EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000005914 (Gene tree)
Gene ID: 102229852
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 10335 bases
Position: chr9:11070061-11080395
Accession: 102229852
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000005939	RRM_1	PF00076.22	4.3e-61	1	4
ENSXMAP00000005939	RRM_1	PF00076.22	4.3e-61	2	4
ENSXMAP00000005939	RRM_1	PF00076.22	4.3e-61	3	4
ENSXMAP00000005939	RRM_1	PF00076.22	4.3e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000005945	-	6380	XM_005800317	ENSXMAP00000005939	732 (aa)	XP_005800374	M3ZUP6

Gene Model

Click here to download ENSXMAG00000005914's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000005914's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000005914	ncl	54	42.755	ENSAPOG00000014534	-	67	42.640	Acanthochromis_polyacanthus
ENSXMAG00000005914	ncl	58	82.701	ENSAPOG00000023888	ncl	56	83.733	Acanthochromis_polyacanthus
ENSXMAG00000005914	ncl	51	76.330	ENSACIG00000013234	ncl	62	76.533	Amphilophus_citrinellus
ENSXMAG00000005914	ncl	52	41.414	ENSAOCG00000014792	-	61	41.602	Amphiprion_ocellaris
ENSXMAG00000005914	ncl	52	41.667	ENSAPEG00000013612	-	60	41.860	Amphiprion_percula
ENSXMAG00000005914	ncl	58	84.123	ENSAPEG00000002769	ncl	65	81.034	Amphiprion_percula
ENSXMAG00000005914	ncl	63	80.388	ENSATEG00000013343	ncl	66	79.310	Anabas_testudineus
ENSXMAG00000005914	ncl	63	42.137	ENSATEG00000019862	-	80	45.995	Anabas_testudineus
ENSXMAG00000005914	ncl	51	58.901	ENSAPLG00000012897	-	63	59.948	Anas_platyrhynchos
ENSXMAG00000005914	ncl	51	64.042	ENSACAG00000001006	-	52	63.947	Anolis_carolinensis
ENSXMAG00000005914	ncl	56	68.537	ENSAMXG00000001647	ncl	84	72.910	Astyanax_mexicanus
ENSXMAG00000005914	ncl	58	60.179	ENSCPBG00000016444	-	56	63.061	Chrysemys_picta_bellii
ENSXMAG00000005914	ncl	52	80.779	ENSCSEG00000015089	ncl	61	79.327	Cynoglossus_semilaevis
ENSXMAG00000005914	ncl	66	87.927	ENSCVAG00000012600	ncl	77	88.060	Cyprinodon_variegatus
ENSXMAG00000005914	ncl	58	75.644	ENSDARG00000002710	ncl	83	78.275	Danio_rerio
ENSXMAG00000005914	ncl	63	44.695	ENSDNOG00000040257	-	63	45.573	Dasypus_novemcinctus
ENSXMAG00000005914	ncl	61	46.563	ENSELUG00000022826	-	80	49.330	Esox_lucius
ENSXMAG00000005914	ncl	58	73.039	ENSELUG00000006033	ncl	51	32.932	Esox_lucius
ENSXMAG00000005914	ncl	51	60.104	ENSFALG00000007592	-	55	60.363	Ficedula_albicollis
ENSXMAG00000005914	ncl	51	82.400	ENSFHEG00000018000	ncl	73	81.304	Fundulus_heteroclitus
ENSXMAG00000005914	ncl	52	68.421	ENSGMOG00000001341	ncl	59	68.097	Gadus_morhua
ENSXMAG00000005914	ncl	51	61.097	ENSGALG00000032930	NCL	55	61.097	Gallus_gallus
ENSXMAG00000005914	ncl	70	88.544	ENSGAFG00000015375	ncl	62	93.696	Gambusia_affinis
ENSXMAG00000005914	ncl	90	68.771	ENSGACG00000008970	ncl	61	77.867	Gasterosteus_aculeatus
ENSXMAG00000005914	ncl	51	77.568	ENSHBUG00000006869	ncl	66	74.730	Haplochromis_burtoni
ENSXMAG00000005914	ncl	69	75.835	ENSHCOG00000010234	ncl	53	81.649	Hippocampus_comes
ENSXMAG00000005914	ncl	72	82.938	ENSKMAG00000008111	ncl	54	84.492	Kryptolebias_marmoratus
ENSXMAG00000005914	ncl	63	41.597	ENSLBEG00000007915	-	66	44.473	Labrus_bergylta
ENSXMAG00000005914	ncl	58	82.243	ENSLBEG00000019073	ncl	57	83.202	Labrus_bergylta
ENSXMAG00000005914	ncl	53	53.333	ENSLACG00000022167	-	76	54.722	Latimeria_chalumnae
ENSXMAG00000005914	ncl	58	63.403	ENSLACG00000009328	ncl	72	66.310	Latimeria_chalumnae
