EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000006065 (Gene tree)
Gene ID: 102232922
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 6237 bases
Position: chr18:3075540-3081776
Accession: 102232922
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000020758	SBDS	PF01172.18	6.6e-34	1	1
ENSXMAP00000006085	SBDS	PF01172.18	7.9e-34	1	1
ENSXMAP00000006085	SBDS_C	PF09377.10	4.2e-40	1	1
ENSXMAP00000020758	SBDS_C	PF09377.10	3.3e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000006091	-	4913	XM_005813014	ENSXMAP00000006085	249 (aa)	XP_005813071	M3ZV42
ENSXMAT00000031789	-	678	-	ENSXMAP00000020758	225 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000006065's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000006065's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000006065	sbds	100	81.124	ENSG00000126524	SBDS	97	87.952	Homo_sapiens
ENSXMAG00000006065	sbds	100	94.378	ENSAPOG00000014285	sbds	100	94.378	Acanthochromis_polyacanthus
ENSXMAG00000006065	sbds	100	81.124	ENSAMEG00000018167	SBDS	99	81.124	Ailuropoda_melanoleuca
ENSXMAG00000006065	sbds	100	93.651	ENSACIG00000007308	sbds	100	93.651	Amphilophus_citrinellus
ENSXMAG00000006065	sbds	100	93.976	ENSAOCG00000016770	sbds	100	93.976	Amphiprion_ocellaris
ENSXMAG00000006065	sbds	100	94.378	ENSAPEG00000015897	sbds	100	94.378	Amphiprion_percula
ENSXMAG00000006065	sbds	100	93.173	ENSATEG00000006901	sbds	100	93.173	Anabas_testudineus
ENSXMAG00000006065	sbds	83	79.612	ENSANAG00000037501	-	99	79.612	Aotus_nancymaae
ENSXMAG00000006065	sbds	96	73.272	ENSANAG00000024342	-	95	78.313	Aotus_nancymaae
ENSXMAG00000006065	sbds	100	94.378	ENSACLG00000018750	sbds	100	94.378	Astatotilapia_calliptera
ENSXMAG00000006065	sbds	100	86.747	ENSAMXG00000005361	sbds	99	86.747	Astyanax_mexicanus
ENSXMAG00000006065	sbds	100	81.526	ENSBTAG00000004051	SBDS	99	81.526	Bos_taurus
ENSXMAG00000006065	sbds	98	58.537	WBGene00021063	sbds-1	97	58.130	Caenorhabditis_elegans
ENSXMAG00000006065	sbds	100	81.124	ENSCJAG00000041007	SBDS	99	81.124	Callithrix_jacchus
ENSXMAG00000006065	sbds	100	79.283	ENSCAFG00000010797	SBDS	99	79.283	Canis_familiaris
ENSXMAG00000006065	sbds	100	81.124	ENSCAFG00020005357	SBDS	99	81.124	Canis_lupus_dingo
ENSXMAG00000006065	sbds	100	81.526	ENSCHIG00000026854	SBDS	99	81.526	Capra_hircus
ENSXMAG00000006065	sbds	100	81.124	ENSTSYG00000033822	SBDS	99	81.124	Carlito_syrichta
ENSXMAG00000006065	sbds	65	79.141	ENSCAPG00000006634	SBDS	99	79.141	Cavia_aperea
ENSXMAG00000006065	sbds	100	82.329	ENSCPOG00000036143	SBDS	99	82.329	Cavia_porcellus
ENSXMAG00000006065	sbds	100	81.124	ENSCCAG00000020671	SBDS	93	87.952	Cebus_capucinus
ENSXMAG00000006065	sbds	100	81.124	ENSCATG00000039026	SBDS	99	81.124	Cercocebus_atys
ENSXMAG00000006065	sbds	99	58.065	ENSCLAG00000002113	-	99	58.065	Chinchilla_lanigera
