera
ENSXMAG00000005536	lsg1	99	70.802	ENSAMXG00000008271	lsg1	98	70.183	Astyanax_mexicanus
ENSXMAG00000005536	lsg1	99	65.031	ENSBTAG00000008461	LSG1	97	65.055	Bos_taurus
ENSXMAG00000005536	lsg1	74	46.818	WBGene00016907	C53H9.2	80	55.738	Caenorhabditis_elegans
ENSXMAG00000005536	lsg1	99	64.157	ENSCJAG00000013962	LSG1	97	64.861	Callithrix_jacchus
ENSXMAG00000005536	lsg1	95	64.209	ENSCAFG00000013445	LSG1	99	63.793	Canis_familiaris
ENSXMAG00000005536	lsg1	99	63.504	ENSCAFG00020002216	LSG1	99	63.369	Canis_lupus_dingo
ENSXMAG00000005536	lsg1	99	64.861	ENSCHIG00000015769	LSG1	97	65.142	Capra_hircus
ENSXMAG00000005536	lsg1	99	63.196	ENSTSYG00000001447	LSG1	97	63.524	Carlito_syrichta
ENSXMAG00000005536	lsg1	95	64.182	ENSCAPG00000009856	LSG1	99	64.474	Cavia_aperea
ENSXMAG00000005536	lsg1	99	64.590	ENSCCAG00000035744	LSG1	97	65.252	Cebus_capucinus
ENSXMAG00000005536	lsg1	99	65.361	ENSCATG00000042060	LSG1	97	64.596	Cercocebus_atys
ENSXMAG00000005536	lsg1	99	65.158	ENSCSAG00000008796	LSG1	89	65.265	Chlorocebus_sabaeus
ENSXMAG00000005536	lsg1	100	65.487	ENSCPBG00000015941	LSG1	81	65.053	Chrysemys_picta_bellii
ENSXMAG00000005536	lsg1	84	47.810	ENSCING00000007079	-	92	59.184	Ciona_intestinalis
ENSXMAG00000005536	lsg1	84	50.286	ENSCSAVG00000002514	-	98	53.226	Ciona_savignyi
ENSXMAG00000005536	lsg1	99	64.412	ENSCANG00000030709	LSG1	97	64.953	Colobus_angolensis_palliatus
ENSXMAG00000005536	lsg1	99	65.732	ENSCGRG00001019846	Lsg1	97	66.294	Cricetulus_griseus_chok1gshd
ENSXMAG00000005536	lsg1	99	64.126	ENSCGRG00000014617	Lsg1	97	64.642	Cricetulus_griseus_crigri
ENSXMAG00000005536	lsg1	98	76.115	ENSCSEG00000008522	lsg1	97	76.000	Cynoglossus_semilaevis
ENSXMAG00000005536	lsg1	98	85.039	ENSCVAG00000002484	lsg1	97	85.669	Cyprinodon_variegatus
ENSXMAG00000005536	lsg1	100	72.477	ENSDARG00000015352	lsg1	97	72.057	Danio_rerio
ENSXMAG00000005536	lsg1	99	64.435	ENSDNOG00000006224	LSG1	97	62.935	Dasypus_novemcinctus
ENSXMAG00000005536	lsg1	99	49.524	FBgn0266284	Ns3	95	49.667	Drosophila_melanogaster
ENSXMAG00000005536	lsg1	88	74.667	ENSETEG00000003888	LSG1	87	77.966	Echinops_telfairi
ENSXMAG00000005536	lsg1	88	55.500	ENSEBUG00000003119	lsg1	85	55.345	Eptatretus_burgeri
ENSXMAG00000005536	lsg1	99	63.930	ENSEASG00005000678	LSG1	97	64.386	Equus_asinus_asinus
ENSXMAG00000005536	lsg1	99	63.783	ENSECAG00000017659	LSG1	97	64.075	Equus_caballus
ENSXMAG00000005536	lsg1	87	59.829	ENSEEUG00000015217	LSG1	75	59.829	Erinaceus_europaeus
ENSXMAG00000005536	lsg1	100	72.170	ENSELUG00000023973	lsg1	98	72.144	Esox_lucius
ENSXMAG00000005536	lsg1	99	63.220	ENSFCAG00000024957	LSG1	97	63.691	Felis_catus
ENSXMAG00000005536	lsg1	92	63.333	ENSFALG00000007210	LSG1	94	62.222	Ficedula_albicollis
