EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000005798 (Gene tree)
Gene ID: 102228849
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 14837 bases
Position: chr13:15562779-15577615
Accession: 102228849
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000005846	CPSF_A	PF03178.15	6e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000005852	-	4278	XM_023345182	ENSXMAP00000005846	1425 (aa)	XP_023200950	M3ZUF3

Gene Model

Click here to download ENSXMAG00000005798's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000005798's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000005798	cpsf1	100	76.881	ENSG00000071894	CPSF1	100	76.881	Homo_sapiens
ENSXMAG00000005798	cpsf1	100	87.508	ENSAPOG00000019621	cpsf1	100	87.441	Acanthochromis_polyacanthus
ENSXMAG00000005798	cpsf1	96	76.818	ENSAMEG00000005557	CPSF1	99	76.602	Ailuropoda_melanoleuca
ENSXMAG00000005798	cpsf1	100	87.352	ENSACIG00000006112	cpsf1	100	87.352	Amphilophus_citrinellus
ENSXMAG00000005798	cpsf1	100	87.776	ENSAOCG00000007120	cpsf1	100	87.638	Amphiprion_ocellaris
ENSXMAG00000005798	cpsf1	100	88.552	ENSAPEG00000005755	cpsf1	100	88.414	Amphiprion_percula
ENSXMAG00000005798	cpsf1	100	86.305	ENSATEG00000011097	cpsf1	100	86.644	Anabas_testudineus
ENSXMAG00000005798	cpsf1	93	73.516	ENSACAG00000009655	CPSF1	100	73.220	Anolis_carolinensis
ENSXMAG00000005798	cpsf1	100	77.210	ENSANAG00000036514	CPSF1	100	77.279	Aotus_nancymaae
ENSXMAG00000005798	cpsf1	100	85.983	ENSACLG00000012231	cpsf1	100	86.123	Astatotilapia_calliptera
ENSXMAG00000005798	cpsf1	100	77.368	ENSAMXG00000008485	cpsf1	100	77.159	Astyanax_mexicanus
ENSXMAG00000005798	cpsf1	100	75.729	ENSBTAG00000008355	CPSF1	100	76.758	Bos_taurus
ENSXMAG00000005798	cpsf1	100	32.580	WBGene00022301	cpsf-1	99	40.395	Caenorhabditis_elegans
ENSXMAG00000005798	cpsf1	100	77.279	ENSCJAG00000021421	CPSF1	100	77.003	Callithrix_jacchus
ENSXMAG00000005798	cpsf1	96	78.098	ENSCAFG00000001600	CPSF1	100	77.628	Canis_familiaris
ENSXMAG00000005798	cpsf1	100	77.172	ENSCAFG00020020821	CPSF1	100	77.310	Canis_lupus_dingo
ENSXMAG00000005798	cpsf1	100	74.030	ENSCHIG00000015833	CPSF1	100	73.615	Capra_hircus
ENSXMAG00000005798	cpsf1	100	77.624	ENSTSYG00000028560	CPSF1	100	77.348	Carlito_syrichta
ENSXMAG00000005798	cpsf1	96	77.498	ENSCAPG00000014921	CPSF1	99	77.283	Cavia_aperea
ENSXMAG00000005798	cpsf1	100	76.174	ENSCPOG00000011448	CPSF1	100	75.967	Cavia_porcellus
ENSXMAG00000005798	cpsf1	100	77.417	ENSCCAG00000037658	CPSF1	100	77.141	Cebus_capucinus
ENSXMAG00000005798	cpsf1	100	76.759	ENSCATG00000037234	CPSF1	100	76.934	Cercocebus_atys
ENSXMAG00000005798	cpsf1	100	77.402	ENSCLAG00000012166	CPSF1	100	77.194	Chinchilla_lanigera
ENSXMAG00000005798	cpsf1	100	77.210	ENSCSAG00000008502	CPSF1	100	76.934	Chlorocebus_sabaeus
ENSXMAG00000005798	cpsf1	99	79.204	ENSCPBG00000018910	CPSF1	96	79.204	Chrysemys_picta_bellii
ENSXMAG00000005798	cpsf1	96	48.518	ENSCING00000000514	-	100	48.228	Ciona_intestinalis