ENSXMAG00000006065	sbds	100	82.731	ENSCLAG00000005721	-	99	82.731	Chinchilla_lanigera
ENSXMAG00000006065	sbds	100	81.124	ENSCSAG00000018275	SBDS	99	81.124	Chlorocebus_sabaeus
ENSXMAG00000006065	sbds	100	76.305	ENSCHOG00000003795	SBDS	99	76.305	Choloepus_hoffmanni
ENSXMAG00000006065	sbds	100	84.739	ENSCPBG00000014893	SBDS	99	84.739	Chrysemys_picta_bellii
ENSXMAG00000006065	sbds	99	68.145	ENSCSAVG00000011811	-	99	68.145	Ciona_savignyi
ENSXMAG00000006065	sbds	100	80.723	ENSCANG00000032368	SBDS	99	80.723	Colobus_angolensis_palliatus
ENSXMAG00000006065	sbds	65	79.141	ENSCGRG00001019886	Sbds	99	79.141	Cricetulus_griseus_chok1gshd
ENSXMAG00000006065	sbds	83	81.068	ENSCGRG00000009211	Sbds	99	81.068	Cricetulus_griseus_crigri
ENSXMAG00000006065	sbds	100	91.165	ENSCSEG00000005798	sbds	100	91.165	Cynoglossus_semilaevis
ENSXMAG00000006065	sbds	100	94.779	ENSCVAG00000001053	sbds	100	94.779	Cyprinodon_variegatus
ENSXMAG00000006065	sbds	100	85.944	ENSDARG00000027803	sbds	99	85.944	Danio_rerio
ENSXMAG00000006065	sbds	100	81.526	ENSDNOG00000041174	SBDS	99	81.526	Dasypus_novemcinctus
ENSXMAG00000006065	sbds	100	83.534	ENSDORG00000026218	Sbds	99	83.534	Dipodomys_ordii
ENSXMAG00000006065	sbds	91	62.719	FBgn0035714	CG8549	98	61.538	Drosophila_melanogaster
ENSXMAG00000006065	sbds	93	60.345	ENSEBUG00000015780	sbds	99	60.345	Eptatretus_burgeri
ENSXMAG00000006065	sbds	100	81.124	ENSEASG00005008821	SBDS	99	81.124	Equus_asinus_asinus
ENSXMAG00000006065	sbds	100	81.124	ENSECAG00000008202	SBDS	99	81.124	Equus_caballus
ENSXMAG00000006065	sbds	89	63.184	ENSEEUG00000004768	SBDS	97	63.184	Erinaceus_europaeus
ENSXMAG00000006065	sbds	100	87.550	ENSELUG00000008382	sbds	99	87.550	Esox_lucius
ENSXMAG00000006065	sbds	100	81.124	ENSFCAG00000022142	SBDS	99	81.124	Felis_catus
ENSXMAG00000006065	sbds	100	86.747	ENSFALG00000013808	SBDS	99	86.747	Ficedula_albicollis
ENSXMAG00000006065	sbds	100	82.329	ENSFDAG00000018947	-	99	82.329	Fukomys_damarensis
ENSXMAG00000006065	sbds	100	92.369	ENSFHEG00000000708	sbds	100	92.369	Fundulus_heteroclitus
ENSXMAG00000006065	sbds	100	87.550	ENSGMOG00000018356	sbds	99	87.550	Gadus_morhua
ENSXMAG00000006065	sbds	100	83.534	ENSGALG00000027989	SBDS	99	83.534	Gallus_gallus
ENSXMAG00000006065	sbds	92	96.522	ENSGAFG00000014204	sbds	100	96.522	Gambusia_affinis
ENSXMAG00000006065	sbds	100	87.952	ENSGACG00000012697	sbds	100	87.952	Gasterosteus_aculeatus
ENSXMAG00000006065	sbds	86	84.977	ENSGAGG00000022402	SBDS	99	84.977	Gopherus_agassizii
ENSXMAG00000006065	sbds	96	62.917	ENSGGOG00000040023	-	92	62.917	Gorilla_gorilla
ENSXMAG00000006065	sbds	100	94.378	ENSHBUG00000002660	sbds	100	94.378	Haplochromis_burtoni
ENSXMAG00000006065	sbds	100	80.723	ENSHGLG00000009671	SBDS	99	80.723	Heterocephalus_glaber_female