ENSXMAG00000005536	lsg1	99	63.897	ENSFDAG00000017373	LSG1	97	64.241	Fukomys_damarensis
ENSXMAG00000005536	lsg1	98	85.603	ENSFHEG00000003680	lsg1	97	85.290	Fundulus_heteroclitus
ENSXMAG00000005536	lsg1	87	82.479	ENSGMOG00000015834	lsg1	85	82.684	Gadus_morhua
ENSXMAG00000005536	lsg1	99	60.444	ENSGALG00000007058	LSG1	86	60.836	Gallus_gallus
ENSXMAG00000005536	lsg1	100	92.934	ENSGAFG00000015831	lsg1	100	92.934	Gambusia_affinis
ENSXMAG00000005536	lsg1	98	77.329	ENSGACG00000009323	lsg1	97	77.223	Gasterosteus_aculeatus
ENSXMAG00000005536	lsg1	99	65.533	ENSGGOG00000000520	LSG1	97	65.635	Gorilla_gorilla
ENSXMAG00000005536	lsg1	100	81.611	ENSHBUG00000005659	lsg1	98	81.464	Haplochromis_burtoni
ENSXMAG00000005536	lsg1	99	63.422	ENSHGLG00000017390	LSG1	97	64.251	Heterocephalus_glaber_female
ENSXMAG00000005536	lsg1	99	63.422	ENSHGLG00100018587	LSG1	97	64.251	Heterocephalus_glaber_male
ENSXMAG00000005536	lsg1	98	76.480	ENSHCOG00000016848	lsg1	97	76.480	Hippocampus_comes
ENSXMAG00000005536	lsg1	100	71.787	ENSIPUG00000008631	lsg1	97	72.484	Ictalurus_punctatus
ENSXMAG00000005536	lsg1	76	57.834	ENSSTOG00000010234	LSG1	92	58.812	Ictidomys_tridecemlineatus
ENSXMAG00000005536	lsg1	99	65.728	ENSJJAG00000015513	Lsg1	97	65.595	Jaculus_jaculus
ENSXMAG00000005536	lsg1	98	77.308	ENSKMAG00000009681	lsg1	97	77.201	Kryptolebias_marmoratus
ENSXMAG00000005536	lsg1	98	76.998	ENSLBEG00000024261	lsg1	97	77.905	Labrus_bergylta
ENSXMAG00000005536	lsg1	100	63.836	ENSLACG00000013399	LSG1	98	63.718	Latimeria_chalumnae
ENSXMAG00000005536	lsg1	98	69.111	ENSLOCG00000004918	lsg1	97	69.449	Lepisosteus_oculatus
ENSXMAG00000005536	lsg1	99	64.715	ENSLAFG00000012919	-	97	65.561	Loxodonta_africana
ENSXMAG00000005536	lsg1	99	65.211	ENSMFAG00000039903	LSG1	97	64.441	Macaca_fascicularis
ENSXMAG00000005536	lsg1	99	65.211	ENSMMUG00000010708	LSG1	97	65.683	Macaca_mulatta
ENSXMAG00000005536	lsg1	99	65.211	ENSMNEG00000031538	LSG1	97	64.441	Macaca_nemestrina
ENSXMAG00000005536	lsg1	99	65.060	ENSMLEG00000041184	LSG1	97	65.683	Mandrillus_leucophaeus
ENSXMAG00000005536	lsg1	100	77.778	ENSMAMG00000000470	lsg1	98	78.013	Mastacembelus_armatus
ENSXMAG00000005536	lsg1	100	81.611	ENSMZEG00005017865	lsg1	98	81.464	Maylandia_zebra
ENSXMAG00000005536	lsg1	88	61.248	ENSMGAG00000007050	LSG1	99	61.460	Meleagris_gallopavo
ENSXMAG00000005536	lsg1	90	65.685	ENSMAUG00000016976	Lsg1	90	66.786	Mesocricetus_auratus
ENSXMAG00000005536	lsg1	99	63.293	ENSMICG00000049087	LSG1	97	63.665	Microcebus_murinus
ENSXMAG00000005536	lsg1	99	64.969	ENSMOCG00000022136	Lsg1	97	65.823	Microtus_ochrogaster
ENSXMAG00000005536	lsg1	87	89.167	ENSMMOG00000008884	lsg1	97	74.918	Mola_mola
ENSXMAG00000005536	lsg1	99	55.053	ENSMODG00000019828	LSG1	97	54.219	Monodelphis_domestica