ENSXMAG00000005798	cpsf1	99	49.134	ENSCSAVG00000002293	-	99	50.233	Ciona_savignyi
ENSXMAG00000005798	cpsf1	96	75.305	ENSCANG00000032760	CPSF1	100	76.852	Colobus_angolensis_palliatus
ENSXMAG00000005798	cpsf1	100	77.125	ENSCGRG00001016344	Cpsf1	100	76.849	Cricetulus_griseus_chok1gshd
ENSXMAG00000005798	cpsf1	100	75.259	ENSCGRG00000003118	Cpsf1	100	74.845	Cricetulus_griseus_crigri
ENSXMAG00000005798	cpsf1	100	86.103	ENSCSEG00000013464	cpsf1	100	86.103	Cynoglossus_semilaevis
ENSXMAG00000005798	cpsf1	85	92.246	ENSCVAG00000014059	cpsf1	100	86.574	Cyprinodon_variegatus
ENSXMAG00000005798	cpsf1	100	84.631	ENSDARG00000034178	cpsf1	100	84.425	Danio_rerio
ENSXMAG00000005798	cpsf1	56	80.636	ENSDNOG00000043654	CPSF1	94	80.347	Dasypus_novemcinctus
ENSXMAG00000005798	cpsf1	96	78.017	ENSDORG00000006278	Cpsf1	99	77.945	Dipodomys_ordii
ENSXMAG00000005798	cpsf1	100	44.708	FBgn0024698	Cpsf160	100	44.700	Drosophila_melanogaster
ENSXMAG00000005798	cpsf1	80	81.208	ENSETEG00000006022	CPSF1	83	81.208	Echinops_telfairi
ENSXMAG00000005798	cpsf1	100	77.103	ENSEASG00005010774	CPSF1	100	77.103	Equus_asinus_asinus
ENSXMAG00000005798	cpsf1	100	77.034	ENSECAG00000022209	CPSF1	100	77.034	Equus_caballus
ENSXMAG00000005798	cpsf1	100	77.188	ENSEEUG00000000471	CPSF1	100	77.050	Erinaceus_europaeus
ENSXMAG00000005798	cpsf1	100	83.702	ENSELUG00000012271	cpsf1	100	83.702	Esox_lucius
ENSXMAG00000005798	cpsf1	100	77.562	ENSFDAG00000016060	CPSF1	100	77.285	Fukomys_damarensis
ENSXMAG00000005798	cpsf1	100	92.318	ENSFHEG00000016801	cpsf1	100	92.318	Fundulus_heteroclitus
ENSXMAG00000005798	cpsf1	100	84.807	ENSGMOG00000000796	cpsf1	100	84.509	Gadus_morhua
ENSXMAG00000005798	cpsf1	94	96.423	ENSGAFG00000018890	cpsf1	99	96.423	Gambusia_affinis
ENSXMAG00000005798	cpsf1	100	87.741	ENSGACG00000008703	cpsf1	100	87.647	Gasterosteus_aculeatus
ENSXMAG00000005798	cpsf1	100	76.487	ENSGAGG00000004276	CPSF1	98	80.602	Gopherus_agassizii
ENSXMAG00000005798	cpsf1	100	77.056	ENSGGOG00000016185	CPSF1	100	77.056	Gorilla_gorilla
ENSXMAG00000005798	cpsf1	100	88.796	ENSHBUG00000018900	cpsf1	100	88.657	Haplochromis_burtoni
ENSXMAG00000005798	cpsf1	100	77.439	ENSHGLG00000016139	CPSF1	100	77.232	Heterocephalus_glaber_female
ENSXMAG00000005798	cpsf1	100	77.370	ENSHGLG00100009750	CPSF1	100	77.163	Heterocephalus_glaber_male
ENSXMAG00000005798	cpsf1	100	85.597	ENSHCOG00000018509	cpsf1	100	85.861	Hippocampus_comes
ENSXMAG00000005798	cpsf1	100	80.426	ENSIPUG00000011259	cpsf1	100	80.357	Ictalurus_punctatus
ENSXMAG00000005798	cpsf1	96	77.523	ENSSTOG00000009957	CPSF1	99	77.380	Ictidomys_tridecemlineatus
ENSXMAG00000005798	cpsf1	100	77.355	ENSJJAG00000023002	Cpsf1	100	77.285	Jaculus_jaculus
ENSXMAG00000005798	cpsf1	91	94.984	ENSKMAG00000001940	cpsf1	99	94.984	Kryptolebias_marmoratus
ENSXMAG00000005798	cpsf1	100	86.528	ENSLBEG00000003601	cpsf1	100	86.736	Labrus_bergylta
ENSXMAG00000005798	cpsf1	100	66.048	ENSLACG00000000233	CPSF1	100	66.276	Latimeria_chalumnae
