EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000005537 (Gene tree)
Gene ID: 102219570
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 4165 bases
Position: chr8:15322996-15327160
Accession: 102219570
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000005547	zf-C2H2	PF00096.26	9.4e-13	1	2
ENSXMAP00000005547	zf-C2H2	PF00096.26	9.4e-13	2	2
ENSXMAP00000005547	zf-met	PF12874.7	9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000005553	-	1967	XM_005803779	ENSXMAP00000005547	375 (aa)	XP_005803836	M3ZTK4

Gene Model

Click here to download ENSXMAG00000005537's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000005537's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000005537	prdm12b	91	82.111	ENSG00000130711	PRDM12	88	82.934	Homo_sapiens
ENSXMAG00000005537	prdm12b	100	89.637	ENSAPOG00000016051	prdm12b	100	89.378	Acanthochromis_polyacanthus
ENSXMAG00000005537	prdm12b	100	65.699	ENSAPOG00000018234	-	100	65.699	Acanthochromis_polyacanthus
ENSXMAG00000005537	prdm12b	89	81.437	ENSAMEG00000016234	PRDM12	99	81.682	Ailuropoda_melanoleuca
ENSXMAG00000005537	prdm12b	100	78.608	ENSACIG00000005193	-	100	78.093	Amphilophus_citrinellus
ENSXMAG00000005537	prdm12b	100	89.005	ENSACIG00000019578	prdm12b	100	88.743	Amphilophus_citrinellus
ENSXMAG00000005537	prdm12b	100	89.005	ENSAOCG00000015040	prdm12b	100	88.743	Amphiprion_ocellaris
ENSXMAG00000005537	prdm12b	100	73.469	ENSAPEG00000022849	-	99	73.469	Amphiprion_percula
ENSXMAG00000005537	prdm12b	100	89.710	ENSAPEG00000015092	prdm12b	100	89.974	Amphiprion_percula
ENSXMAG00000005537	prdm12b	100	78.961	ENSATEG00000014595	-	98	82.059	Anabas_testudineus
ENSXMAG00000005537	prdm12b	93	80.802	ENSANAG00000020616	PRDM12	96	82.544	Aotus_nancymaae
ENSXMAG00000005537	prdm12b	100	77.078	ENSACLG00000007631	-	100	76.515	Astatotilapia_calliptera
ENSXMAG00000005537	prdm12b	100	87.268	ENSACLG00000011876	prdm12b	100	85.942	Astatotilapia_calliptera
ENSXMAG00000005537	prdm12b	100	82.667	ENSAMXG00000033665	prdm12b	100	82.667	Astyanax_mexicanus
ENSXMAG00000005537	prdm12b	100	80.533	ENSAMXG00000008540	PRDM12	100	80.533	Astyanax_mexicanus
ENSXMAG00000005537	prdm12b	91	82.111	ENSBTAG00000023797	PRDM12	99	77.333	Bos_taurus
ENSXMAG00000005537	prdm12b	91	82.111	ENSCJAG00000020540	PRDM12	99	77.067	Callithrix_jacchus
ENSXMAG00000005537	prdm12b	80	82.274	ENSCAFG00000023076	PRDM12	99	76.877	Canis_familiaris
ENSXMAG00000005537	prdm12b	91	82.111	ENSCAFG00020024046	PRDM12	99	77.333	Canis_lupus_dingo
ENSXMAG00000005537	prdm12b	91	82.111	ENSCHIG00000025005	PRDM12	99	77.333	Capra_hircus
ENSXMAG00000005537	prdm12b	86	82.298	ENSCPOG00000005901	PRDM12	95	82.298	Cavia_porcellus
ENSXMAG00000005537	prdm12b	91	82.111	ENSCCAG00000037485	PRDM12	99	77.067	Cebus_capucinus
