EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000005940 (Gene tree)
Gene ID: 102227931
Gene Symbol: ptcd2
Alias: zgc:112401
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 4661 bases
Position: chr8:19692698-19697358
Accession: 102227931
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000005962	MRP-S27	PF10037.9	5.9e-06	1	1
ENSXMAP00000039079	MRP-S27	PF10037.9	5.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000005968	-	1811	XM_023337852	ENSXMAP00000005962	421 (aa)	XP_023193620	M3ZUR9
ENSXMAT00000031154	-	2273	XM_014468653	ENSXMAP00000039079	421 (aa)	XP_014324139	UPI000C6D816C

Gene Model

Click here to download ENSXMAG00000005940's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000005940's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000005940	ptcd2	82	43.966	ENSG00000049883	PTCD2	100	38.889	Homo_sapiens
ENSXMAG00000005940	ptcd2	90	71.842	ENSAPOG00000020682	ptcd2	99	71.842	Acanthochromis_polyacanthus
ENSXMAG00000005940	ptcd2	82	44.413	ENSAMEG00000007194	PTCD2	84	44.954	Ailuropoda_melanoleuca
ENSXMAG00000005940	ptcd2	82	66.954	ENSACIG00000002053	ptcd2	100	66.954	Amphilophus_citrinellus
ENSXMAG00000005940	ptcd2	92	73.265	ENSAOCG00000006616	ptcd2	99	73.265	Amphiprion_ocellaris
ENSXMAG00000005940	ptcd2	92	73.265	ENSAPEG00000022926	ptcd2	99	73.265	Amphiprion_percula
ENSXMAG00000005940	ptcd2	82	47.262	ENSACAG00000009747	PTCD2	89	47.262	Anolis_carolinensis
ENSXMAG00000005940	ptcd2	82	43.678	ENSANAG00000029353	PTCD2	83	44.410	Aotus_nancymaae
ENSXMAG00000005940	ptcd2	92	75.064	ENSACLG00000027742	ptcd2	99	75.064	Astatotilapia_calliptera
ENSXMAG00000005940	ptcd2	85	49.724	ENSAMXG00000029404	ptcd2	91	50.888	Astyanax_mexicanus
ENSXMAG00000005940	ptcd2	87	42.632	ENSBTAG00000014675	PTCD2	93	42.897	Bos_taurus
ENSXMAG00000005940	ptcd2	82	42.529	ENSCJAG00000016364	PTCD2	83	43.478	Callithrix_jacchus
ENSXMAG00000005940	ptcd2	83	45.609	ENSCAFG00000007982	PTCD2	77	47.866	Canis_familiaris
ENSXMAG00000005940	ptcd2	82	45.665	ENSCAFG00020019147	PTCD2	91	46.462	Canis_lupus_dingo
ENSXMAG00000005940	ptcd2	84	44.044	ENSCHIG00000017118	PTCD2	89	44.412	Capra_hircus
ENSXMAG00000005940	ptcd2	85	42.318	ENSCPOG00000040168	PTCD2	90	43.478	Cavia_porcellus
ENSXMAG00000005940	ptcd2	65	45.985	ENSCCAG00000021996	-	84	45.985	Cebus_capucinus
ENSXMAG00000005940	ptcd2	82	43.391	ENSCCAG00000029389	-	83	44.099	Cebus_capucinus
ENSXMAG00000005940	ptcd2	88	43.817	ENSCATG00000019069	PTCD2	97	43.817	Cercocebus_atys
ENSXMAG00000005940	ptcd2	93	39.796	ENSCLAG00000000072	PTCD2	93	40.164	Chinchilla_lanigera
ENSXMAG00000005940	ptcd2	82	45.115	ENSCSAG00000015623	PTCD2	91	45.115	Chlorocebus_sabaeus
ENSXMAG00000005940	ptcd2	64	50.588	ENSCHOG00000010634	PTCD2	71	50.588	Choloepus_hoffmanni
ENSXMAG00000005940	ptcd2	82	46.991	ENSCPBG00000000216	PTCD2	85	46.349	Chrysemys_picta_bellii