ENSXMAG00000006065	sbds	100	80.723	ENSHGLG00100011332	SBDS	99	80.723	Heterocephalus_glaber_male
ENSXMAG00000006065	sbds	100	87.952	ENSHCOG00000018606	sbds	100	87.952	Hippocampus_comes
ENSXMAG00000006065	sbds	100	86.345	ENSIPUG00000006536	sbds	99	86.345	Ictalurus_punctatus
ENSXMAG00000006065	sbds	100	58.333	ENSJJAG00000003934	-	99	58.800	Jaculus_jaculus
ENSXMAG00000006065	sbds	99	79.757	ENSJJAG00000012033	-	99	79.757	Jaculus_jaculus
ENSXMAG00000006065	sbds	100	95.181	ENSKMAG00000018542	sbds	100	95.181	Kryptolebias_marmoratus
ENSXMAG00000006065	sbds	100	90.361	ENSLBEG00000016687	sbds	100	90.361	Labrus_bergylta
ENSXMAG00000006065	sbds	100	71.937	ENSLACG00000018916	SBDS	99	71.937	Latimeria_chalumnae
ENSXMAG00000006065	sbds	100	86.747	ENSLOCG00000004073	sbds	99	86.747	Lepisosteus_oculatus
ENSXMAG00000006065	sbds	100	81.526	ENSLAFG00000008763	SBDS	99	81.526	Loxodonta_africana
ENSXMAG00000006065	sbds	100	81.124	ENSMFAG00000032620	SBDS	99	81.124	Macaca_fascicularis
ENSXMAG00000006065	sbds	100	81.124	ENSMMUG00000045653	SBDS	99	81.124	Macaca_mulatta
ENSXMAG00000006065	sbds	100	81.124	ENSMNEG00000031523	SBDS	99	81.124	Macaca_nemestrina
ENSXMAG00000006065	sbds	100	66.812	ENSMLEG00000036826	SBDS	99	66.812	Mandrillus_leucophaeus
ENSXMAG00000006065	sbds	100	93.574	ENSMAMG00000016062	sbds	100	93.574	Mastacembelus_armatus
ENSXMAG00000006065	sbds	100	94.378	ENSMZEG00005024385	sbds	100	94.378	Maylandia_zebra
ENSXMAG00000006065	sbds	100	83.534	ENSMGAG00000002119	SBDS	99	83.534	Meleagris_gallopavo
ENSXMAG00000006065	sbds	100	67.470	ENSMAUG00000022214	-	100	67.470	Mesocricetus_auratus
ENSXMAG00000006065	sbds	100	81.526	ENSMICG00000014366	SBDS	99	81.526	Microcebus_murinus
ENSXMAG00000006065	sbds	100	81.928	ENSMOCG00000011739	Sbds	99	81.928	Microtus_ochrogaster
ENSXMAG00000006065	sbds	100	82.000	ENSMMOG00000005061	sbds	100	82.400	Mola_mola
ENSXMAG00000006065	sbds	100	82.731	ENSMODG00000006644	SBDS	99	82.731	Monodelphis_domestica
ENSXMAG00000006065	sbds	100	89.558	ENSMALG00000010219	sbds	100	89.558	Monopterus_albus
ENSXMAG00000006065	sbds	100	82.731	MGP_CAROLIEiJ_G0027800	Sbds	98	92.857	Mus_caroli
ENSXMAG00000006065	sbds	100	83.133	ENSMUSG00000025337	Sbds	98	92.857	Mus_musculus
ENSXMAG00000006065	sbds	100	82.731	MGP_PahariEiJ_G0024384	Sbds	98	92.857	Mus_pahari
ENSXMAG00000006065	sbds	100	83.133	MGP_SPRETEiJ_G0028798	Sbds	98	92.857	Mus_spretus
ENSXMAG00000006065	sbds	67	81.437	ENSMPUG00000016192	SBDS	96	81.437	Mustela_putorius_furo
ENSXMAG00000006065	sbds	73	75.691	ENSMLUG00000013575	SBDS	99	75.691	Myotis_lucifugus
ENSXMAG00000006065	sbds	100	82.731	ENSNGAG00000012093	Sbds	99	82.731	Nannospalax_galili
ENSXMAG00000006065	sbds	100	94.378	ENSNBRG00000017027	sbds	100	94.378	Neolamprologus_brichardi