ENSXMAG00000005537	prdm12b	91	82.111	ENSCATG00000020327	PRDM12	99	77.067	Cercocebus_atys
ENSXMAG00000005537	prdm12b	89	82.635	ENSCLAG00000005499	PRDM12	90	81.953	Chinchilla_lanigera
ENSXMAG00000005537	prdm12b	91	82.111	ENSCSAG00000014756	PRDM12	99	77.067	Chlorocebus_sabaeus
ENSXMAG00000005537	prdm12b	100	79.200	ENSCPBG00000022628	PRDM12	99	78.133	Chrysemys_picta_bellii
ENSXMAG00000005537	prdm12b	91	82.111	ENSCGRG00001015005	Prdm12	99	77.333	Cricetulus_griseus_chok1gshd
ENSXMAG00000005537	prdm12b	100	96.000	ENSCVAG00000017166	prdm12b	100	96.000	Cyprinodon_variegatus
ENSXMAG00000005537	prdm12b	100	79.231	ENSCVAG00000000944	-	100	78.718	Cyprinodon_variegatus
ENSXMAG00000005537	prdm12b	100	81.600	ENSDARG00000007430	prdm12b	100	81.333	Danio_rerio
ENSXMAG00000005537	prdm12b	91	81.579	ENSDNOG00000042302	PRDM12	99	77.128	Dasypus_novemcinctus
ENSXMAG00000005537	prdm12b	85	66.667	ENSEBUG00000016780	prdm12b	74	68.155	Eptatretus_burgeri
ENSXMAG00000005537	prdm12b	95	80.000	ENSEASG00005008472	PRDM12	90	83.234	Equus_asinus_asinus
ENSXMAG00000005537	prdm12b	95	80.000	ENSECAG00000005933	PRDM12	90	83.234	Equus_caballus
ENSXMAG00000005537	prdm12b	100	81.675	ENSELUG00000013674	PRDM12	100	82.415	Esox_lucius
ENSXMAG00000005537	prdm12b	100	81.600	ENSELUG00000009905	prdm12b	100	81.333	Esox_lucius
ENSXMAG00000005537	prdm12b	91	82.111	ENSFCAG00000043086	PRDM12	89	83.234	Felis_catus
ENSXMAG00000005537	prdm12b	100	80.000	ENSFALG00000001445	PRDM12	89	78.933	Ficedula_albicollis
ENSXMAG00000005537	prdm12b	100	94.974	ENSFHEG00000003944	prdm12b	100	93.651	Fundulus_heteroclitus
ENSXMAG00000005537	prdm12b	100	75.810	ENSFHEG00000007746	-	100	75.758	Fundulus_heteroclitus
ENSXMAG00000005537	prdm12b	100	83.684	ENSGMOG00000011797	prdm12b	100	82.850	Gadus_morhua
ENSXMAG00000005537	prdm12b	100	80.000	ENSGALG00000003895	PRDM12	99	78.933	Gallus_gallus
ENSXMAG00000005537	prdm12b	100	97.347	ENSGAFG00000010827	prdm12b	99	97.347	Gambusia_affinis
ENSXMAG00000005537	prdm12b	100	89.390	ENSGACG00000016713	prdm12b	99	88.800	Gasterosteus_aculeatus
ENSXMAG00000005537	prdm12b	100	79.200	ENSGAGG00000014083	PRDM12	99	78.133	Gopherus_agassizii
ENSXMAG00000005537	prdm12b	91	81.818	ENSGGOG00000010568	PRDM12	99	76.800	Gorilla_gorilla
ENSXMAG00000005537	prdm12b	100	90.000	ENSHBUG00000022878	prdm12b	100	88.947	Haplochromis_burtoni
ENSXMAG00000005537	prdm12b	100	77.078	ENSHBUG00000022537	-	93	76.515	Haplochromis_burtoni
ENSXMAG00000005537	prdm12b	89	82.934	ENSHGLG00000013939	PRDM12	89	82.934	Heterocephalus_glaber_female
ENSXMAG00000005537	prdm12b	89	86.589	ENSHCOG00000003663	prdm12b	100	80.253	Hippocampus_comes
ENSXMAG00000005537	prdm12b	100	71.688	ENSHCOG00000021167	-	100	70.649	Hippocampus_comes