ENSXMAG00000005914	ncl	59	65.287	ENSLOCG00000004828	ncl	68	64.158	Lepisosteus_oculatus
ENSXMAG00000005914	ncl	54	42.092	ENSMAMG00000003479	-	69	41.927	Mastacembelus_armatus
ENSXMAG00000005914	ncl	51	77.568	ENSMZEG00005017438	ncl	53	77.568	Maylandia_zebra
ENSXMAG00000005914	ncl	50	60.870	ENSMGAG00000008147	-	88	60.870	Meleagris_gallopavo
ENSXMAG00000005914	ncl	51	56.812	ENSMODG00000002470	-	54	56.923	Monodelphis_domestica
ENSXMAG00000005914	ncl	59	73.945	ENSMALG00000014827	ncl	58	82.051	Monopterus_albus
ENSXMAG00000005914	ncl	51	59.269	ENSMEUG00000012335	-	55	59.375	Notamacropus_eugenii
ENSXMAG00000005914	ncl	51	77.568	ENSONIG00000012508	ncl	59	77.488	Oreochromis_niloticus
ENSXMAG00000005914	ncl	52	38.786	ENSONIG00000010631	-	97	39.037	Oreochromis_niloticus
ENSXMAG00000005914	ncl	56	56.235	ENSOANG00000008732	-	61	60.513	Ornithorhynchus_anatinus
ENSXMAG00000005914	ncl	55	36.364	ENSORLG00000004645	-	88	37.440	Oryzias_latipes
ENSXMAG00000005914	ncl	50	85.286	ENSORLG00000007055	ncl	52	85.039	Oryzias_latipes
ENSXMAG00000005914	ncl	58	83.645	ENSORLG00020017943	ncl	52	85.039	Oryzias_latipes_hni
ENSXMAG00000005914	ncl	54	36.919	ENSORLG00020003497	-	74	37.984	Oryzias_latipes_hni
ENSXMAG00000005914	ncl	53	37.562	ENSORLG00015006613	-	77	38.243	Oryzias_latipes_hsok
ENSXMAG00000005914	ncl	58	79.907	ENSORLG00015013815	ncl	88	86.538	Oryzias_latipes_hsok
ENSXMAG00000005914	ncl	52	84.514	ENSOMEG00000020786	ncl	51	84.514	Oryzias_melastigma
ENSXMAG00000005914	ncl	52	37.438	ENSOMEG00000015864	-	81	37.306	Oryzias_melastigma
ENSXMAG00000005914	ncl	58	74.353	ENSPKIG00000002604	ncl	53	76.471	Paramormyrops_kingsleyae
ENSXMAG00000005914	ncl	58	75.650	ENSPMGG00000004709	ncl	83	76.774	Periophthalmus_magnuspinnatus
ENSXMAG00000005914	ncl	51	58.098	ENSPCIG00000003293	-	54	58.205	Phascolarctos_cinereus
ENSXMAG00000005914	ncl	65	93.671	ENSPFOG00000024205	ncl	64	93.235	Poecilia_formosa
ENSXMAG00000005914	ncl	63	94.577	ENSPLAG00000024026	ncl	62	94.348	Poecilia_latipinna
ENSXMAG00000005914	ncl	65	94.726	ENSPMEG00000006000	ncl	64	94.503	Poecilia_mexicana
ENSXMAG00000005914	ncl	51	77.568	ENSPNYG00000020494	ncl	53	77.568	Pundamilia_nyererei
ENSXMAG00000005914	ncl	53	51.698	ENSSHAG00000007489	-	50	51.894	Sarcophilus_harrisii
ENSXMAG00000005914	ncl	61	70.982	ENSSFOG00015008583	ncl	64	70.982	Scleropages_formosus
ENSXMAG00000005914	ncl	58	79.765	ENSSMAG00000021241	ncl	66	77.155	Scophthalmus_maximus
ENSXMAG00000005914	ncl	59	41.901	ENSSMAG00000007582	-	65	43.532	Scophthalmus_maximus
ENSXMAG00000005914	ncl	52	84.293	ENSSDUG00000006128	ncl	87	84.252	Seriola_dumerili
ENSXMAG00000005914	ncl	64	39.157	ENSSDUG00000010922	-	70	42.448	Seriola_dumerili
ENSXMAG00000005914	ncl	59	42.553	ENSSLDG00000015784	-	65	42.670	Seriola_lalandi_dorsalis
ENSXMAG00000005914	ncl	78	81.980	ENSSLDG00000002012	ncl	77	78.269	Seriola_lalandi_dorsalis
ENSXMAG00000005914	ncl	63	55.800	ENSSPUG00000008244	-	61	60.302	Sphenodon_punctatus
ENSXMAG00000005914	ncl	53	44.557	ENSSPAG00000001859	-	61	43.342	Stegastes_partitus
ENSXMAG00000005914	ncl	51	60.733	ENSTGUG00000009782	-	60	60.995	Taeniopygia_guttata
ENSXMAG00000005914	ncl	63	76.515	ENSTNIG00000012186	ncl	88	79.200	Tetraodon_nigroviridis
ENSXMAG00000005914	ncl	54	40.842	ENSXCOG00000007369	-	89	42.105	Xiphophorus_couchianus
ENSXMAG00000005914	ncl	73	57.662	ENSXCOG00000003524	ncl	99	80.000	Xiphophorus_couchianus