ENSXMAG00000006065	sbds	100	81.124	ENSNLEG00000013288	SBDS	99	81.124	Nomascus_leucogenys
ENSXMAG00000006065	sbds	100	82.329	ENSOPRG00000008721	SBDS	99	82.329	Ochotona_princeps
ENSXMAG00000006065	sbds	100	63.855	ENSODEG00000001116	-	99	63.855	Octodon_degus
ENSXMAG00000006065	sbds	100	62.249	ENSODEG00000000137	-	84	64.659	Octodon_degus
ENSXMAG00000006065	sbds	100	73.896	ENSODEG00000019253	-	84	73.896	Octodon_degus
ENSXMAG00000006065	sbds	100	94.378	ENSONIG00000005874	sbds	100	94.378	Oreochromis_niloticus
ENSXMAG00000006065	sbds	83	79.126	ENSOANG00000007674	-	99	79.902	Ornithorhynchus_anatinus
ENSXMAG00000006065	sbds	100	83.133	ENSOCUG00000003170	SBDS	99	83.133	Oryctolagus_cuniculus
ENSXMAG00000006065	sbds	100	91.566	ENSORLG00000023489	sbds	100	91.566	Oryzias_latipes
ENSXMAG00000006065	sbds	100	91.165	ENSORLG00020019282	sbds	100	91.165	Oryzias_latipes_hni
ENSXMAG00000006065	sbds	100	91.165	ENSORLG00015008005	sbds	100	91.165	Oryzias_latipes_hsok
ENSXMAG00000006065	sbds	100	91.968	ENSOMEG00000022747	sbds	100	91.968	Oryzias_melastigma
ENSXMAG00000006065	sbds	100	69.880	ENSOGAG00000015036	-	99	69.880	Otolemur_garnettii
ENSXMAG00000006065	sbds	100	81.928	ENSOGAG00000009011	-	99	81.928	Otolemur_garnettii
ENSXMAG00000006065	sbds	100	81.526	ENSOARG00000010609	SBDS	99	81.526	Ovis_aries
ENSXMAG00000006065	sbds	100	80.321	ENSPPAG00000043889	-	99	80.321	Pan_paniscus
ENSXMAG00000006065	sbds	100	81.124	ENSPPRG00000002307	SBDS	99	81.124	Panthera_pardus
ENSXMAG00000006065	sbds	100	81.124	ENSPTIG00000021308	SBDS	99	81.124	Panthera_tigris_altaica
ENSXMAG00000006065	sbds	96	78.704	ENSPTRG00000048174	-	94	78.704	Pan_troglodytes
ENSXMAG00000006065	sbds	100	67.470	ENSPTRG00000047744	-	99	67.470	Pan_troglodytes
ENSXMAG00000006065	sbds	100	67.470	ENSPTRG00000050835	-	99	67.470	Pan_troglodytes
ENSXMAG00000006065	sbds	100	81.124	ENSPTRG00000019254	SBDS	99	81.124	Pan_troglodytes
ENSXMAG00000006065	sbds	100	81.124	ENSPANG00000004078	SBDS	99	81.124	Papio_anubis
ENSXMAG00000006065	sbds	100	89.157	ENSPKIG00000006489	sbds	99	89.157	Paramormyrops_kingsleyae
ENSXMAG00000006065	sbds	83	82.126	ENSPSIG00000014603	SBDS	99	82.126	Pelodiscus_sinensis
ENSXMAG00000006065	sbds	100	93.976	ENSPMGG00000004246	sbds	100	93.976	Periophthalmus_magnuspinnatus
ENSXMAG00000006065	sbds	100	82.731	ENSPEMG00000008728	Sbds	99	82.731	Peromyscus_maniculatus_bairdii
ENSXMAG00000006065	sbds	100	83.133	ENSPCIG00000029718	SBDS	99	83.133	Phascolarctos_cinereus
ENSXMAG00000006065	sbds	100	97.992	ENSPFOG00000015837	sbds	100	97.992	Poecilia_formosa
ENSXMAG00000006065	sbds	100	98.394	ENSPLAG00000003641	sbds	100	98.394	Poecilia_latipinna
ENSXMAG00000006065	sbds	100	97.992	ENSPMEG00000019483	sbds	100	97.992	Poecilia_mexicana
ENSXMAG00000006065	sbds	100	97.992	ENSPREG00000018758	sbds	100	97.992	Poecilia_reticulata