ENSXMAG00000005940	ptcd2	82	44.828	ENSCANG00000035636	PTCD2	90	44.828	Colobus_angolensis_palliatus
ENSXMAG00000005940	ptcd2	84	44.959	ENSCGRG00001015289	Ptcd2	80	44.959	Cricetulus_griseus_chok1gshd
ENSXMAG00000005940	ptcd2	84	44.959	ENSCGRG00000006193	Ptcd2	80	44.959	Cricetulus_griseus_crigri
ENSXMAG00000005940	ptcd2	92	80.463	ENSCVAG00000001285	ptcd2	99	80.463	Cyprinodon_variegatus
ENSXMAG00000005940	ptcd2	86	50.689	ENSDARG00000035391	ptcd2	88	51.335	Danio_rerio
ENSXMAG00000005940	ptcd2	82	45.821	ENSDNOG00000008719	PTCD2	91	45.821	Dasypus_novemcinctus
ENSXMAG00000005940	ptcd2	86	44.077	ENSDORG00000004921	Ptcd2	93	44.077	Dipodomys_ordii
ENSXMAG00000005940	ptcd2	89	39.744	ENSETEG00000016542	PTCD2	93	40.220	Echinops_telfairi
ENSXMAG00000005940	ptcd2	87	43.501	ENSEASG00005018038	PTCD2	93	43.820	Equus_asinus_asinus
ENSXMAG00000005940	ptcd2	83	45.014	ENSECAG00000007022	PTCD2	85	45.455	Equus_caballus
ENSXMAG00000005940	ptcd2	85	43.767	ENSEEUG00000014031	PTCD2	84	44.512	Erinaceus_europaeus
ENSXMAG00000005940	ptcd2	87	59.128	ENSELUG00000003584	ptcd2	89	59.706	Esox_lucius
ENSXMAG00000005940	ptcd2	75	44.762	ENSFCAG00000045432	PTCD2	69	45.578	Felis_catus
ENSXMAG00000005940	ptcd2	77	43.119	ENSFALG00000010299	PTCD2	92	45.183	Ficedula_albicollis
ENSXMAG00000005940	ptcd2	84	42.535	ENSFDAG00000018461	PTCD2	86	43.598	Fukomys_damarensis
ENSXMAG00000005940	ptcd2	91	61.082	ENSGMOG00000003637	ptcd2	100	60.622	Gadus_morhua
ENSXMAG00000005940	ptcd2	84	43.503	ENSGALG00000038260	PTCD2	99	41.425	Gallus_gallus
ENSXMAG00000005940	ptcd2	82	51.003	ENSGAGG00000021952	PTCD2	89	51.003	Gopherus_agassizii
ENSXMAG00000005940	ptcd2	82	43.966	ENSGGOG00000010695	PTCD2	90	43.966	Gorilla_gorilla
ENSXMAG00000005940	ptcd2	92	74.550	ENSHBUG00000009191	ptcd2	99	74.550	Haplochromis_burtoni
ENSXMAG00000005940	ptcd2	86	42.204	ENSHGLG00000001234	PTCD2	90	43.188	Heterocephalus_glaber_female
ENSXMAG00000005940	ptcd2	86	42.204	ENSHGLG00100015419	PTCD2	90	43.188	Heterocephalus_glaber_male
ENSXMAG00000005940	ptcd2	90	61.880	ENSHCOG00000001703	ptcd2	99	61.880	Hippocampus_comes
ENSXMAG00000005940	ptcd2	76	57.453	ENSIPUG00000006080	ptcd2	94	53.591	Ictalurus_punctatus
ENSXMAG00000005940	ptcd2	82	43.553	ENSSTOG00000006596	PTCD2	91	43.553	Ictidomys_tridecemlineatus
ENSXMAG00000005940	ptcd2	82	46.991	ENSJJAG00000024388	Ptcd2	84	47.222	Jaculus_jaculus
ENSXMAG00000005940	ptcd2	91	63.446	ENSKMAG00000009329	ptcd2	95	64.738	Kryptolebias_marmoratus
ENSXMAG00000005940	ptcd2	93	64.286	ENSLBEG00000024871	ptcd2	100	64.286	Labrus_bergylta
ENSXMAG00000005940	ptcd2	89	53.989	ENSLOCG00000011122	ptcd2	98	53.989	Lepisosteus_oculatus
ENSXMAG00000005940	ptcd2	70	45.928	ENSLAFG00000004115	PTCD2	98	46.254	Loxodonta_africana
ENSXMAG00000005940	ptcd2	82	45.115	ENSMFAG00000031516	PTCD2	90	45.115	Macaca_fascicularis
ENSXMAG00000005940	ptcd2	82	45.402	ENSMNEG00000007537	PTCD2	91	45.402	Macaca_nemestrina