ENSXMAG00000005798	cpsf1	100	81.061	ENSLOCG00000008484	cpsf1	100	80.923	Lepisosteus_oculatus
ENSXMAG00000005798	cpsf1	96	77.882	ENSLAFG00000022601	CPSF1	99	77.738	Loxodonta_africana
ENSXMAG00000005798	cpsf1	100	76.934	ENSMFAG00000037013	CPSF1	100	77.003	Macaca_fascicularis
ENSXMAG00000005798	cpsf1	100	77.115	ENSMMUG00000007380	CPSF1	100	77.184	Macaca_mulatta
ENSXMAG00000005798	cpsf1	96	77.818	ENSMNEG00000043564	CPSF1	99	77.889	Macaca_nemestrina
ENSXMAG00000005798	cpsf1	100	76.865	ENSMLEG00000043010	CPSF1	100	76.934	Mandrillus_leucophaeus
ENSXMAG00000005798	cpsf1	100	86.897	ENSMAMG00000003803	cpsf1	100	87.033	Mastacembelus_armatus
ENSXMAG00000005798	cpsf1	100	86.053	ENSMZEG00005001168	cpsf1	100	86.192	Maylandia_zebra
ENSXMAG00000005798	cpsf1	100	77.125	ENSMAUG00000003601	Cpsf1	100	76.918	Mesocricetus_auratus
ENSXMAG00000005798	cpsf1	100	77.263	ENSMICG00000015767	CPSF1	100	77.125	Microcebus_murinus
ENSXMAG00000005798	cpsf1	100	77.332	ENSMOCG00000022758	Cpsf1	100	77.125	Microtus_ochrogaster
ENSXMAG00000005798	cpsf1	100	89.679	ENSMMOG00000021245	cpsf1	100	89.540	Mola_mola
ENSXMAG00000005798	cpsf1	100	77.357	ENSMODG00000010755	CPSF1	100	77.564	Monodelphis_domestica
ENSXMAG00000005798	cpsf1	100	86.889	ENSMALG00000020545	cpsf1	100	86.472	Monopterus_albus
ENSXMAG00000005798	cpsf1	100	77.370	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.163	Mus_caroli
ENSXMAG00000005798	cpsf1	100	77.301	ENSMUSG00000034022	Cpsf1	100	77.093	Mus_musculus
ENSXMAG00000005798	cpsf1	100	77.439	MGP_PahariEiJ_G0019946	Cpsf1	100	77.232	Mus_pahari
ENSXMAG00000005798	cpsf1	100	77.370	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.163	Mus_spretus
ENSXMAG00000005798	cpsf1	94	77.975	ENSMPUG00000006419	CPSF1	93	78.049	Mustela_putorius_furo
ENSXMAG00000005798	cpsf1	100	77.088	ENSNGAG00000022460	Cpsf1	100	76.881	Nannospalax_galili
ENSXMAG00000005798	cpsf1	100	82.962	ENSNBRG00000000813	cpsf1	100	83.194	Neolamprologus_brichardi
ENSXMAG00000005798	cpsf1	86	66.667	ENSNLEG00000010633	-	100	76.389	Nomascus_leucogenys
ENSXMAG00000005798	cpsf1	81	82.558	ENSMEUG00000014922	CPSF1	84	82.558	Notamacropus_eugenii
ENSXMAG00000005798	cpsf1	60	87.368	ENSOPRG00000004693	-	70	87.368	Ochotona_princeps
ENSXMAG00000005798	cpsf1	100	77.471	ENSODEG00000013995	CPSF1	100	77.263	Octodon_degus
ENSXMAG00000005798	cpsf1	100	88.565	ENSONIG00000007676	cpsf1	100	88.427	Oreochromis_niloticus
ENSXMAG00000005798	cpsf1	58	77.857	ENSOANG00000010716	CPSF1	89	77.857	Ornithorhynchus_anatinus
ENSXMAG00000005798	cpsf1	100	88.934	ENSORLG00000013544	cpsf1	100	88.593	Oryzias_latipes
ENSXMAG00000005798	cpsf1	100	88.866	ENSORLG00020021693	cpsf1	100	88.593	Oryzias_latipes_hni
ENSXMAG00000005798	cpsf1	100	88.798	ENSORLG00015009979	cpsf1	100	88.456	Oryzias_latipes_hsok
ENSXMAG00000005798	cpsf1	100	87.782	ENSOMEG00000011849	cpsf1	100	87.910	Oryzias_melastigma
ENSXMAG00000005798	cpsf1	100	77.624	ENSOGAG00000000315	CPSF1	100	77.348	Otolemur_garnettii