ENSXMAG00000006065	sbds	100	81.124	ENSPPYG00000017513	SBDS	99	81.124	Pongo_abelii
ENSXMAG00000006065	sbds	100	81.124	ENSPCOG00000021098	SBDS	99	81.124	Propithecus_coquereli
ENSXMAG00000006065	sbds	100	81.526	ENSPVAG00000009369	SBDS	99	81.526	Pteropus_vampyrus
ENSXMAG00000006065	sbds	100	93.976	ENSPNYG00000022403	sbds	100	93.976	Pundamilia_nyererei
ENSXMAG00000006065	sbds	100	89.157	ENSPNAG00000001120	sbds	99	89.157	Pygocentrus_nattereri
ENSXMAG00000006065	sbds	100	82.731	ENSRNOG00000000888	Sbds	99	82.731	Rattus_norvegicus
ENSXMAG00000006065	sbds	100	81.124	ENSRBIG00000035557	SBDS	99	81.124	Rhinopithecus_bieti
ENSXMAG00000006065	sbds	100	81.124	ENSRROG00000040842	-	99	81.124	Rhinopithecus_roxellana
ENSXMAG00000006065	sbds	100	67.068	ENSRROG00000041986	-	99	67.068	Rhinopithecus_roxellana
ENSXMAG00000006065	sbds	96	42.683	YLR022C	-	96	42.683	Saccharomyces_cerevisiae
ENSXMAG00000006065	sbds	93	79.221	ENSSBOG00000022460	SBDS	99	79.221	Saimiri_boliviensis_boliviensis
ENSXMAG00000006065	sbds	100	71.486	ENSSHAG00000010263	SBDS	99	71.486	Sarcophilus_harrisii
ENSXMAG00000006065	sbds	100	89.558	ENSSFOG00015001108	sbds	99	89.558	Scleropages_formosus
ENSXMAG00000006065	sbds	100	91.566	ENSSMAG00000020506	sbds	100	91.566	Scophthalmus_maximus
ENSXMAG00000006065	sbds	100	92.771	ENSSDUG00000001528	sbds	100	92.771	Seriola_dumerili
ENSXMAG00000006065	sbds	100	92.771	ENSSLDG00000003659	sbds	100	92.771	Seriola_lalandi_dorsalis
ENSXMAG00000006065	sbds	68	87.582	ENSSARG00000013132	-	100	87.582	Sorex_araneus
ENSXMAG00000006065	sbds	73	89.535	ENSSARG00000001899	-	73	89.535	Sorex_araneus
ENSXMAG00000006065	sbds	100	81.928	ENSSPUG00000002699	SBDS	99	81.928	Sphenodon_punctatus
ENSXMAG00000006065	sbds	100	94.378	ENSSPAG00000016419	sbds	100	86.400	Stegastes_partitus
ENSXMAG00000006065	sbds	100	81.526	ENSSSCG00000007732	SBDS	99	81.526	Sus_scrofa
ENSXMAG00000006065	sbds	66	85.366	ENSTGUG00000003426	SBDS	99	85.366	Taeniopygia_guttata
ENSXMAG00000006065	sbds	100	92.771	ENSTRUG00000021443	sbds	100	92.771	Takifugu_rubripes
ENSXMAG00000006065	sbds	100	91.968	ENSTNIG00000019000	sbds	100	91.968	Tetraodon_nigroviridis
ENSXMAG00000006065	sbds	90	70.443	ENSTBEG00000001178	SBDS	97	70.443	Tupaia_belangeri
ENSXMAG00000006065	sbds	100	63.454	ENSTTRG00000003921	SBDS	99	63.454	Tursiops_truncatus
ENSXMAG00000006065	sbds	100	81.124	ENSUAMG00000001326	SBDS	99	81.124	Ursus_americanus
ENSXMAG00000006065	sbds	100	81.124	ENSUMAG00000015353	SBDS	99	81.124	Ursus_maritimus
ENSXMAG00000006065	sbds	100	81.124	ENSVVUG00000016478	SBDS	99	81.124	Vulpes_vulpes
ENSXMAG00000006065	sbds	100	84.337	ENSXETG00000010093	sbds	99	84.337	Xenopus_tropicalis
ENSXMAG00000006065	sbds	100	99.111	ENSXCOG00000010639	sbds	100	99.111	Xiphophorus_couchianus