ENSXMAG00000005940	ptcd2	82	45.115	ENSMLEG00000031093	PTCD2	90	45.115	Mandrillus_leucophaeus
ENSXMAG00000005940	ptcd2	89	70.027	ENSMAMG00000018529	ptcd2	98	70.027	Mastacembelus_armatus
ENSXMAG00000005940	ptcd2	92	75.064	ENSMZEG00005003625	ptcd2	99	75.064	Maylandia_zebra
ENSXMAG00000005940	ptcd2	82	44.253	ENSMGAG00000005033	PTCD2	100	44.253	Meleagris_gallopavo
ENSXMAG00000005940	ptcd2	84	37.057	ENSMAUG00000020253	Ptcd2	96	37.057	Mesocricetus_auratus
ENSXMAG00000005940	ptcd2	82	44.540	ENSMICG00000004535	PTCD2	83	45.652	Microcebus_murinus
ENSXMAG00000005940	ptcd2	82	45.402	ENSMOCG00000019985	Ptcd2	91	45.402	Microtus_ochrogaster
ENSXMAG00000005940	ptcd2	84	47.472	ENSMODG00000001695	PTCD2	87	47.605	Monodelphis_domestica
ENSXMAG00000005940	ptcd2	91	70.496	ENSMALG00000022372	ptcd2	100	70.496	Monopterus_albus
ENSXMAG00000005940	ptcd2	82	43.966	MGP_CAROLIEiJ_G0018829	Ptcd2	91	43.966	Mus_caroli
ENSXMAG00000005940	ptcd2	82	43.678	ENSMUSG00000021650	Ptcd2	91	43.678	Mus_musculus
ENSXMAG00000005940	ptcd2	82	45.115	MGP_PahariEiJ_G0015904	Ptcd2	91	45.115	Mus_pahari
ENSXMAG00000005940	ptcd2	82	44.253	MGP_SPRETEiJ_G0019711	Ptcd2	91	44.253	Mus_spretus
ENSXMAG00000005940	ptcd2	82	45.559	ENSMPUG00000014401	PTCD2	85	46.177	Mustela_putorius_furo
ENSXMAG00000005940	ptcd2	82	44.253	ENSMLUG00000007374	PTCD2	90	42.980	Myotis_lucifugus
ENSXMAG00000005940	ptcd2	82	45.115	ENSNGAG00000005027	Ptcd2	91	45.115	Nannospalax_galili
ENSXMAG00000005940	ptcd2	90	75.526	ENSNBRG00000008174	ptcd2	99	75.526	Neolamprologus_brichardi
ENSXMAG00000005940	ptcd2	78	73.556	ENSNBRG00000000092	-	100	73.556	Neolamprologus_brichardi
ENSXMAG00000005940	ptcd2	82	43.516	ENSNLEG00000004516	PTCD2	89	43.516	Nomascus_leucogenys
ENSXMAG00000005940	ptcd2	82	45.977	ENSOPRG00000007290	PTCD2	83	47.516	Ochotona_princeps
ENSXMAG00000005940	ptcd2	85	43.869	ENSODEG00000016417	PTCD2	89	44.868	Octodon_degus
ENSXMAG00000005940	ptcd2	80	75.522	ENSONIG00000011269	ptcd2	98	75.522	Oreochromis_niloticus
ENSXMAG00000005940	ptcd2	82	45.272	ENSOCUG00000007970	PTCD2	85	44.923	Oryctolagus_cuniculus
ENSXMAG00000005940	ptcd2	92	67.866	ENSORLG00000003851	ptcd2	99	67.866	Oryzias_latipes
ENSXMAG00000005940	ptcd2	91	67.624	ENSORLG00020009823	ptcd2	100	67.624	Oryzias_latipes_hni
ENSXMAG00000005940	ptcd2	82	65.797	ENSORLG00015016777	ptcd2	99	65.797	Oryzias_latipes_hsok
ENSXMAG00000005940	ptcd2	95	66.165	ENSOMEG00000012396	ptcd2	97	66.165	Oryzias_melastigma
ENSXMAG00000005940	ptcd2	82	45.115	ENSOGAG00000008390	PTCD2	90	45.115	Otolemur_garnettii
ENSXMAG00000005940	ptcd2	84	44.321	ENSOARG00000005087	PTCD2	87	44.706	Ovis_aries
ENSXMAG00000005940	ptcd2	82	43.966	ENSPPAG00000028480	PTCD2	90	43.966	Pan_paniscus
ENSXMAG00000005940	ptcd2	82	43.678	ENSPTRG00000016968	PTCD2	90	43.678	Pan_troglodytes
ENSXMAG00000005940	ptcd2	82	45.217	ENSPANG00000006611	PTCD2	89	45.217	Papio_anubis