ENSXMAG00000005537	prdm12b	100	78.400	ENSIPUG00000019544	PRDM12	100	78.400	Ictalurus_punctatus
ENSXMAG00000005537	prdm12b	100	84.000	ENSIPUG00000017053	prdm12b	100	84.000	Ictalurus_punctatus
ENSXMAG00000005537	prdm12b	96	79.109	ENSSTOG00000005986	PRDM12	86	82.544	Ictidomys_tridecemlineatus
ENSXMAG00000005537	prdm12b	89	83.234	ENSJJAG00000005424	Prdm12	99	82.544	Jaculus_jaculus
ENSXMAG00000005537	prdm12b	100	81.683	ENSKMAG00000016921	prdm12b	100	84.158	Kryptolebias_marmoratus
ENSXMAG00000005537	prdm12b	94	77.311	ENSKMAG00000021205	-	93	77.031	Kryptolebias_marmoratus
ENSXMAG00000005537	prdm12b	100	90.212	ENSLBEG00000017769	prdm12b	100	89.153	Labrus_bergylta
ENSXMAG00000005537	prdm12b	100	79.003	ENSLBEG00000007776	-	100	78.947	Labrus_bergylta
ENSXMAG00000005537	prdm12b	100	80.000	ENSLACG00000017560	PRDM12	99	79.200	Latimeria_chalumnae
ENSXMAG00000005537	prdm12b	100	82.133	ENSLOCG00000005429	prdm12b	99	82.133	Lepisosteus_oculatus
ENSXMAG00000005537	prdm12b	91	81.232	ENSLAFG00000006979	PRDM12	90	81.657	Loxodonta_africana
ENSXMAG00000005537	prdm12b	91	81.818	ENSMFAG00000040322	PRDM12	88	82.934	Macaca_fascicularis
ENSXMAG00000005537	prdm12b	91	82.111	ENSMNEG00000037234	PRDM12	99	77.067	Macaca_nemestrina
ENSXMAG00000005537	prdm12b	100	74.372	ENSMAMG00000018988	-	100	74.372	Mastacembelus_armatus
ENSXMAG00000005537	prdm12b	100	88.947	ENSMAMG00000013212	prdm12b	100	89.153	Mastacembelus_armatus
ENSXMAG00000005537	prdm12b	100	76.692	ENSMZEG00005000415	PRDM12	100	76.382	Maylandia_zebra
ENSXMAG00000005537	prdm12b	97	80.939	ENSMGAG00000005438	PRDM12	91	85.329	Meleagris_gallopavo
ENSXMAG00000005537	prdm12b	100	77.454	ENSMAUG00000013040	Prdm12	89	83.234	Mesocricetus_auratus
ENSXMAG00000005537	prdm12b	91	82.111	ENSMICG00000015480	PRDM12	90	83.234	Microcebus_murinus
ENSXMAG00000005537	prdm12b	100	76.533	ENSMOCG00000021026	Prdm12	90	82.840	Microtus_ochrogaster
ENSXMAG00000005537	prdm12b	100	78.933	ENSMODG00000012108	PRDM12	99	77.660	Monodelphis_domestica
ENSXMAG00000005537	prdm12b	100	75.332	ENSMALG00000021901	prdm12b	99	74.667	Monopterus_albus
ENSXMAG00000005537	prdm12b	91	82.111	MGP_CAROLIEiJ_G0023414	Prdm12	89	83.234	Mus_caroli
ENSXMAG00000005537	prdm12b	91	82.111	ENSMUSG00000079466	Prdm12	89	83.234	Mus_musculus
ENSXMAG00000005537	prdm12b	91	82.111	MGP_PahariEiJ_G0024871	Prdm12	89	83.234	Mus_pahari
ENSXMAG00000005537	prdm12b	91	82.111	MGP_SPRETEiJ_G0024331	Prdm12	89	83.234	Mus_spretus
ENSXMAG00000005537	prdm12b	89	82.934	ENSNGAG00000018480	Prdm12	92	82.934	Nannospalax_galili
ENSXMAG00000005537	prdm12b	100	71.688	ENSNBRG00000024312	-	100	71.688	Neolamprologus_brichardi
ENSXMAG00000005537	prdm12b	100	88.251	ENSNBRG00000006727	prdm12b	100	88.251	Neolamprologus_brichardi