ENSXMAG00000005536	lsg1	99	64.820	MGP_CAROLIEiJ_G0020648	Lsg1	97	65.491	Mus_caroli
ENSXMAG00000005536	lsg1	99	64.812	ENSMUSG00000022538	Lsg1	97	65.331	Mus_musculus
ENSXMAG00000005536	lsg1	98	64.091	MGP_PahariEiJ_G0016352	Lsg1	97	64.472	Mus_pahari
ENSXMAG00000005536	lsg1	99	65.361	MGP_SPRETEiJ_G0021544	Lsg1	97	65.586	Mus_spretus
ENSXMAG00000005536	lsg1	99	63.663	ENSMPUG00000003734	LSG1	97	63.830	Mustela_putorius_furo
ENSXMAG00000005536	lsg1	99	64.829	ENSMLUG00000012548	LSG1	97	64.992	Myotis_lucifugus
ENSXMAG00000005536	lsg1	99	64.308	ENSNGAG00000021872	Lsg1	97	66.184	Nannospalax_galili
ENSXMAG00000005536	lsg1	99	64.458	ENSNLEG00000008293	LSG1	97	64.907	Nomascus_leucogenys
ENSXMAG00000005536	lsg1	70	71.134	ENSMEUG00000009041	-	85	71.134	Notamacropus_eugenii
ENSXMAG00000005536	lsg1	100	80.995	ENSONIG00000002635	lsg1	98	80.989	Oreochromis_niloticus
ENSXMAG00000005536	lsg1	95	66.558	ENSOANG00000012742	LSG1	99	66.721	Ornithorhynchus_anatinus
ENSXMAG00000005536	lsg1	99	64.036	ENSOCUG00000004817	LSG1	97	64.142	Oryctolagus_cuniculus
ENSXMAG00000005536	lsg1	98	80.656	ENSORLG00000007695	lsg1	97	80.795	Oryzias_latipes
ENSXMAG00000005536	lsg1	98	81.311	ENSORLG00020016286	lsg1	97	81.054	Oryzias_latipes_hni
ENSXMAG00000005536	lsg1	98	80.725	ENSORLG00015012025	lsg1	97	80.960	Oryzias_latipes_hsok
ENSXMAG00000005536	lsg1	98	78.176	ENSOMEG00000022379	lsg1	97	77.905	Oryzias_melastigma
ENSXMAG00000005536	lsg1	99	62.963	ENSOGAG00000003475	LSG1	97	62.822	Otolemur_garnettii
ENSXMAG00000005536	lsg1	99	63.785	ENSOARG00000020403	LSG1	97	64.486	Ovis_aries
ENSXMAG00000005536	lsg1	99	65.198	ENSPPAG00000029271	LSG1	97	65.421	Pan_paniscus
ENSXMAG00000005536	lsg1	99	62.427	ENSPPRG00000010281	LSG1	97	63.024	Panthera_pardus
ENSXMAG00000005536	lsg1	99	63.072	ENSPTIG00000010789	LSG1	97	63.691	Panthera_tigris_altaica
ENSXMAG00000005536	lsg1	99	65.046	ENSPTRG00000015760	LSG1	97	65.265	Pan_troglodytes
ENSXMAG00000005536	lsg1	99	64.759	ENSPANG00000018249	LSG1	97	63.975	Papio_anubis
ENSXMAG00000005536	lsg1	99	71.101	ENSPKIG00000002895	lsg1	97	72.123	Paramormyrops_kingsleyae
ENSXMAG00000005536	lsg1	96	61.102	ENSPSIG00000009821	LSG1	99	61.102	Pelodiscus_sinensis
ENSXMAG00000005536	lsg1	95	76.367	ENSPMGG00000000931	lsg1	100	76.151	Periophthalmus_magnuspinnatus
ENSXMAG00000005536	lsg1	99	63.846	ENSPEMG00000012082	-	97	63.339	Peromyscus_maniculatus_bairdii
ENSXMAG00000005536	lsg1	99	60.350	ENSPMAG00000007451	lsg1	98	59.021	Petromyzon_marinus
ENSXMAG00000005536	lsg1	98	62.105	ENSPCIG00000013890	LSG1	79	62.434	Phascolarctos_cinereus
ENSXMAG00000005536	lsg1	98	93.858	ENSPFOG00000021882	lsg1	97	93.858	Poecilia_formosa