ENSXMAG00000005940	ptcd2	86	53.973	ENSPKIG00000019896	ptcd2	89	55.000	Paramormyrops_kingsleyae
ENSXMAG00000005940	ptcd2	72	50.000	ENSPSIG00000014559	PTCD2	94	50.000	Pelodiscus_sinensis
ENSXMAG00000005940	ptcd2	82	46.000	ENSPEMG00000000884	Ptcd2	85	46.483	Peromyscus_maniculatus_bairdii
ENSXMAG00000005940	ptcd2	84	46.761	ENSPCIG00000029047	PTCD2	86	47.416	Phascolarctos_cinereus
ENSXMAG00000005940	ptcd2	91	93.211	ENSPLAG00000010456	ptcd2	100	93.211	Poecilia_latipinna
ENSXMAG00000005940	ptcd2	93	91.582	ENSPREG00000021797	ptcd2	100	91.327	Poecilia_reticulata
ENSXMAG00000005940	ptcd2	82	38.793	ENSPPYG00000015543	PTCD2	88	38.793	Pongo_abelii
ENSXMAG00000005940	ptcd2	68	41.176	ENSPCAG00000006806	PTCD2	92	41.176	Procavia_capensis
ENSXMAG00000005940	ptcd2	82	44.253	ENSPVAG00000010935	PTCD2	84	44.648	Pteropus_vampyrus
ENSXMAG00000005940	ptcd2	92	75.064	ENSPNYG00000003122	ptcd2	99	75.064	Pundamilia_nyererei
ENSXMAG00000005940	ptcd2	91	59.690	ENSPNAG00000021490	ptcd2	93	60.556	Pygocentrus_nattereri
ENSXMAG00000005940	ptcd2	82	47.126	ENSRNOG00000028403	Ptcd2	91	47.126	Rattus_norvegicus
ENSXMAG00000005940	ptcd2	82	41.379	ENSRBIG00000032929	PTCD2	89	41.379	Rhinopithecus_bieti
ENSXMAG00000005940	ptcd2	82	44.828	ENSRROG00000000080	PTCD2	91	44.828	Rhinopithecus_roxellana
ENSXMAG00000005940	ptcd2	82	43.228	ENSSBOG00000018911	PTCD2	91	43.228	Saimiri_boliviensis_boliviensis
ENSXMAG00000005940	ptcd2	86	44.077	ENSSHAG00000003833	PTCD2	88	44.868	Sarcophilus_harrisii
ENSXMAG00000005940	ptcd2	91	53.906	ENSSFOG00015015415	ptcd2	100	53.906	Scleropages_formosus
ENSXMAG00000005940	ptcd2	89	62.730	ENSSMAG00000010350	ptcd2	98	62.533	Scophthalmus_maximus
ENSXMAG00000005940	ptcd2	95	69.250	ENSSDUG00000008142	ptcd2	99	69.095	Seriola_dumerili
ENSXMAG00000005940	ptcd2	89	71.353	ENSSLDG00000015284	ptcd2	98	71.200	Seriola_lalandi_dorsalis
ENSXMAG00000005940	ptcd2	65	40.876	ENSSARG00000004983	PTCD2	87	40.876	Sorex_araneus
ENSXMAG00000005940	ptcd2	84	44.507	ENSSPUG00000000176	PTCD2	84	46.201	Sphenodon_punctatus
ENSXMAG00000005940	ptcd2	92	64.706	ENSSPAG00000008591	ptcd2	99	64.524	Stegastes_partitus
ENSXMAG00000005940	ptcd2	82	44.540	ENSSSCG00000016975	PTCD2	75	46.226	Sus_scrofa
ENSXMAG00000005940	ptcd2	76	46.729	ENSTGUG00000005705	PTCD2	93	46.729	Taeniopygia_guttata
ENSXMAG00000005940	ptcd2	83	43.305	ENSTBEG00000016559	PTCD2	90	43.305	Tupaia_belangeri
ENSXMAG00000005940	ptcd2	82	45.821	ENSTTRG00000011851	PTCD2	84	46.319	Tursiops_truncatus
ENSXMAG00000005940	ptcd2	82	44.413	ENSUAMG00000007583	PTCD2	76	44.954	Ursus_americanus
ENSXMAG00000005940	ptcd2	82	44.413	ENSUMAG00000007666	PTCD2	85	44.954	Ursus_maritimus
ENSXMAG00000005940	ptcd2	82	43.391	ENSVPAG00000009597	PTCD2	84	43.731	Vicugna_pacos
ENSXMAG00000005940	ptcd2	82	45.402	ENSVVUG00000007299	-	87	46.084	Vulpes_vulpes
ENSXMAG00000005940	ptcd2	91	44.584	ENSXETG00000031652	PTCD2	92	44.262	Xenopus_tropicalis