ENSXMAG00000005798	cpsf1	100	77.072	ENSPPAG00000019280	CPSF1	100	77.828	Pan_paniscus
ENSXMAG00000005798	cpsf1	100	77.072	ENSPTRG00000049288	-	100	77.828	Pan_troglodytes
ENSXMAG00000005798	cpsf1	100	75.764	ENSPTRG00000051253	-	100	77.828	Pan_troglodytes
ENSXMAG00000005798	cpsf1	96	77.818	ENSPANG00000015005	CPSF1	99	77.889	Papio_anubis
ENSXMAG00000005798	cpsf1	100	84.243	ENSPKIG00000002582	cpsf1	100	84.429	Paramormyrops_kingsleyae
ENSXMAG00000005798	cpsf1	100	77.564	ENSPCIG00000009035	CPSF1	100	77.770	Phascolarctos_cinereus
ENSXMAG00000005798	cpsf1	100	94.290	ENSPFOG00000012870	cpsf1	100	94.290	Poecilia_formosa
ENSXMAG00000005798	cpsf1	100	94.740	ENSPREG00000016307	cpsf1	100	94.740	Poecilia_reticulata
ENSXMAG00000005798	cpsf1	100	71.024	ENSPPYG00000018973	CPSF1	100	70.609	Pongo_abelii
ENSXMAG00000005798	cpsf1	90	83.239	ENSPCAG00000011541	CPSF1	93	83.239	Procavia_capensis
ENSXMAG00000005798	cpsf1	100	74.171	ENSPCOG00000020001	CPSF1	100	76.389	Propithecus_coquereli
ENSXMAG00000005798	cpsf1	90	85.429	ENSPVAG00000006761	CPSF1	91	85.429	Pteropus_vampyrus
ENSXMAG00000005798	cpsf1	100	87.569	ENSPNYG00000004906	cpsf1	100	87.431	Pundamilia_nyererei
ENSXMAG00000005798	cpsf1	100	79.986	ENSPNAG00000024395	cpsf1	100	79.778	Pygocentrus_nattereri
ENSXMAG00000005798	cpsf1	100	77.408	ENSRNOG00000030705	Cpsf1	100	77.200	Rattus_norvegicus
ENSXMAG00000005798	cpsf1	100	76.934	ENSRBIG00000044907	CPSF1	100	76.934	Rhinopithecus_bieti
ENSXMAG00000005798	cpsf1	100	77.003	ENSRROG00000044861	CPSF1	100	77.003	Rhinopithecus_roxellana
ENSXMAG00000005798	cpsf1	96	78.105	ENSSBOG00000027177	CPSF1	99	77.818	Saimiri_boliviensis_boliviensis
ENSXMAG00000005798	cpsf1	100	77.357	ENSSHAG00000006500	CPSF1	100	77.495	Sarcophilus_harrisii
ENSXMAG00000005798	cpsf1	100	81.919	ENSSFOG00015004606	cpsf1	100	84.778	Scleropages_formosus
ENSXMAG00000005798	cpsf1	100	87.016	ENSSMAG00000020547	cpsf1	100	87.152	Scophthalmus_maximus
ENSXMAG00000005798	cpsf1	100	90.084	ENSSDUG00000001100	cpsf1	100	89.874	Seriola_dumerili
ENSXMAG00000005798	cpsf1	100	89.679	ENSSLDG00000003619	cpsf1	100	89.540	Seriola_lalandi_dorsalis
ENSXMAG00000005798	cpsf1	89	74.417	ENSSARG00000003643	CPSF1	92	74.175	Sorex_araneus
ENSXMAG00000005798	cpsf1	96	79.828	ENSSPUG00000014396	CPSF1	100	79.942	Sphenodon_punctatus
ENSXMAG00000005798	cpsf1	100	87.500	ENSSPAG00000005349	cpsf1	100	87.432	Stegastes_partitus
ENSXMAG00000005798	cpsf1	100	76.657	ENSSSCG00000005906	CPSF1	100	76.381	Sus_scrofa
ENSXMAG00000005798	cpsf1	96	86.357	ENSTRUG00000013134	cpsf1	99	85.724	Takifugu_rubripes
ENSXMAG00000005798	cpsf1	100	86.882	ENSTNIG00000014027	cpsf1	100	86.598	Tetraodon_nigroviridis
ENSXMAG00000005798	cpsf1	77	72.318	ENSTBEG00000001756	CPSF1	91	71.626	Tupaia_belangeri
ENSXMAG00000005798	cpsf1	89	82.465	ENSTTRG00000001937	CPSF1	89	82.292	Tursiops_truncatus
ENSXMAG00000005798	cpsf1	96	78.386	ENSUAMG00000006476	CPSF1	97	78.170	Ursus_americanus
ENSXMAG00000005798	cpsf1	100	98.116	ENSXCOG00000003608	cpsf1	100	98.116	Xiphophorus_couchianus