ENSXMAG00000005537	prdm12b	100	70.667	ENSMEUG00000003828	PRDM12	99	69.415	Notamacropus_eugenii
ENSXMAG00000005537	prdm12b	89	83.234	ENSOPRG00000008680	PRDM12	99	82.544	Ochotona_princeps
ENSXMAG00000005537	prdm12b	94	80.682	ENSODEG00000016282	PRDM12	62	82.249	Octodon_degus
ENSXMAG00000005537	prdm12b	64	75.732	ENSOANG00000001043	PRDM12	100	74.059	Ornithorhynchus_anatinus
ENSXMAG00000005537	prdm12b	82	82.524	ENSOCUG00000008241	PRDM12	96	82.524	Oryctolagus_cuniculus
ENSXMAG00000005537	prdm12b	100	86.684	ENSORLG00000007114	prdm12b	99	85.864	Oryzias_latipes
ENSXMAG00000005537	prdm12b	100	77.436	ENSORLG00000017558	-	100	76.923	Oryzias_latipes
ENSXMAG00000005537	prdm12b	100	86.126	ENSORLG00020019565	prdm12b	99	86.387	Oryzias_latipes_hni
ENSXMAG00000005537	prdm12b	100	76.982	ENSORLG00020013167	-	100	77.494	Oryzias_latipes_hni
ENSXMAG00000005537	prdm12b	100	77.436	ENSORLG00015003435	-	100	76.923	Oryzias_latipes_hsok
ENSXMAG00000005537	prdm12b	100	85.677	ENSORLG00015007621	prdm12b	99	86.126	Oryzias_latipes_hsok
ENSXMAG00000005537	prdm12b	100	76.546	ENSOMEG00000007762	-	100	76.804	Oryzias_melastigma
ENSXMAG00000005537	prdm12b	100	86.010	ENSOMEG00000004134	prdm12b	99	86.753	Oryzias_melastigma
ENSXMAG00000005537	prdm12b	91	82.111	ENSOGAG00000007557	PRDM12	98	82.544	Otolemur_garnettii
ENSXMAG00000005537	prdm12b	79	81.081	ENSPPAG00000031506	-	99	79.801	Pan_paniscus
ENSXMAG00000005537	prdm12b	100	71.277	ENSPPRG00000023024	PRDM12	83	76.716	Panthera_pardus
ENSXMAG00000005537	prdm12b	91	82.111	ENSPTRG00000043324	-	99	77.067	Pan_troglodytes
ENSXMAG00000005537	prdm12b	91	82.111	ENSPTRG00000021475	PRDM12	99	77.067	Pan_troglodytes
ENSXMAG00000005537	prdm12b	91	82.111	ENSPANG00000025967	PRDM12	99	77.067	Papio_anubis
ENSXMAG00000005537	prdm12b	94	77.557	ENSPKIG00000004305	PRDM12	94	81.737	Paramormyrops_kingsleyae
ENSXMAG00000005537	prdm12b	100	83.777	ENSPKIG00000007228	prdm12b	100	83.777	Paramormyrops_kingsleyae
ENSXMAG00000005537	prdm12b	100	78.933	ENSPSIG00000006739	PRDM12	99	77.867	Pelodiscus_sinensis
ENSXMAG00000005537	prdm12b	100	74.555	ENSPMGG00000002356	-	100	74.555	Periophthalmus_magnuspinnatus
ENSXMAG00000005537	prdm12b	100	85.904	ENSPMGG00000008867	prdm12b	99	86.436	Periophthalmus_magnuspinnatus
ENSXMAG00000005537	prdm12b	96	78.415	ENSPEMG00000009969	Prdm12	90	82.544	Peromyscus_maniculatus_bairdii
ENSXMAG00000005537	prdm12b	100	78.933	ENSPCIG00000024119	PRDM12	99	77.660	Phascolarctos_cinereus
ENSXMAG00000005537	prdm12b	100	96.286	ENSPFOG00000019841	prdm12b	100	96.286	Poecilia_formosa
ENSXMAG00000005537	prdm12b	100	96.579	ENSPLAG00000016626	prdm12b	99	96.579	Poecilia_latipinna
ENSXMAG00000005537	prdm12b	97	96.730	ENSPMEG00000016698	prdm12b	99	96.730	Poecilia_mexicana
ENSXMAG00000005537	prdm12b	95	74.590	ENSPREG00000003211	-	94	74.044	Poecilia_reticulata