ENSXMAG00000005536	lsg1	100	93.241	ENSPLAG00000019536	lsg1	100	93.241	Poecilia_latipinna
ENSXMAG00000005536	lsg1	98	92.936	ENSPMEG00000017281	lsg1	97	92.936	Poecilia_mexicana
ENSXMAG00000005536	lsg1	98	80.960	ENSPREG00000006048	lsg1	97	81.115	Poecilia_reticulata
ENSXMAG00000005536	lsg1	92	63.802	ENSPPYG00000014425	LSG1	97	65.042	Pongo_abelii
ENSXMAG00000005536	lsg1	90	72.000	ENSPCAG00000005511	LSG1	87	76.271	Procavia_capensis
ENSXMAG00000005536	lsg1	99	64.580	ENSPCOG00000012360	LSG1	97	64.476	Propithecus_coquereli
ENSXMAG00000005536	lsg1	100	80.631	ENSPNYG00000021994	lsg1	98	80.462	Pundamilia_nyererei
ENSXMAG00000005536	lsg1	100	71.651	ENSPNAG00000015533	lsg1	98	71.565	Pygocentrus_nattereri
ENSXMAG00000005536	lsg1	99	63.969	ENSRNOG00000001727	Lsg1	97	64.242	Rattus_norvegicus
ENSXMAG00000005536	lsg1	99	64.404	ENSRBIG00000029053	LSG1	97	64.806	Rhinopithecus_bieti
ENSXMAG00000005536	lsg1	99	64.404	ENSRROG00000037702	LSG1	97	64.806	Rhinopithecus_roxellana
ENSXMAG00000005536	lsg1	81	41.399	YGL099W	LSG1	70	43.058	Saccharomyces_cerevisiae
ENSXMAG00000005536	lsg1	99	64.048	ENSSBOG00000034938	LSG1	97	64.798	Saimiri_boliviensis_boliviensis
ENSXMAG00000005536	lsg1	78	60.148	ENSSHAG00000003487	LSG1	100	59.888	Sarcophilus_harrisii
ENSXMAG00000005536	lsg1	98	71.562	ENSSFOG00015008955	lsg1	97	71.474	Scleropages_formosus
ENSXMAG00000005536	lsg1	98	80.650	ENSSDUG00000004622	lsg1	98	80.715	Seriola_dumerili
ENSXMAG00000005536	lsg1	98	79.808	ENSSLDG00000010869	lsg1	97	79.871	Seriola_lalandi_dorsalis
ENSXMAG00000005536	lsg1	83	65.294	ENSSARG00000012981	LSG1	81	62.881	Sorex_araneus
ENSXMAG00000005536	lsg1	100	64.382	ENSSPUG00000016347	LSG1	97	63.914	Sphenodon_punctatus
ENSXMAG00000005536	lsg1	100	77.047	ENSSPAG00000005508	lsg1	98	78.418	Stegastes_partitus
ENSXMAG00000005536	lsg1	99	63.876	ENSSSCG00000011827	LSG1	97	64.070	Sus_scrofa
ENSXMAG00000005536	lsg1	89	60.097	ENSTGUG00000009068	LSG1	100	60.000	Taeniopygia_guttata
ENSXMAG00000005536	lsg1	97	75.041	ENSTRUG00000017380	lsg1	97	74.757	Takifugu_rubripes
ENSXMAG00000005536	lsg1	98	77.429	ENSTNIG00000015570	lsg1	97	78.056	Tetraodon_nigroviridis
ENSXMAG00000005536	lsg1	99	60.123	ENSTTRG00000000559	LSG1	97	60.063	Tursiops_truncatus
ENSXMAG00000005536	lsg1	99	63.196	ENSUAMG00000012454	LSG1	97	63.540	Ursus_americanus
ENSXMAG00000005536	lsg1	99	63.196	ENSUMAG00000000855	LSG1	97	63.540	Ursus_maritimus
ENSXMAG00000005536	lsg1	95	60.640	ENSVPAG00000012400	LSG1	99	60.320	Vicugna_pacos
ENSXMAG00000005536	lsg1	95	64.082	ENSVVUG00000008956	LSG1	97	63.924	Vulpes_vulpes
ENSXMAG00000005536	lsg1	100	65.177	ENSXETG00000003451	lsg1	98	65.590	Xenopus_tropicalis
ENSXMAG00000005536	lsg1	100	95.392	ENSXCOG00000003239	lsg1	100	95.392	Xiphophorus_couchianus