ENSXMAG00000005537	prdm12b	100	96.325	ENSPREG00000015073	prdm12b	99	96.325	Poecilia_reticulata
ENSXMAG00000005537	prdm12b	93	80.802	ENSPPYG00000019694	PRDM12	92	83.234	Pongo_abelii
ENSXMAG00000005537	prdm12b	91	82.111	ENSPCOG00000022255	PRDM12	99	77.600	Propithecus_coquereli
ENSXMAG00000005537	prdm12b	91	82.111	ENSPVAG00000001511	PRDM12	99	77.600	Pteropus_vampyrus
ENSXMAG00000005537	prdm12b	100	88.482	ENSPNYG00000009607	prdm12b	100	87.958	Pundamilia_nyererei
ENSXMAG00000005537	prdm12b	100	76.692	ENSPNYG00000013589	-	100	75.126	Pundamilia_nyererei
ENSXMAG00000005537	prdm12b	100	83.200	ENSPNAG00000024532	prdm12b	100	83.200	Pygocentrus_nattereri
ENSXMAG00000005537	prdm12b	100	78.740	ENSPNAG00000013396	PRDM12	100	78.740	Pygocentrus_nattereri
ENSXMAG00000005537	prdm12b	91	82.111	ENSRNOG00000009218	Prdm12	89	83.234	Rattus_norvegicus
ENSXMAG00000005537	prdm12b	87	83.129	ENSRBIG00000042712	PRDM12	88	82.424	Rhinopithecus_bieti
ENSXMAG00000005537	prdm12b	88	83.333	ENSRROG00000043554	PRDM12	99	83.333	Rhinopithecus_roxellana
ENSXMAG00000005537	prdm12b	100	78.457	ENSSHAG00000015972	PRDM12	99	77.188	Sarcophilus_harrisii
ENSXMAG00000005537	prdm12b	100	87.147	ENSSMAG00000003754	prdm12b	100	86.375	Scophthalmus_maximus
ENSXMAG00000005537	prdm12b	100	86.889	ENSSDUG00000023498	prdm12b	100	86.305	Seriola_dumerili
ENSXMAG00000005537	prdm12b	100	79.634	ENSSDUG00000019071	-	100	79.634	Seriola_dumerili
ENSXMAG00000005537	prdm12b	100	88.083	ENSSLDG00000009557	prdm12b	100	88.021	Seriola_lalandi_dorsalis
ENSXMAG00000005537	prdm12b	100	77.394	ENSSLDG00000013562	-	100	77.128	Seriola_lalandi_dorsalis
ENSXMAG00000005537	prdm12b	100	78.400	ENSSPUG00000013424	PRDM12	99	77.600	Sphenodon_punctatus
ENSXMAG00000005537	prdm12b	100	71.466	ENSSPAG00000022420	-	100	71.466	Stegastes_partitus
ENSXMAG00000005537	prdm12b	100	87.728	ENSSPAG00000018824	prdm12b	100	88.512	Stegastes_partitus
ENSXMAG00000005537	prdm12b	91	82.111	ENSSSCG00000005703	PRDM12	99	77.333	Sus_scrofa
ENSXMAG00000005537	prdm12b	100	77.778	ENSTRUG00000013239	-	100	77.513	Takifugu_rubripes
ENSXMAG00000005537	prdm12b	100	85.752	ENSTRUG00000018659	prdm12b	100	85.942	Takifugu_rubripes
ENSXMAG00000005537	prdm12b	100	75.526	ENSTNIG00000005859	-	99	74.737	Tetraodon_nigroviridis
ENSXMAG00000005537	prdm12b	100	85.224	ENSTNIG00000009020	prdm12b	99	85.146	Tetraodon_nigroviridis
ENSXMAG00000005537	prdm12b	91	82.111	ENSUAMG00000009653	PRDM12	91	82.544	Ursus_americanus
ENSXMAG00000005537	prdm12b	91	82.111	ENSVVUG00000027662	PRDM12	78	82.544	Vulpes_vulpes
ENSXMAG00000005537	prdm12b	100	98.400	ENSXCOG00000002836	prdm12b	99	98.400	Xiphophorus_couchianus
ENSXMAG00000005537	prdm12b	100	75.434	ENSXMAG00000028012	-	100	75.000	Xiphophorus_maculatus